Subexponential algorithms for partial cover problems

Partial Cover problems are optimization versions of fundamental and well-studied problems like Vertex Cover and Dominating Set. Here one is interested in covering (or dominating) the maximum number of edges (or vertices) using a given number k of vertices, rather than covering all edges (or vertices). In general graphs, these problems are hard for parameterized complexity classes when parameterized by k. It was recently shown by Amini et al. (2008) [1] that Partial Vertex Cover and Partial Dominating Set are fixed parameter tractable on large classes of sparse graphs, namely H-minor-free graphs, which include planar graphs and graphs of bounded genus. In particular, it was shown that on planar graphs both problems can be solved in time ²O(k)nO(1).During the last decade there has been an extensive study on parameterized subexponential algorithms. In particular, it was shown that the classical Vertex Cover and Dominating Set problems can be solved in subexponential time on H-minor-free graphs. The techniques developed to obtain subexponential algorithms for classical problems do not apply to partial cover problems. It was left as an open problem by Amini et al. (2008) [1] whether there is a subexponential algorithm for Partial Vertex Cover and Partial Dominating Set. In this paper, we answer the question affirmatively by solving both problems in time not only on planar graphs but also on much larger classes of graphs, namely, apex-minor-free graphs. Compared to previously known algorithms for these problems our algorithms are significantly faster and simpler.     

Serial and Parallel Algorithms for (k,2)-Partite Graphs

We introduce a class of layered graphs which we call (k,2)-partite and which we argue are an interesting class because of several important applications. We show that testing for (k,2)-partiteness can be done efficiently both on sequential and parallel machines, by showing that membership is in NSPACE(log n) and in NC². We show that (k,2)-partite graphs have bounded path width. We then show that a particular NP-complete problem, namely Maximum Independent Set, is solvable in linear time on bounded pathwidth graphs if the path decomposition is included in the input. Finally, we show that the Maximum Independent Set problem is in NC² for (k,2)-partite graphs. We note that linear time solutions for certain NP-complete problems have been shown for a wider class of graphs, namely partial k-trees. Our linear time algorithm is somewhat simpler in structure. We conjecture that our techniques can be used on many NP-complete problems to yield efficient algorithms for (k,2)-partite graphs.     

Two fixed-parameter algorithms for Vertex Covering by Paths on Trees

Vertex Covering by Paths on Trees with applications in machine translation is the task to cover all vertices of a tree T=(V,E) by choosing a minimum-weight subset of given paths in the tree. The problem is NP-hard and has recently been solved by an exact algorithm running in O(C⁴⋅²|V|) time, where C denotes the maximum number of paths covering a tree vertex. We improve this running time to O(C²⋅C⋅|V|). On the route to this, we introduce the problem Tree-like Weighted Hitting Set which might be of independent interest. In addition, for the unweighted case of Vertex Covering by Paths on Trees, we present an exact algorithm using a search tree of size O(k²⋅k!), where k denotes the number of chosen covering paths. Finally, we briefly discuss the existence of a size-O(k²) problem kernel.     

反馈集问题的研究进展

反馈集问题是经典的NP难问题,在电路测试、操作系统解死锁、分析工艺流程、生物计算等领域都有重要应用,按照反馈集中元素类型可分为反馈顶点集(FVS)问题和反馈边集(FAS)问题。人们利用线性规划和局部搜索等技术设计了一系列关于FVS和FAS问题的近似算法,并基于分枝一剪枝策略和加权分治技术提出了FVS问题的精确算法。随着参数计算理论的发展,近年来参数化反馈集问题引起了人们的重视,并取得了很大突破。目前已经证明了无向图和有向图中FVS问题和FAS问题都是固定参数可解的(FPT)。利用树分解、分支搜索、迭代压缩等技术,对无向图FVS问题提出了一系列FPT算法。针对某些特殊的应用,人们开展了对具有特殊性质的图上FVS问题的研究,提出了一些多项式时间可解的精确算法。现首先介绍了在无向图中关于FVS问题的近似算法与精确算法,然后具体分析了FVS问题的参数化算法。进一步阐述了关于有向图和特殊图上FVS问题的研究现状,介绍了FAS问题的研究成果。基于对反馈集问题研究现状的分析,提出了今后FVS问题研究中值得关注的几个方面。     

Efficient Exact Algorithms through Enumerating Maximal Independent Sets and Other Techniques

We give substantially improved exact exponential-time algorithms for a number of NP-hard problems. These algorithms are obtained using a variety of techniques. These techniques include: obtaining exact algorithms by enumerating maximal independent sets in a graph, obtaining exact algorithms from parameterized algorithms and a variant of the usual branch-and-bound technique which we call the "colored" branch-and-bound technique. These techniques are simple in that they avoid detailed case analyses and yield algorithms that can be easily implemented. We show the power of these techniques by applying them to several NP-hard problems and obtaining new improved upper bounds on the running time. The specific problems that we tackle are: (1) the Odd Cycle Transversal problem in general undirected graphs, (2) the Feedback Vertex Set problem in directed graphs of maximum degree 4, (3) Feedback Arc Set problem in tournaments, (4) the 4-Hitting Set problem and (5) the Minimum Maximal Matching and the Edge Dominating Set problems. The algorithms that we present for these problems are the best known and are a substantial improvement over previous best results. For example, for the Minimum Maximal Matching we give an O^*(1.4425ⁿ) algorithm improving the previous best result of O^*(1.4422^m) [35]. For the Odd Cycle Transversal problem, we give an O^*(1.62ⁿ) algorithm which improves the previous time bound of O^*(1.7724ⁿ) [3].     

One for the Price of Two: a Unified Approach for Approximating Covering Problems

We present a simple and unified approach for developing and analyzing approximation algorithms for covering problems. We illustrate this on approximation algorithms for the following problems: Vertex Cover, Set Cover, Feedback Vertex Set, Generalized Steiner Forest, and related problems. The main idea can be phrased as follows: iteratively, pay two dollars (at most) to reduce the total optimum by one dollar (at least), so the rate of payment is no more than twice the rate of the optimum reduction. This implies a total payment (i.e., approximation cost) ≤ twice the optimum cost. Our main contribution is based on a formal definition for covering problems, which includes all the above fundamental problems and others. We further extend the Bafna et al. extension of the Local-Ratio theorem. Our extension eventually yields a short generic r -approximation algorithm which can generate most known approximation algorithms for most covering problems. Another extension of the Local-Ratio theorem to randomized algorithms gives a simple proof of Pitt's randomized approximation for Vertex Cover. Using this approach, we develop a modified greedy algorithm, which for Vertex Cover gives an expected performance ratio ≤ 2 . Received September 17, 1997; revised March 5, 1998.     

A deterministic (2−2/(k+1))n algorithm for k-SAT based on local search

Local search is widely used for solving the propositional satisfiability problem. Papadimitriou (1991) showed that randomized local search solves 2-SAT in polynomial time. Recently, Schöning (1999) proved that a close algorithm for k-SAT takes time (2−2/k)ⁿ up to a polynomial factor. This is the best known worst-case upper bound for randomized 3-SAT algorithms (cf. also recent preprint by Schuler et al.).We describe a deterministic local search algorithm for k-SAT running in time (2−2/(k+1))ⁿ up to a polynomial factor. The key point of our algorithm is the use of covering codes instead of random choice of initial assignments. Compared to other “weakly exponential” algorithms, our algorithm is technically quite simple. We also describe an improved version of local search. For 3-SAT the improved algorithm runs in time 1.481ⁿ up to a polynomial factor. Our bounds are better than all previous bounds for deterministic k-SAT algorithms.     

An O(2<Superscript>O(k)</Superscript>n<Superscript>3</Superscript>) FPT Algorithm for the Undirected Feedback Vertex Set Problem

We describe an algorithm for the Feedback Vertex Set problem on undirected graphs, parameterized by the size k of the feedback vertex set, that runs in time O(c^kn³) where c = 10.567 and n is the number of vertices in the graph. The best previous algorithms were based on the method of bounded search trees, branching on short cycles. The best previous running time of an FPT algorithm for this problem, due to Raman, Saurabh and Subramanian, has a parameter function of the form 2^{O(k log k /log log k)}. Whether an exponentially linear in k FPT algorithm for this problem is possible has been previously noted as a significant challenge. Our algorithm is based on the new FPT technique of iterative compression. Our result holds for a more general form of the problem, where a subset of the vertices may be marked as forbidden to belong to the feedback set. We also establish "exponential optimality" for our algorithm by proving that no FPT algorithm with a parameter function of the form O(2^o(k)) is possible, unless there is an unlikely collapse of parameterized complexity classes, namely FPT = M[1].     

Parameterized algorithm for eternal vertex cover

In this paper we initiate the study of a “dynamic” variant of the classical Vertex Cover problem, the Eternal Vertex Cover problem introduced by Klostermeyer and Mynhardt, from the perspective of parameterized algorithms. This problem consists in placing a minimum number of guards on the vertices of a graph such that these guards can protect the graph from any sequence of attacks on its edges. In response to an attack, each guard is allowed either to stay in his vertex, or to move to a neighboring vertex. However, at least one guard has to fix the attacked edge by moving along it. The other guards may move to reconfigure and prepare for the next attack. Thus at every step the vertices occupied by guards form a vertex cover. We show that the problem admits a kernel of size k⁴(k+1)+2k, which shows that the problem is fixed parameter tractable when parameterized by the number of available guards k. Finally, we also provide an algorithm with running time O(²O(k²)+nm) for Eternal Vertex Cover, where n is the number of vertices and m the number of edges of the input graph. In passing we also observe that Eternal Vertex Cover is NP-hard, yet it has a polynomial time 2-approximation algorithm.     

Automated Generation of Search Tree Algorithms for Hard Graph Modification Problems

We present a framework for an automated generation of exact search tree algorithms for NP-hard problems. The purpose of our approach is twofold—rapid development and improved upper bounds. Many search tree algorithms for various problems in the literature are based on complicated case distinctions. Our approach may lead to a much simpler process of developing and analyzing these algorithms. Moreover, using the sheer computing power of machines it may also lead to improved upper bounds on search tree sizes (i.e., faster exact solving algorithms) in comparison with previously developed hand-made search trees. Among others, such an example is given with the NP-complete Cluster Editing problem (also known as Correlation Clustering on complete unweighted graphs), which asks for the minimum number of edge additions and deletions to create a graph which is a disjoint union of cliques. The hand-made search tree for Cluster Editing had worst-case size O(2.27^k), which now is improved to O(1.92^k) due to our new method. (Herein, k denotes the number of edge modifications allowed.)     

A refined search tree technique for Dominating Set on planar graphs

We establish a refined search tree technique for the parameterized DOMINATING SET problem on planar graphs. Here, we are given an undirected graph and we ask for a set of at most k vertices such that every other vertex has at least one neighbor in this set. We describe algorithms with running times O(8^kn) and O(8^kk+n³), where n is the number of vertices in the graph, based on bounded search trees. We describe a set of polynomial time data-reduction rules for a more general “annotated” problem on black/white graphs that asks for a set of k vertices (black or white) that dominate all the black vertices. An intricate argument based on the Euler formula then establishes an efficient branching strategy for reduced inputs to this problem. In addition, we give a family examples showing that the bound of the branching theorem is optimal with respect to our reduction rules. Our final search tree algorithm is easy to implement; its analysis, however, is involved.     

Parallel Approximation Schemes for problems on planar graphs

 This paper describes a technique to obtain NC Approximations Schemes for the Maximum Independent Set in planar graphs and related optimization problems. The strategy consists in decomposing the graph into k-outerplanar subgraphs and solve for each k-outerplanar using tree contraction techniques. Received November 2, 1993/February 14, 1995     

Boolean-width of graphs

We introduce the graph parameter boolean-width, related to the number of different unions of neighborhoods-Boolean sums of neighborhoods-across a cut of a graph. For many graph problems, this number is the runtime bottleneck when using a divide-and-conquer approach. For an n-vertex graph given with a decomposition tree of boolean-width k, we solve Maximum Weight Independent Set in time O(n²k2^2k) and Minimum Weight Dominating Set in time O(n²+nk2^3k). With an additional n² factor in the runtime, we can also count all independent sets and dominating sets of each cardinality.Boolean-width is bounded on the same classes of graphs as clique-width. boolean-width is similar to rank-width, which is related to the number of GF(2)-sums of neighborhoods instead of the Boolean sums used for boolean-width. We show for any graph that its boolean-width is at most its clique-width and at most quadratic in its rank-width. We exhibit a class of graphs, the Hsu-grids, having the property that a Hsu-grid on Θ(n²) vertices has boolean-width Θ(logn) and rank-width, clique-width, tree-width, and branch-width Θ(n).     

The Compatibility of Binary Characters on Phylogenetic Networks: Complexity and Parameterized Algorithms

In a recent article, Nakhleh, Ringe and Warnow introduced perfect phylogenetic networks—a model of language evolution where languages do not evolve via clean speciation—and formulated a set of problems for their accurate reconstruction. Their new methodology assumes networks, rather than trees, as the correct model to capture the evolutionary history of natural languages. They proved the NP-hardness of the problem of testing whether a network is a perfect phylogenetic one for characters exhibiting at least three states, leaving open the case of binary characters, and gave a straightforward brute-force parameterized algorithm for the problem of running time O(3 ^k n), where k is the number of bidirectional edges in the network and n is its size. In this paper, we first establish the NP-hardness of the binary case of the problem. Then we provide a more efficient parameterized algorithm for this case running in time O(2 ^k n ²). The presented algorithm is very simple, and utilizes some structural results and elegant operations developed in this paper that can be useful on their own in the design of heuristic algorithms for the problem. The analysis phase of the algorithm is very elegant using amortized techniques to show that the upper bound on the running time of the algorithm is much tighter than the upper bound obtained under a conservative worst-case scenario assumption. Our results bear significant impact on reconstructing evolutionary histories of languages—particularly from phonological and morphological character data, most of which exhibit at most two states (i.e., are binary), as well as on the design and analysis of parameterized algorithms. Research of I.A. Kanj was supported in part by DePaul University Competitive Research Grant.     

Enumerate and Expand: Improved Algorithms for Connected Vertex Cover and Tree Cover

We present a new method of solving graph problems related to Vertex Cover by enumerating and expanding appropriate sets of nodes. As an application, we obtain dramatically improved runtime bounds for two variants of the Vertex Cover problem. In the case of Connected Vertex Cover, we take the upper bound from O ^*(6 ^k ) to O ^*(2.7606 ^k ) without large hidden factors. For Tree Cover, we show a complexity of O ^*(3.2361 ^k ), improving over the previous bound of O ^*((2k) ^k ). In the process, faster algorithms for solving subclasses of the Steiner tree problem on graphs are investigated. Supported by the DFG under grant RO 927/6-1 (TAPI).     

Pseudo-Kernelization: A Branch-then-Reduce Approach for FPT Problems

Pseudo-kernelization is introduced in this paper as a new strategy for improving fixed-parameter algorithms. This new technique works for bounded search tree algorithms by identifying favorable branching conditions whose absence could be used to reduce the size of corresponding problem instances. Pseudo-kernelization applies well to hitting set problems. It can be used either to improve the search tree size of a 3-Hitting-Set algorithm from O^*(2.179^k) to O^*(2.05^k), or to improve the kernel size from k³ to 27k. In this paper the parameterized 3-Hitting-Set and Face Cover problems are used as typical examples.     

Maximum Induced Matchings for Chordal Graphs in Linear Time

The Maximum Induced Matching (MIM) Problem asks for a largest set of pairwise vertex-disjoint edges in a graph which are pairwise of distance at least two. It is well-known that the MIM problem is NP-complete even on particular bipartite graphs and on line graphs. On the other hand, it is solvable in polynomial time for various classes of graphs (such as chordal, weakly chordal, interval, circular-arc graphs and others) since the MIM problem on graph G corresponds to the Maximum Independent Set problem on the square G ^*=L(G)² of the line graph L(G) of G, and in some cases, G ^* is in the same graph class; for example, for chordal graphs G, G ^* is chordal. The construction of G ^*, however, requires time, where m is the number of edges in G. Is has been an open problem whether there is a linear-time algorithm for the MIM problem on chordal graphs. We give such an algorithm which is based on perfect elimination order and LexBFS.     

On the existence of subexponential parameterized algorithms

The existence of subexponential-time parameterized algorithms is examined for various parameterized problems solvable in time O(2^O(k)p(n)). It is shown that for each t?1, there are parameterized problems in FPT for which the existence of O(2^o(k)p(n))-time parameterized algorithms implies the collapse of W[t] to FPT. Evidence is demonstrated that Max-SNP-hard optimization problems do not admit subexponential-time parameterized algorithms. In particular, it is shown that each Max-SNP-complete problem is solvable in time O(2^o(k)p(n)) if and only if 3-SAT∈DTIME(2^o(n)). These results are also applied to show evidence for the non-existence of -time parameterized algorithms for a number of other important problems such as Dominating Set, Vertex Cover, and Independent Set on planar graph instances.     

Dynamic Programming for Minimum Steiner Trees

We present a new dynamic programming algorithm that solves the minimum Steiner tree problem on graphs with k terminals in time O^*(c^k) for any c > 2. This improves the running time of the previously fastest parameterized algorithm by Dreyfus-Wagner of order O^*(3^k) and the so-called "full set dynamic programming" algorithm solving rectilinear instances in time O^*(2.38^k).