Establishment of a quadruplex real-time PCR for screening of genetically modified tomatoes

With the increase in number of the genetically modified (GM) crops authorized worldwide and specific labeling legislation established by many countries, a reliable and efficient method for routine screening of raw material or processed food products needs to be developed. In this paper, a quadruplex quantitative real-time PCR (qPCR) system is described which allows simultaneous detection of one tomato endogenous gene and three most frequently used transgenic elements in GM products: cauliflower mosaic virus 35S promoter, Agrobacterium tumefaciens nopaline synthase terminator, and neomycin phosphotransferase II gene. The specificities of the assays are optimized and validated. In the quadruplex qPCR system, the detection ranges for all of the four genes were determined to be 8–80,000 copies per reaction. Finally, the established detection system was applied in amplification of exogenous and endogenous genes from 33 raw materials and 35 processed products samples. The results indicate that quadruplex qPCR method is feasible for screening of GM tomato products, even for some processed food. As this detection system could be easily applied to the detection of transgenic elements in other plant species, we expect it will meet the challenges of routine GM crop detection resulting from a rapid increase in the number of GM crops in the future.     

Development of an event-specific detection method for genetically modified rice Kefeng?6 by quantitative real-time PCR

The genetically modified (GM) rice Kefeng?6 has gained resistance against several rice pests by inserting the cpti and cry1Ac genes. As this transgenic line is not approved for import, processing and cultivation in the European Union (EU), sensitive and specific detection methods need to be available to monitor any illegal presence of Kefeng?6 in food products within the EU. The aim of this study was to develop and validate an event-specific detection method by means of quantitative real-time PCR (qPCR) for the detection of Kefeng?6 in foodstuff. A primer pair and hydrolysis probe were designed according to the right border junction sequence of the transgene. The qPCR assay was validated according to the ENGL/EURL-GMFF guidelines for GMO testing and is presented according to the MIQE guidelines. The in-house validation process resulted in a limit of detection of 5 DNA copies of the transgene with confidence intervals (95?%) between 0.07 and 0.52, a PCR efficiency of 105?% and a correlation coefficient (R ²) value of 0.9997. The specificity of the assay was tested by end-point PCR, gel electrophoresis and subsequent sequencing of the PCR products. By testing DNA of several GM and non-GM crops, cross reactivity of the assay was not observed. Further, 35 food products were analyzed for the presence of Kefeng?6 by means of the event-specific detection method. For 9 out of 35 samples, PCR products for Kefeng?6 DNA were observed.     

Development of an event-specific detection method for genetically modified rice Kefeng?6 by quantitative real-time PCR

The genetically modified (GM) rice Kefeng 6 has gained resistance against several rice pests by inserting the cpti and cry1Ac genes. As this transgenic line is not approved for import, processing and cultivation in the European Union (EU), sensitive and specific detection methods need to be available to monitor any illegal presence of Kefeng 6 in food products within the EU. The aim of this study was to develop and validate an event-specific detection method by means of quantitative real-time PCR (qPCR) for the detection of Kefeng 6 in foodstuff. A primer pair and hydrolysis probe were designed according to the right border junction sequence of the transgene. The qPCR assay was validated according to the ENGL/EURL-GMFF guidelines for GMO testing and is presented according to the MIQE guidelines. The in-house validation process resulted in a limit of detection of 5 DNA copies of the transgene with confidence intervals (95 %) between 0.07 and 0.52, a PCR efficiency of 105 % and a correlation coefficient (R ²) value of 0.9997. The specificity of the assay was tested by end-point PCR, gel electrophoresis and subsequent sequencing of the PCR products. By testing DNA of several GM and non-GM crops, cross reactivity of the assay was not observed. Further, 35 food products were analyzed for the presence of Kefeng 6 by means of the event-specific detection method. For 9 out of 35 samples, PCR products for Kefeng 6 DNA were observed.     

Analytical screening studies on irradiated food packaging

Foods may be irradiated in their final packaging and this process may affect the composition of the packaging and in turn affect the migration of substances into food. Headspace and liquid injection GC-MS and HPLC with time-of-flight MS have been used to identify and estimate levels of radiolytic products in irradiated finished plastic packaging materials. Fifteen retail packaging materials were studied. Investigations were carried out into the effect of different irradiation types (gamma and electron beam), irradiation doses (1, 3, 7 and 10 kGy) and dose rates (5 kGy s^–1 for electron beam and 0.4 and 1.85 kGy h^–1 for gamma) on the radiolytic products. Any differences seen in comparing the two ionising radiation types were attributed largely to the very different dose rates; for electron beam a 10 kGy dose was delivered in just 2 s whereas using gamma it took 5.4 h. Differences were also seen when comparing the same samples irradiated at different doses. Some substances were not affected by irradiation, others decreased in concentration and others were formed upon increasing doses of irradiation. These results confirm that irradiation-induced changes do occur in substances with the potential to migrate and that the safety of the finished packaging material following irradiation should be assessed.     

Monitoring of Bt11 and Bt176 genetically modified maize in food sold commercially in Brazil from 2005 to 2007

BACKGROUND: The first genetically modified (GM) maize lines were approved for trading in Brazil after December 2007 and they were T25, MON810, Bt11, NK603 and GA21. The polymerase chain reaction (PCR) method was employed to monitor the presence of Bt11 and nested PCR was used to detect the presence of Bt176 in 81 maize‐derived products (maize flour, corn meal, maize flour flakes and polenta) that were sold in Brazilian market from 2005 to 2007, before the release of GM maize in Brazil. RESULTS: The PCR detection limit for Bt11 was 10 g kg^?1 and for nested PCR of Bt176 it was 1 g kg^?1. All Brazilian samples analyzed showed no positive signal for these GM maize events. CONCLUSION: Bt11 and Bt176 GM maize lines were not detected by specific PCR in 81 maize‐derived food samples sold in Brazil from 2005 to 2007, before the commercial release of GM maize in Brazil. These Brazilian food industries were in compliance with the rules stipulated by the current legislation with respect to consumer requirements about GMO labeling. Copyright © 2010 Society of Chemical Industry     

Detection of Transgenic Atlantic and Coho Salmon by Real-time PCR

Genetic modifications (GM) have been applied to salmon to generate fast-growing strains for potential use in aquaculture. In November 2015, the first transgenic salmon (AquAdvantage® Atlantic salmon) was accepted for commercialization in the USA under defined conditions. The presence of GM food products in the marketplace stimulates the need for detection methods to allow screening for the presence of genetic modifications in seafood products. This paper first shows that it is possible to obtain amplifiable DNA from raw and processed products containing salmon. Detection methods by real-time PCR are proposed in this work. An endogenous gene target was designed to detect salmonid species DNA in samples. In addition, detection methods using real-time PCR were developed for two GM salmon possessing growth hormone transgenes: the AquAdvantage® Atlantic salmon (Salmo salar) developed by AquaBounty for commercial purposes, and the coho salmon (Oncorhynchus kisutch) developed for research purposes by Fisheries and Oceans Canada. The methods are able to detect at least 20 copies of the target. It was found however that one of the construct-specific methods for the AquAdvantage® salmon detection did not work on AquAdvantage® genomic DNA even though it works on the sequence published in GenBank. The other assay however was found to reliably detect AquAdvantage® transgenic sequences in genomic DNA.     

Irradiation Applications in Dairy Products: a Review

The demand for raw and fresh dairy products with the desired organoleptic characteristics and health benefits led to research in non-thermal processing technologies aiming to retain all the product qualities and nutrients. Irradiation is an emerging non-thermal technology used in destroying micro- and macroorganisms that might exist in food by exposure to either gamma (γ) rays from radioactive isotopes (cobalt⁶⁰ or caesium¹³⁷) or an electron accelerator (electron beam or X-radiation) under a controlled environment. With the endorsement of many international food and health organisations such as the Food and Agriculture Organization (FAO) and World Health Organization (WHO), irradiation is becoming more widely researched as a process to maintain quality, improve safety and reduce quarantine and post-harvest loss. Irradiation has the potential for allergenicity reduction and the provision of a sterile diet for immunocompromised patients. Unlike other food categories, the use of irradiation as a preservative technique on dairy products has received little attention due to the complexity of the product varieties. Whilst being accepted in some countries, the adoption of irradiation as an alternative measure of treating and preventing potential problems in the food chain faces strict opposition in many countries. In this review, the focus is on the radiation processing as an emerging technology and its specific application on dairy products.     

Effect of gamma and electron beam irradiation on the survival of pathogens inoculated into salted, seasoned, and fermented oyster

The objective of this study was to identify the efficacy of gamma and electron beam irradiation of the food-borne pathogens including 3-strain cocktail of Listeria monocytogenes (ATCC 19114, 19115, and 19111), Staphylococcus aureus (ATCC 6538, 25923, and 29213), and Vibrio parahaemolyticus (ATCC 17802, 33844, and 27969) in salted, seasoned, and fermented oyster (oyster Jeotkal, 8% salt), commercially available in the market. Irradiation (0, 0.5, 1, 2, and 5 kGy) significantly reduced the initial microbial level not only immediately after irradiation but also during storage at 10 °C for 4 weeks (P ≤ 0.05). No viable cell was detected at 5 kGy of irradiation at a detection limit of 10¹ CFU/g. Gamma irradiation was more effective than electron beam irradiation, and yielded D₁₀ values of 0.60, 0.71, and 0.29 kGy for L. monocytogenes, S. aureus, and V. parahaemolyticus, and those of electron beam irradiation were 0.69, 0.94, and 0.29 kGy, respectively. V. parahaemolyticus was most sensitive to irradiation and storage among all pathogens tested. Sensory quality was not affected by irradiation treatment. Results suggest that a low dose irradiation can improve the microbial quality and reduce the risk by the food-borne pathogens of oyster Jeotkal, which has limited alternative sterilization methods due to the temperature sensitivity of food products.     

New SYBR®Green methods targeting promoter sequences used for screening of several GM events pending for authorisation in Europe

Seen the growing number of genetically modified (GM) crops being developed, the need for cost- and time-effective detection methods is increasing to enable continuing the necessary effective control on food and feed products. This need can be achieved by performing an intensive screening combined with decision support tools like the CoSYPS matrix which permits reducing the number of events to be identified. To allow an extra covering power of the CoSYPS and to be able to include new EU-authorised GM events, two new SYBR^®Green real-time PCR (qPCR) methods targeting two promoter sequences (pNOS and pFMV) were developed. These methods were validated using acceptance parameters such as the specificity, sensitivity and repeatability. In addition, the methods were transferred to a second laboratory, namely the Institute for Health and Consumer Protection, to test the reproducibility. Furthermore, the applicability and practicability of the methods were tested by using proficiency test samples. The two methods allow a specific and sensitive detection of the targets in food and feed samples and can be used efficiently in different laboratories.     

A novel method for the detection of Roundup Ready™ soya using liquid chromatography–electrospray ionisation mass spectrometry

Current methods for the detection and quantification of genetically modified (GM) ingredients predominantly make use of enzyme-linked immunosorbent assay (ELISA) and polymerase chain reaction (PCR) based techniques. For PCR-based techniques, real-time detection systems represent the state of the art for quantitative measurement of DNA-based products. This study sought to assess the viability of using mass spectrometry (MS) for the detection and potential quantification of GM-derived material by developing an assay for the detection of Roundup Ready™ soya (RRS). This was based upon the indirect detection of event-specific PCR products using a single base pair extension followed by online clean-up and detection using liquid chromatography–electrospray–mass spectrometry (LC–ESI–MS). We were able to demonstrate that LC–ESI–MS detection provides conclusive identification of the primer extension products enabling the effective detection and differentiation of GM- and non-GM-derived material. This was carried out using both reference materials and real food matrices.     

Qualitative and Quantitative Detection of Protein and Genetic Traits in Genetically Modified Food

Due to the market introduction of genetically modified organisms (GMOs) in crops, foods, and ingredients, legislation worldwide came face to face with the question of the use and labeling requirements on GMO crops and their derivatives. In this review, protein- and DNA-based methods, such as enzyme-linked immunosorbent assay, western blots, and qualitative and quantitative polymerase chain reaction PCR (Q-PCR) are reviewed. Qualitative detection methods for genetically modified (GM) sequences in foods have evolved rapidly during the past years. The sensitivity of these systems is extremely high, even for processed foodstuffs. However, the availability of quantitative detection methods for GMO analysis is an important prerequisite for the introduction of threshold limits for GMOs in food. The recently introduced labeling threshold for GMOs in food ingredients by the European Union has forced official food control laboratories to apply quantitative PCR methods. Taking the precision of quantitative PCR detection methods into account, suitable sample plans and sample sizes for GMO analysis are discussed. As quantitative GMO detection methods measure GMO contents of samples in relation to reference material, priority must be given to international agreements and standardization on certified reference materials. The rapidly increasing number of GM foods on the market demands the development of more advanced multidetection systems, such as microarray technology. Challenges and problems arising from the inability to detect GM foods for which the modified sequence is unknown, the lengthy standardization procedures, and the need to continuously update databases comprising commercially available GM foods and the respective detection strategies are also discussed.     

Polymerase chain reaction (PCR) for the detection of celery (<Emphasis Type="Italic">Apium graveolens</Emphasis>) in food

A method based upon polymerase chain reaction (PCR) for the detection of celery (Apium graveolens) in food was developed. The method involves DNA isolation by chaotropic or non-chaotropic solid-phase extraction and PCR with primers oriented to the sequence of the nuclear gene encoding mannitol dehydrogenase. The PCR method was shown to be specific for celery, producing a 279 bp fragment with four celery varieties and negative results with other species commonly present together with celery in food products (16 samples). The detection limit of PCR was 490–1530 pg DNA, which corresponds to 10² genome copies. When evaluated with model samples of celery in meat pâtés, a detection limit of 0.1% (w/w) was determined. When used to analyse food products from the market (dried vegetable seasonings, dehydrated bouillons), all four products declared to contain celery were correctly identified as positive and all three products in which celery was not declared were identified as negative.     

电子束辐照杀菌对食用葛根粉品质的影响

为了明确电子束辐照杀菌对食用葛根粉品质的影响,以食用葛根粉为对象,研究了不同剂量（0、2.5、5.0、7.5、10.0、12.5 kGy）电子束辐照对其杀菌效果、营养品质、功能活性和物理性能的影响。结果表明:电子束辐照对食用葛根粉杀菌效果明显,且辐照剂量越大,微生物存活数越少,菌落总数的D₁₀值为2.68 kGy;不同剂量电子束辐照对食用葛根粉中一般营养成分（水分、灰分、蛋白质、淀粉、维生素B₁和B₂）、异黄酮类活性成分（葛根素、大豆苷、大豆苷元）以及羟自由基（·OH）清除率均无显著影响（P>0.05）;辐照后脂肪含量显著增加（P<0.05）,膳食纤维含量、白度、DPPH自由基清除率和还原力有所下降（P<0.05）,但总体变化幅度不大;多糖含量、溶解度和膨润力显著增大（P<0.05）,冻融稳定性显著增强（P<0.05）。因此,电子束辐照是一种有效的食用葛根粉灭菌方式,12.5 kGy以内电子束辐照不会对其营养品质及功能活性成分产生明显的破坏作用,且有望改善其作为食品加工原料的物理性能。本研究为电子束辐照技术在食用葛根粉及以其为原料加工产品中微生物的控制提供理论参考。     

Detection of GM Canola MS11, DP-073496-4, and MON88302 events using multiplex PCR coupled with capillary electrophoresis

As of 2020, 11 GM canola events have been authorized as food for humans in Korea. However, there are no simultaneous multiplex detection methods for 3 GM canola events (DP-073496-4, MON88302, and MS11). Thus, we established the multiplex polymerase chain reaction (PCR) method coupled with capillary electrophoresis to detect 3 GM canola events. To verify the specificity of event-specific primers, various GM crops of 3 GM soybean events, 6 GM maize events, 2 GM cotton events and 11 GM canola events were prepared. The limit of detection of the developed multiplex PCR was approximately 0.0125% for 3 GM canola events. Certified GM canola and stacked events were analyzed to validate the developed multiplex PCR. This study focuses on establishing multiplex PCR coupled with capillary electrophoresis for newly approved GM canola events and contributes to efficient monitoring GM canola samples in Korea.     

Development of three real-time PCR assays to detect peanut allergen residue in processed food products

Hypersensitivity to peanut is a public health problem, since the ingestion of even low amounts of peanut can trigger severe allergic reactions. Allergic consumers rely on the information provided on the label of foodstuffs to identify products that might endanger their health. In order to protect the allergic consumer methods are required for the detection of allergenic ingredients. For this purpose we have developed three real-time polymerase chain reaction (PCR) assays, based on TaqMan chemistry, that are capable of detecting peanut specific DNA sequences in food products. The peanut specific sequence targeted for detection is located within the gene family of the allergen Ara h 3. The occurrence of multiple Ara h 3 sequences in the peanut genome increases the chance to achieve a good sensitivity. DNA extraction is also known to affect detection by PCR, therefore the efficiency of several different DNA extraction methods was compared. The methods reported here are capable of detecting 2.5 pg peanut DNA (less than one copy of peanut genome equivalent) and all three assays were successfully applied to detect peanut traces in a model food product where they could detect 10 mg kg⁻¹ peanut.     

Duplex real-time PCR method for the detection of sesame (Sesamum indicum) and flaxseed (Linum usitatissimum) DNA in processed food products

The development of a duplex real-time polymerase chain reaction (PCR) method allowing the simultaneous detection of sesame and flaxseed DNA in commercial food products is described. This duplex real-time PCR technique is based in the design of sesame- and flaxseed-specific primers based on the ITS1 region and two TaqMan fluorescent probes. The method was positive for sesame and flaxseed, and showed no cross-reactivity for all other heterologous plant and animal species tested. Sesame and flaxseed could be detected in a series of model samples with defined raw and heat-treated sesame in flaxseed, and flaxseed in sesame, respectively, with detection limits of 1.3 mg kg^?1 for sesame and 1.4 mg kg^?1 for flaxseed. The applicability of the assay for determining sesame and flaxseed in different food matrices was investigated by analysing a total of 238 commercial foodstuffs. This PCR method is useful for highly selective and sensitive detection of traces of sesame and flaxseed in commercial food products.     

Development of two screening duplex PCR assays for genetically modified organism quantification using multiplex real-time PCR master mixes

Since 2001, the traceability and labelling of genetically modified organism (GMO) food and feed derived products are obligatory in the European Union. Genetically modified organisms (GMO) are commonly detected via PCR tests. These tests typically involve several steps: (1) screening (2) construct specific (3) event specific and (4) reference gene. Screening tests are based on sequences frequently used for GM development, allowing for the detection of a large number of GMOs. To improve GMO detection efficiency, using specific multiplex master mixes, we developed two real-time PCR screening duplex PCR assays for the detection of P35S/Tnos and Pnos/T35S sequences. By combining these tests, we were able to reduce the time and cost of analysis. For the Pnos/T35S duplex, good sensitivity was obtained using one of the mixes compared to the others. Both duplexes had 100% specificity when tested on DNA from GM maize, rapeseed and soybean. When the duplexes were tested on DNA containing various amounts of GM maize and soybean, the corresponding targets were detected. The detection limit of our methods was found to be between 2 and 8 haploid genome copies for both P35S/Tnos and Pnos/T35S tests. In summary, with high efficiency and good linearity, the proposed two screening duplexes allow for more efficient GMO detection.     

转基因烟草检测方法研究进展

随着烟草国际贸易的发展,转基因烟草产品的检测成为烟草贸易关注的热点。目前对于转基因烟草产品的检测方法主要有两种,一种是以DNA为基础的PCR法,另一种是以蛋白质为基础的ELISA法。笔者主要论述了转基因烟草PCR检测法的研究进展,这对开展转基因烟草检测的研究工作有一定的参考价值。     

60Co-γ射线和电子束辐照对红碎茶杀菌效果与品质的影响

采用不同剂量的^(60 )Co-γ射线和电子束辐照红碎茶,分析其对红碎茶中微生物、品质成分和感官品质的影响。结果表明,2种辐照方式均能有效抑制红碎茶中微生物污染情况,^(60 )Co-γ射线和电子束辐照红碎茶菌落总数D₁₀值分别为1.70,2.66kGy,^(60 )Co-γ射线对红碎茶的杀菌能力强于电子束辐照。2种辐照方式不会对红碎茶水浸出物和氨基酸产生明显影响,但能引起茶多酚和咖啡碱含量减少,可溶性糖含量增加,且电子束辐照对茶多酚、咖啡碱和可溶性糖的影响大于^(60 )Co-γ射线辐照的;^(60 )Co-γ射线辐照后红碎茶灰分含量增加,电子束辐照后红碎茶灰分含量无明显变化,^(60 )Co-γ射线对红碎茶的灰分含量影响强于电子束辐照;2种辐照方式对红碎茶感官品质均有一定提升。综上,^(60 )Co-γ射线和电子束辐照对红碎茶卫生品质的影响存在一定差异性。     

Detection method for genetically modified papaya using duplex PCR

A simple and rapid method for the identification of genetically modified (GM) papaya, derived from Line 55-1, was developed by modifying the Japanese official PCR method. Genomic DNA was directly extracted from the fresh fruit without the lyophilization step, using a commercial silica-based kit. To develop a duplex PCR method which simultaneously detects the GM papaya-specific gene and the intrinsic papain gene, the papain 2-5'/3' (amplicon size; 184 bp) primer pair for the detection of the papain gene was newly designed within the region of the products (211 bp) amplified using the papain 1-5'/-3' primer pair adopted in the Japanese official PCR method. To detect the GM papaya-specific gene, the primer pair Nos C-5'/CaM N-3' described in the Japanese official method was used. The DNA sequences of the GM papaya gene and the intrinsic papain gene were co-amplified using the PCR method in a single tube. The developed duplex PCR method allows the simultaneous detection of the products by means of agarose gel electrophoresis or microchip electrophoresis. The proposed method for GM papaya identification is simple and rapid.