Genetic evaluation of Holstein sires and maternal grandsires in the United States for perinatal survival

Stillbirth, defined as a calf that dies just prior to, during, or within 48 h of parturition, represents a reoccurring concern among breeders of dairy cattle in the United States. About 11% of parturitions of primiparous Holstein cows result in the death of a calf; 5.7% in multiparous cows. Genetic evaluations can be reported as perinatal survival to 48 h to emphasize the positive information about the trait. The purpose of this research was to: 1) estimate genetic parameters by restricted maximum likelihood for perinatal survival rates; 2) characterize the genetic evaluation of sires for the perinatal survival of their progeny and maternal grandsires for the perinatal survival of their daughters progeny; and 3) estimate genetic trends from 1984 to 1994. Data (n = 666,339) were from the National Association of Animal Breeders calving ease database. Over 600 new young sires were available each year. The binomial response variable, 1 = alive, 0 = stillborn within 48 h of parturition was analyzed by using a sire-maternal grandsire linear mixed model. The model included fixed effects for sex of calf, dystocia, and season of birth, and gestation length as a covariate; correlated random effects of sire and maternal grandsire; and uncorrelated random effects of herd-years. Parturitions of primiparous and multiparous cows were analyzed separately. In primiparous cows, heritability estimates were 1.1 and 2.2% for sire of the calf and maternal grandsire, respectively. The genetic correlation between sire and maternal grandsire predicted transmitting ability (PTA) for perinatal survival, was 0.31; simple product moment correlations among sire-MGS PTA were 0.43 and 0.46 for primiparous and multiparous cows, respectively. The PTA for sire of the calf ranged from -2.9 (lower survival) to 2.8% (higher survival). Mean PTA from 1984 to 1994 was quite variable from year to year. Evidence showed a slightly negative, but nonsignificant, genetic trend in perinatal survival (-0.04% per year for sires and -0.02% per year for maternal grandsires). Estimates of genetic parameters and genetic trends for data from multiparous cows are also reported. Correlations among PTA for perinatal survival, milk yield, and calving ease are given.     

Genetic associations between clinical mastitis and somatic cell score in early first-lactation cows

The objectives of this study were to examine genetic associations between clinical mastitis and somatic cell score (SCS) in early first-lactation cows, to estimate genetic correlations between SCS of cows with and without clinical mastitis, and to compare genetic evaluations of sires based on SCS or clinical mastitis. Clinical mastitis records from 15 d before to 30 d after calving and first test-day SCS records (from 6 to 30 d after calving) from 499,878 first-lactation daughters of 2,043 sires were analyzed. Results from a bivariate linear sire model analysis of SCS in cows with and without clinical mastitis suggest that SCS is a heterogeneous trait. Heritability of SCS was 0.03 for mastitic cows and 0.08 for healthy cows, and the genetic correlation between the 2 traits was 0.78. The difference in rank between sire evaluations based on SCS of cows with and without clinical mastitis varied from −994 to 1,125, with mean 0. A bivariate analysis with a threshold-liability model for clinical mastitis and a linear Gaussian model for SCS indicated that heritability of liability to clinical mastitis is at least as large as that of SCS in early lactation. The mean (standard deviation) of the posterior distribution of heritability was 0.085 (0.006) for liability to clinical mastitis and 0.070 (0.003) for SCS. The posterior mean (standard deviation) of the genetic correlation between liability to clinical mastitis and SCS was 0.62 (0.03). A comparison of sire evaluations showed that genetic evaluation based on SCS was not able to identify the best sires for liability to clinical mastitis. The association between sire posterior means for liability to clinical mastitis and sire predicted transmitting ability for SCS was far from perfect.     

Overview of progeny-test programs of artificial-insemination organizations in the United States

Characteristics of progeny-test (PT) programs of artificial insemination (AI) organizations in the United States were examined for changes since 1960. Mean number of bulls that were progeny tested annually by major AI organizations during the mid 1990s was 11 for Ayrshires, 24 for Brown Swiss, 21 for Guernseys, 1261 for Holsteins, 112 for Jerseys, and 3 for Milking Shorthorns. Mean parent age at progeny-test (PT) bull birth decreased except for Milking Shorthorns; mean age of maternal grandsire at bull birth decreased for Holsteins and Jerseys but increased for other breeds. For Holsteins, mean ancestor ages at PT bull birth were 85 mo for sires, 47 mo for dams, and 136 mo for maternal grandsires during the mid 1990s. Percentage of PT bulls that resulted from embryo transfer increased to 78% for Brown Swiss and 80% for Holsteins by 1999. Inbreeding in PT bulls increased over time and ranged from 3.8% for Brown Swiss to 6.4% for Jerseys (5.6% for Holsteins) during the mid 1990s. Mean numbers of daughters and herds per PT bull generally declined except for Holsteins, which increased during the early 1990s to 61 daughters and 44 herds. Mean number of states in which PT daughters are located increased; for Holstein PT bulls during 1994, 22% of daughters were in California, 13% in Wisconsin, 12% in New York, and 10% in Pennsylvania and Minnesota. Percentage of first-lactation cows that were PT daughters increased and ranged from 6% for Milking Shorthorns to 22% for Ayrshires (14% for Holsteins) during 1998. Percentage of PT daughters that were registered declined and was 19% for Holsteins and around 80% for other breeds.     

Analysis of the relationship between somatic cell score and functional longevity in Canadian dairy cattle

The aim of this study was to assess the level of somatic cell count (SCC) and to explore the impact of somatic cell score (SCS) on the functional longevity of Canadian dairy cattle by using a Weibull proportional hazards model. Data consisted of 1,911,428 cows from 15,970 herds sired by 7,826 sires for Holsteins, 80,977 cows in 2,036 herds from 1,153 sires for Ayrshires, and 53,114 cows in 1,372 herds from 1,758 sires for Jerseys. Functional longevity was defined as the number of days from the first calving to culling, death, or censoring. The test-day SCC was transformed to a linear score, and the resulting SCS were averaged within each lactation. The average SCS were grouped into 10 classes. The statistical model included the effects of stage of lactation; season of production; annual change in herd size; type of milk recording supervision; age at first calving; effects of milk, fat, and protein yields, calculated as within-herd-year-parity deviations; herd-year-season of calving; SCS class; and sire. The relative culling rate was calculated for animals in each SCS class after accounting for the aforementioned effects. The overall average SCC for Holsteins was 167,000 cells/mL, for Ayrshires was 155,000 cells/mL, and for the Jerseys was 212,000 cells/mL. In all breeds there were no appreciable differences in the relative risk of culling among classes of SCS breed averages (i.e., up to a SCS of 5). However, as the SCS increased beyond the breed average, the relative risk of cows being culled increased considerably. For instance, Holstein, Ayrshire, and Jersey cows with the highest classes of SCS had, respectively, a 4.95, 6.73, and 6.62 times greater risk of being culled than cows with average SCS.     

Implementation of a routine genetic evaluation for longevity based on survival analysis techniques in dairy cattle populations in Switzerland

Genetic evaluation of sires for functional longevity of their daughters based on survival analysis has been implemented in the populations of Braunvieh, Simmental, and Holstein cattle in Switzerland. A Weibull mixed sire-maternal grandsire survival model was used to estimate breeding values of sires with data on cows that calved since April 1, 1980. Data on Braunvieh and Simmental cows included about 1.1 million records, data on Holstein cows comprised about 220,000 records. Data contained approximately 20 to 24% right-censored records and 6 to 9% left-truncated records. Besides the random sire and maternal grandsire effects, the model included effects of herd-year-season, age at first calving, parity, stage of lactation, alpine pasturing (Braunvieh and Simmental), and relative milk yield and relative fat and protein percentage within herd to account for culling for production. Heritability of functional longevity, estimated on a subset of data including approximately 150,000 animals, were 0.181, 0.198, and 0.184 for Braunvieh, Simmental, and Holstein, respectively. Breeding values were estimated for all sires with at least six daughters or three granddaughters in the data. Breeding values of sires are expressed in months of functional productive life and published in sire catalogs along with breeding values for production traits.     

Alternative somatic cell count traits to improve mastitis resistance in Canadian Holsteins

The objective of this study was to investigate whether alternative somatic cell count (SCC) traits are suitable as mastitis indicators in Canadian Holsteins. Mastitis data recorded by producers were available from the national dairy cattle health system in Canada. Mastitis was defined as a binary variable based on whether or not the cow had at least one mastitis case in the period from calving to 305 d after calving. The analyzed alternative SCC traits included mean somatic cell score (SCS) from different time periods, maximum SCS, standard deviation of SCS, excessive test-day SCC, and a peak pattern of test-day records with suspicion of mastitis. Data of 53,626 first-lactation Holstein cows from 1,666 herds across Canada were analyzed using linear animal models. A heritability of 0.02 was obtained for mastitis. For both mean SCS in early and late lactation, a heritability of 0.11 was estimated. Heritabilities of various patterns of SCC ranged from 0.01 to 0.07. Estimated genetic correlations were 0.69 and 0.68 between mastitis and mean SCS in early and late lactation, respectively. Higher genetic correlations were found between mastitis and the different SCC patterns (0.82 to 0.91). Sires with high breeding values for mastitis resistance had consistently higher percentage of healthy daughters than sires with low breeding values for mastitis resistance. Breeding values for mean SCS in early lactation, standard deviation of SCS, and an excessive test-day SCC pattern (at least one SCC test-day above 500,000) were the best predictors of the breeding value for mastitis resistance and explained in total 41% of the variation in relative breeding values for mastitis resistance. The results demonstrated that patterns of SCC provide additional information for genetic evaluations of mastitis resistance that cannot be explained by mean SCS alone.     

Undesired phenotypic and genetic trend for stillbirth in Danish Holsteins

The primary aim of this study was to evaluate the phenotypic and genetic trends for stillbirth in Danish Holsteins. Trends of calving difficulty and calf size were also evaluated. The second aim was to compare predicted transmitting abilities (PTA) of sires for stillbirth using a linear and a threshold model. Direct and maternal genetic effects were modeled by fitting correlated additive genetic effects of the sire and the maternal grandsire (MGS). For both the calf and the dam, covariates of breed proportions of Holstein-Friesian (HF) and the heterozygosity between HF and the original Danish Black and White (ODBW) were included. Records from 1.8 million first-calving Danish Holstein cows calving from 1985 to 2002 were used. In this period, the overall frequency of stillbirth increased from 0.071 to 0.090. An unfavorable genetic trend of stillbirth was found for both the direct and maternal effect. The background for the genetic trends was an intense use of HF sires as sires of sons, which increased the proportion of HF genes to 94% in the Danish Holstein calves born in 2002. The effect of the imported HF genes was higher direct effects of calf size, calving difficulty, and stillbirth compared with the ODBW genes. The maternal effect of stillbirth was poorer for HF than for ODBW even though HF had a better maternal calving performance than ODBW. The threshold and the linear models showed almost similar predictions of transmitting abilities of sires.     

Relationships Between Sires and Sons for Evaluations from First,All, and Later Records

January 1984 Modified Contemporary Comparison sire evaluations for first, all, and later records were used to create sire-son pairs in five dairy breeds. Each evaluation for each bull included 10 or more daughters. Regressions of son on sire for evaluations for first, all, or later records exceeded the expectation of .5 and were most divergent for Jerseys and Brown Swiss. Regressions and coefficients of determination were generally highest when sire's evaluation based on all records predicted sons’ evaluations from first, all, or later records. Regression of son on sire for difference in evaluations (later minus first) was positive in all breeds, ranging from .08 to .10, and was significant for all breeds except Brown Swiss. Coefficients of determination were low (.01 to .02). Both regression of son on sire for difference and coefficient of determination increased with son's Repeatability, with a regression of .33 and a coefficient of determination of .09 for sons over 99% Repeatability, Regressions for 8,055 Holsteins with evaluations for sires and maternal grandsires on those ancestors were .46 to .54 for sires and .25 to .31 for maternal grandsires. Regressions of son's evaluation on pedigree index were .94 for first, 1.05 for all, and 1.12 for later lactations.     

Genetic relationship between culling, milk production, fertility, and health traits in Norwegian red cows

First-lactation records on 836,452 daughters of 3,064 Norwegian Red sires were used to examine associations between culling in first lactation and 305-d protein yield, susceptibility to clinical mastitis, lactation mean somatic cell score (SCS), nonreturn rate within 56 d in heifers and primiparous cows, and interval from calving to first insemination. A Bayesian multivariate threshold-linear model was used for analysis. Posterior mean of heritability of liability to culling of primiparous cows was 0.04. The posterior means of the genetic correlations between culling and the other traits were −0.41 to 305-d protein yield, 0.20 to lactation mean SCS, 0.36 to clinical mastitis, 0.15 to interval from calving to first insemination, −0.11 to 56-d nonreturn as heifer, and −0.04 to 56-d nonreturn as primiparous cow. As much as 66% of the genetic variation in culling was explained by genetic variation in protein yield, clinical mastitis, interval of calving to first insemination, and 56-d nonreturn in heifers, whereas contribution from the SCS and 56-d nonreturn as primiparous cow was negligible, after taking the other traits into account. This implies that for breeds selected for a broad breeding goal, including functional traits such as health and fertility, most of the genetic variation in culling will probably be covered by other traits in the breeding goal. However, in populations where data on health and fertility is scarce or not available at all, selection against early culling may be useful in indirect selection for improved health and fertility. Regression of average sire posterior mean on birth-year of the sire indicate a genetic change equivalent to an annual decrease of the probability of culling in first-lactation Norwegian Red cattle by 0.2 percentage units. This genetic improvement is most likely a result of simultaneous selection for improved milk yield, health, and fertility over the last decades.     

Relationships of sire predicted transmitting ability for somatic cell score with measures of daughter performance.

The relationship between sire predicted transmitting ability (PTA) for somatic cell score (SCS) and occurrence of mastitis in daughters was characterized with 304 Holsteins first freshening since 1991 in the Virginia Tech dairy herd. No direct sire selection for PTA SCS was practiced in the herd. Linear regressions of first lactation average SCS (1.3), number of cases of mastitis (0.80), days clinical (7.0), and number of treatments for mastitis (2.0) on PTA SCS were significant. Linear regression coefficients for second and third lactations were generally positive, but like quadratic and cubic coefficients in this study, were not significant. Relationship of sire PTA SCS and measures of lifetime (84 mo opportunity) performance were determined for 2,494,195 Holsteins born between 1979 and 1987. Linear coefficients from regression on PTA SCS for number of lactations (-0.31), days of productive life (-87.0), total days in milk (-72.2), lifetime milk (-1609.1), fat (-80.7), and protein (-48.2) production, relative net income adjusted for opportunity cost for fluid markets (+13.47), first lactation average SCS (+1.00), and first lactation mature equivalent milk (+429.9) were different from zero. Partial regressions holding PTA milk or PTA protein constant were substantially larger than linear coefficients. When PTA productive life was held constant, the relationship between PTA SCS and measures of herd life and lifetime yield became positive, and relative net income adjusted for opportunity cost variables became moderately positive. One of the major expenses associated with higher susceptibility (higher PTA SCS) may be shorter herd life.     

Genetic analysis of longitudinal trajectory of clinical mastitis in first-lactation Norwegian cattle

Clinical mastitis records for 36,178 first-lactation daughters of 245 Norwegian Cattle (NRF) sires were analyzed with a Bayesian longitudinal threshold model. For each cow, the period going from 30 d before calving to 300 d after calving was divided into 11 intervals of 30 d length each. Absence or presence of clinical mastitis within each interval was scored as "0" or "1", respectively. A Bayesian threshold model consisting of a set of explanatory variables plus Legendre polynomials on time of order four was used to describe the trajectory of liability to clinical mastitis. Heritability ranged between 0.07 and 0.13 before calving, from 0.04 to 0.15 during the first 270 d after calving, and increased sharply thereafter, as a consequence of the form of the polynomial. Genetic correlations between adjacent days were close to 1, and decreased when days were further apart. Most genetic correlations were moderate to high. A measure of probability of future daughters contracting clinical mastitis during lactation was computed for each sire. A typical curve had a peak near calving followed by a decrease thereafter. The best sires had a low peak around calving and a low expected probability of mastitis among daughters throughout lactation. Expected fraction of days without mastitis was derived from the probability curves and used for ranking of sires. Rank correlations with genetic evaluations of sires obtained from cross-sectional models were high. However, sire selection was affected markedly, especially at high selection intensity. An advantage of the longitudinal model for clinical mastitis is its ability to take multiple treatments and time aspects into account.     

Analysis of milk urea nitrogen and lactose and their effect on longevity in Canadian dairy cattle

The aim of this study was to assess the phenotypic level of lactose and milk urea nitrogen concentration (MUN) and the association of these traits with functional survival of Canadian dairy cattle using a Weibull proportional hazards model. A total of 1,568,952 test-day records from 283,958 multiparous Holstein cows from 4,758 herds, and 79,036 test-day records from 26,784 multiparous Ayrshire cows from 384 herds, calving from 2001 to 2004, were used for the phenotypic analysis. The overall average lactose percentage and MUN for Ayrshires were 4.49% and 12.20 mg/dL, respectively. The corresponding figures for Holsteins were 4.58% and 11.11 mg/dL. Concentration of MUN increased with parity number, whereas lactose percentage decreased in later parities. Data for survival analysis consisted of 39,536 first-lactation cows from 1,619 herds from 2,755 sires for Holsteins and 2,093 cows in 228 herds from 157 sires for Ayrshires. Test-day lactose percentage and MUN were averaged within first lactation. Average lactose percentage and MUN were grouped into 5 classes (low, medium-low, medium, medium-high, and high) based on mean and standard deviation values. The statistical model included the effects of stage of lactation, season of production, the annual change in herd size, type of milk-recording supervision, age at first calving, effects of milk, fat, and protein yields calculated as within herd-year-parity deviations, herd-year-season of calving, lactose percentage and MUN classes, and sire. The relative culling rate was calculated for animals in each class after accounting for the remaining effects included in the model. Results showed that there was a statistically significant association between lactose percentage and MUN in first lactation with functional survival in both breeds. Ayrshire cows with high and low concentration of MUN tended to be culled at a higher than average rate. Instead, Holstein cows had a linear association, with decreasing relative risk of culling with increasing levels of MUN concentration. The relationship between lactose percentage and survival was similar across breeds, with higher risk of culling at low level of lactose, and lower risk of culling at high level of lactose percentage.     

Comparison between a Weibull proportional hazards model and a linear model for predicting the genetic merit of US Jersey sires for daughter longevity

Predicted transmitting abilities (PTA) of US Jersey sires for daughter longevity were calculated using a Weibull proportional hazards sire model and compared with predictions from a conventional linear animal model. Culling data from 268,008 Jersey cows with first calving from 1981 to 2000 were used. The proportional hazards model included time-dependent effects of herd-year-season contemporary group and parity by stage of lactation interaction, as well as time-independent effects of sire and age at first calving. Sire variances and parameters of the Weibull distribution were estimated, providing heritability estimates of 4.7% on the log scale and 18.0% on the original scale. The PTA of each sire was expressed as the expected risk of culling relative to daughters of an average sire. Risk ratios (RR) ranged from 0.7 to 1.3, indicating that the risk of culling for daughters of the best sires was 30% lower than for daughters of average sires and nearly 50% lower than than for daughters of the poorest sires. Sire PTA from the proportional hazards model were compared with PTA from a linear model similar to that used for routine national genetic evaluation of length of productive life (PL) using cross-validation in independent samples of herds. Models were compared using logistic regression of daughters' stayability to second, third, fourth, or fifth lactation on their sires' PTA values, with alternative approaches for weighting the contribution of each sire. Models were also compared using logistic regression of daughters' stayability to 36, 48, 60, 72, and 84 mo of life. The proportional hazards model generally yielded more accurate predictions according to these criteria, but differences in predictive ability between methods were smaller when using a Kullback-Leibler distance than with other approaches. Results of this study suggest that survival analysis methodology may provide more accurate predictions of genetic merit for longevity than conventional linear models.     

Uridine monophosphate synthase of Jersey bulls

Fifteen Jersey sires, with significant impact on the breed in the United States, were assayed for activity of uridine monophosphate (UMP) synthase. Six of these bulls were the highest ranking Jersey bulls, as July 1987, with cheese yield dollars averaging $165. These 15 bulls sired over one-third of all Jersey sons registered in 1986 and 1987 and have registered approximately 14,000 of the 37,000 lactating daughters contributing to active AI sire evaluations in 1988. These bulls represent a cross-section of the Jersey breed as they have 11 different sires; 7 different, additional maternal grandsires; and their five-generation inbreeding coefficients average 1.5%. Activity of UMP synthase was 3.14 plus or minus .24 units/ml with a range from 2.74 to 3.58 units/ml. The coefficient of variation of 7.7% was slightly less than previously reported coefficients of variation for Holsteins. All these Jersey sires had activities within normal expectations, above delimiter of two thirds of average, and none should be considered heterozygous for UMP synthase. Although this is insufficient proof of absence of the undesirable UMP synthase allele among Jerseys, it is reassuring that no heterozygotes were found among these popular Jersey sires.     

Reproduction, mastitis, and body condition of seasonally calved Holstein and Jersey cows in confinement or pasture systems

Dairy cows in confinement and pasture-based feeding systems were compared across four spring-calving and three fall-calving replicates for differences in reproduction, mastitis, body weights, and body condition scores. Feeding systems and replicates included both Jersey and Holstein cows. Cows in confinement were fed a total mixed ration, and cows on pasture were supplemented with concentrates and provided baled hay or haylage when pasture supply was limiting. Breeding periods were for 75 d in spring or fall. Reproductive performance did not differ significantly due to feeding system or season. Jerseys had higher conception rates (59.6 vs. 49.5 +/- 3.3%) and higher percentages of cows pregnant in 75 d (78.1 vs. 57.9 +/- 3.9%) than Holsteins. Cows in confinement had 1.8 times more clinical mastitis and eight times the rate of culling for mastitis than did cows on pasture. Jerseys had half as many clinical cases of mastitis per cow as Holsteins. Only 41 +/- 5% of confinement Holsteins remained for a subsequent lactation, starting within the defined calving season compared with 51 +/- 5% of pastured Holsteins and 71 and 72 +/- 5% of Jerseys, respectively. Body weights and condition scores were generally higher for confinement cows than pastured cows, and Jerseys had higher condition scores and lower body weights than Holsteins. In summary, pastured cows had fewer clinical cases of mastitis, lower body condition scores, and lower body weights than confinement cows. Holsteins were less likely to rebreed, had more mastitis, higher culling rates, and lower body condition scores than Jerseys.     

Genetic change for clinical mastitis in Norwegian cattle: a threshold model analysis

Records of clinical mastitis on 1.6 million first-lactation daughters of 2,411 Norwegian Cattle sires that were progeny tested from 1978 through 1998 were analyzed with a threshold model. The main objective was to infer genetic change for the disease in the population. A Bayesian approach via Gibbs sampling was used. The model for the underlying liability had age at first calving, month x year of calving, herd x 3-year-period, and sire of the cow as explanatory variables. Posterior mean (SD) of heritability of liability to clinical mastitis was 0.066 (0.003). Genetic evaluations (posterior means) of sires both in the liability and observable scales were computed. Annual genetic change of liability to clinical mastitis for progeny tested bulls born from 1973 to 1993 was assessed. The linear regression of mean sire effect on year of birth had a posterior mean (SD) of -0.00018 (0.0004), suggesting a nearly constant genetic level for clinical mastitis. However, an analysis of sire posterior means by birth-year of daughters indicated an approximately constant genetic level in the cow population from 1976 to 1990 (-0.02%/yr), and a genetic improvement thereafter (-0.27%/yr). This reflects more emphasis on mastitis in selection of bulls in recent years. Corresponding results obtained with a standard linear model analysis were -0.01% and -0.23% per year, respectively (regression of sire predicted transmitting ability on birth-year of daughters). Genetic change seems to be slightly understated with the linear model, assuming the threshold model holds true.     

Genetic evaluation of mastitis in dairy cattle using linear models, threshold models, and survival analysis: a simulation study

The objective was to study, by simulation, whether survival analysis results in a more precise genetic evaluation for mastitis in dairy cattle than cross-sectional linear models and threshold models by using observation periods for mastitis of 2 lengths (the first 150 d of lactation, and the full lactation, respectively). True breeding values for mastitis liability on the underlying scale were simulated for daughters of 400 sires (average daughter group size, 60 or 150), and the possible event of a mastitis case within lactation for each cow was created. For the linear models and the threshold models, mastitis was defined as a binary trait within either the first 150 d of lactation or the full lactation. For the survival analysis, mastitis was defined as the number of days from calving to either the first case of mastitis (uncensored record) or to the day of censoring (i.e., day of culling, lactation d 150 or day of next calving; censored record). Cows could be culled early in lactation (within 10 d after calving) for calving-related reasons or later on because of infertility. The correlation between sire true breeding values for mastitis liability and sire predicted breeding values was greater when using the full lactation data (0.76) than when using data from the first 150 d (0.70) with an average of 150 daughters per sire. The corresponding results were 0.60 and 0.53, respectively, with an average of 60 daughters per sire. Under these simulated conditions, the method used had no effect on accuracy. The higher accuracy of sire breeding values can be translated into a greater genetic gain, unless counteracted by a longer generation interval.     

Genetic evaluation of dairy sires for milking duration using electronically recorded milking times of their daughters

The potential of using electronically recorded data from on-farm milking parlor and herd management software programs for genetic evaluation of dairy sires for milking duration of their daughters was assessed in the present study. Single measurements of milking duration were collected weekly from 29 herds between June 1, 2003 and April 1, 2004. These included 73,547 observations corresponding to 10,152 Holstein cows from 1551 sires. Average milking duration for a single milking in our data set was 4.5 min. Estimated heritability of milking duration was 0.17, and predicted transmitting abilities (PTA) of individual sires ranged from -0.48 min for sires with the fastest milking daughters to 0.59 min for sires with the slowest milking daughters. The correlation between PTA for milking duration and PTA for somatic cell score (SCS) was -0.15, indicating that sires whose daughters milk most quickly also tend to transmit higher SCS to their progeny. Correlations between PTA milking duration and PTA for teat placement and teat length were -0.14 and 0.20, respectively, indicating that sires that transmit wide teat placement and long teats tend to have daughters that milk slowly. Based on the results presented herein, it appears that genetic selection based on objective, electronically recorded milking times is possible. This approach would greatly improve the quality and efficiency of data collection relative to conventional evaluations of milking speed, which are based on farmer surveys. The number of herds currently equipped to routinely capture milking times is limited, but this number is increasing very rapidly. Future research should focus on refinement of data reporting and validation systems, as well as estimation of the economic value of milking duration. This trait may have an intermediate optimum, because cows that milk too slowly will disrupt parlor flow and reduce milking efficiency, but cows that milk too quickly may be at greater risk for mastitis.     

Milk production and economic measures in confinement or pasture systems using seasonally calved Holstein and Jersey cows

This 4-yr study examined total lactation performance of dairy cows in two feeding systems: pasture-based and confinement. Spring and fall calving herds were used and each seasonal herd had 36 cows on pasture and 36 cows in confinement with 282 Holstein and 222 Jersey cows included over seven seasonal replicates. Pasture-fed cows received variable amounts of grain and baled haylage depending upon pasture availability. Confinement cows received a total mixed ration with corn silage as the primary forage. Data were collected on milk production, feed costs, and other costs. Pasture-fed cows produced 11.1% less milk than confinement cows. Across treatments, Jerseys produced 23.3% less milk than Holsteins, but calving season and various interactions were not significant. Feed costs averaged $0.95/cow per day lower for pastured cows than confinement cows. Feed costs were lower for Jerseys than Holsteins and for cows calving in spring. Income over feed costs averaged $7.05 +/- 0.34 for confinement Holsteins, $6.89 +/- 0.34 for pastured Holsteins, $5.68 +/- 0.34 for confinement Jerseys, and $5.36 +/- 0.34 for pastured Jerseys; effects of breed were significant but treatment, season, and interactions were not. Economic factors such as labor for animal care, manure handling, forage management, and cow culling rates favored pastured cows. Higher fertility and lower mastitis among Jerseys partially offsets lower income over feed cost compared with Holsteins. Milk production was lower in this study for pasture-based systems but lower feed costs, lower culling costs, and other economic factors indicate that pasture-based systems can be competitive with confinement systems.     

Heritability of clinical mastitis incidence and relationships with sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield

The objective of this study was to determine the relationships among daughter clinical mastitis during first and second lactations and sire transmitting abilities for somatic cell score, udder type traits, productive life, and protein yield. Data on clinical mastitis during first lactation were available for 1795 daughters (in six Pennsylvania herds, one Minnesota herd, and one Nebraska herd) of 283 Holstein sires. Data on clinical mastitis during second lactation were available for 1055 of these daughters. A total of 479 cows had 864 clinical episodes during first lactation, and 230 cows had 384 clinical episodes during second lactation. Clinical mastitis incidence and the total number of clinical episodes during each lactation were regressed on herd-season of calving (a classification variable), age at first calving, lactation length, and sire transmitting abilities taken one at a time. Linear effects, nonlinear effects, and odds ratios were estimated for sire transmitting abilities. Separate analyses were conducted on dependent variables that considered clinical mastitis from: all organisms, coagulase-negative staphylococci, coliform species, streptococci other than Streptococcus agalactiae, and the most common environmental organisms (coliform species and streptococci other than Streptococcus agalactiae). Heritability of clinical mastitis ranged from 0.01 to 0.42. Daughters of sires that transmit the lowest somatic cell score had the lowest incidence of clinical mastitis and the fewest clinical episodes during first and second lactations. Daughters of sires that transmit longer productive life, shallower udders, deeper udder cleft, and strongly attached fore udders had either fewer clinical episodes or lower clinical mastitis incidence during first and second lactations. The incidence of clinical mastitis and the number of clinical episodes per lactation may be reduced by selection for lower somatic cell score, longer productive life, shallower udders, deeper udder cleft, or strongly attached fore udders.