Scaling Down Habitat Selection by Large River Fishes to Understand Patterns Relevant to Individuals

Modification and homogenization of habitat in large‐river ecosystems have led to the reduction of >50% of native fish species. Rehabilitating these complex ecosystems to recover fish populations requires an understanding of habitat availability and selection at multiple scales. Habitat selection by river fishes is typically assessed at the functional unit scale (100–10 000 m²). For example, in large, sand‐dominated rivers of the Central USA, alluvial islands are critical functional units for endangered sturgeon. Functional units, however, can be subdivided into mesohabitats (<100 m²), but very little is known about mesohabitat selection by large river fishes. We evaluated the mesohabitat selection of the federally endangered pallid sturgeon (Scaphirhynchus albus) and more abundant shovelnose sturgeon (Scaphirhynchus platorynchus) experimentally. We tested for selection among four common mesohabitat types that are nested within alluvial island complexes: (1) sand‐only substratum with no structure; (2) sand substratum with a sand dune structure; (3) sand substratum with simulated vegetation; and (4) a gravel‐only substratum. Sturgeon selected for the sand substratum, structureless mesohabitat, followed by the mesohabitat with a sand dune. Vegetated habitat retained less sturgeon than these two habitats but more than the gravel mesohabitat. Age‐0 pallid sturgeon and shovelnose sturgeon almost completely avoided gravel substrate, perhaps because of increased energetic costs associated with turbulent benthic flow. We posit that age‐0 sturgeon may prefer the sand and sand dune habitats over the vegetation and gravel habitats because flow may be more linear (or unidirectional) and predictable in these habitat types, whereas vegetation and gravel can create substantial benthic turbulence. Lastly, shovelnose sturgeon were on average denser in vegetated habitat than pallid sturgeon. Scaled to the population level, patterns revealed here could have implications for the macro‐distribution of both species. Restoration efforts may want to consider selection differences in the management of these two species and rehabilitation of riverine habitats. Copyright © 2015 John Wiley & Sons, Ltd.     

Abiotic Attributes Surrounding Alluvial Islands Generate Critical Fish Habitat

Identifying the appropriate scale at which habitat is biologically relevant to riverine fishes in large, sand‐dominated rivers is a challenge. Alluvial islands are important to several of these fishes throughout the central USA, but there is a paucity of information on island habitat features that restoration efforts should try to replicate. We determined the physical characteristics of two island complexes in the middle Mississippi River that facilitate the settlement and survival of age‐0 shovelnose sturgeon Scaphirhynchus platorynchus at relatively large (mean 39,000 m²) and small (mean 320 m²) scales. Depth (m), flow rate (m s^?1), substrate (sand, rock, silt) and vegetation were quantified at these two scales using hydroacoustic techniques (split‐beam sonar and acoustic Doppler current profiler). Abiotic attributes in the surrounding littoral zone of the island complexes were highly correlated but differed depending on location. At the coarse spatial scale, vegetation was positively related to shovelnose sturgeon abundance. At the fine spatial scale, age‐0 shovelnose sturgeon were restricted to flow rates < 0.89 m s^?1, with abundance peaking at about 0.40 m s^?1. However, heterogeneity in depth and flow was important, and sturgeon abundance peaked at intermediate variability in these two abiotic attributes. A computer‐generated model of the habitat surrounding islands suggests that these habitats are diverse and may provide flow refugia and foraging patches for shovelnose sturgeon. We submit the results presented here that can contribute to a hierarchical model for island restoration in large rivers. Copyright © 2014 John Wiley & Sons, Ltd.     

TURBULENT FLOWS AROUND SAND DUNES IN ALLUVIAL RIVERS

The sand dunes are typical bed forms of natural alluvial rivers.In this article,a vertical 2-D Reynolds stress model is established for the simulation of turbulent flows around sand dunes,and water-sand boundary conditions are set with particular attention.By numerical simulations,the following conclusions can be drawn.(1) The flow resistance in rivers with sand dunes could be divided into the sand-grain resistance and the sand dune resistance,and the sand-grain resistance coefficient mainly depends on Reyn...     

Variability in benthic respiration in three southeastern Australian lowland rivers

Benthic respiration is an important measure of decomposition processes occurring in streams, but our understanding of benthic respiration in lowland rivers is not well developed, particularly the factors that affect benthic respiration. In our study we measured benthic respiration at three sites in three contrasting lowland rivers in southeastern Australia. On most sampling occasions, rates of oxygen consumption in benthic chambers were linear. However, oxygen consumption rates fitted exponential decay curves during periods of highest microbial activity. Benthic community respiration ranged from 289 to 619 mg O₂ m² d^?1 in the Broken River, from 178 to 1438 mg O₂ m² d^?1 in the River Murray and from 127 to 2178 mg O₂ m² d^?1 in the Ovens River. Benthic respiration was closely correlated with water temperature, but not with sediment carbon content, sediment particle size, water column nutrients or water column dissolved organic carbon concentrations. Average carbon turnover periods were between 1.7 and 6 years for the three rivers, but were as low as 0.1 year immediately following an event that gave rise to mobilization of in‐stream dissolved organic carbon, sufficient to produce coloured water. The latter occurred in the Ovens River as a consequence of a rain event during a period of base‐flow. Flow regime as such did not have a major impact on benthic community respiration. Induced changes in respiration, by altering flows, would only occur by altering the quality and timing of carbon inputs, since temperature and carbon quality, rather than quantity, appear more important in determining lowland river benthic respiration. Copyright © 2005 John Wiley & Sons, Ltd.     

MACROINVERTEBRATE RESPONSE TO FLOW CHANGES IN A SUBALPINE STREAM: PREDICTIONS FROM TWO‐DIMENSIONAL HYDRODYNAMIC MODELS

Two‐dimensional hydrodynamic models are being used increasingly as alternatives to traditional one‐dimensional instream flow methodologies for assessing adequacy of flow and associated faunal habitat. Two‐dimensional modelling of habitat has focused primarily on fishes, but fish‐based assessments may not model benthic macroinvertebrate habitat effectively. We extend two‐dimensional techniques to a macroinvertebrate assemblage in a high‐elevation stream in the Sierra Nevada (Dana Fork of the Tuolumne River, Yosemite National Park, CA, USA). This stream frequently flows at less than 0.03 m³ s^?1 in late summer and is representative of a common water abstraction scenario: maximum water abstraction coinciding with seasonally low flows. We used two‐dimensional modelling to predict invertebrate responses to reduced flows that might result from increased abstraction. We collected site‐specific field data on the macroinvertebrate assemblage, bed topography and flow conditions and then coupled a two‐dimensional hydrodynamic model with macroinvertebrate indices to evaluate habitat across a range of low flows. Macroinvertebrate indices were calculated for the wetted area at each flow. A surrogate flow record based on an adjacent watershed was used to evaluate frequency and duration of low flow events. Using surrogate historical records, we estimated that flow should fall below 0.071 m³ s^?1 at least 1 day in 82 of 95 years and below 0.028 m³ s^?1 in 48 of 95 years. Invertebrate metric means indicated minor losses in response to modelled discharge reductions, but wetted area decreased substantially. Responses of invertebrates to water abstraction will likely be a function of changing habitat quantity rather than quality. Copyright © 2011 John Wiley & Sons, Ltd.     

Geomorphic response to river flow regulation: Case studies and time-scales

River regulation imposes primary changes on flow and sediment transfer, the principal factors governing the alluvial channel regime. In this study, the effect of flow regulation is isolated from sediment delivery. Peace River (Q? = 1080m³s^?1, increasing to 2110m³s^?1 downstream) was regulated in 1967 for hydropower. The gravel-bed reach immediately downstream from the dam has become stable. Gravel accumulates at major tributary junctions, so the river profile is becoming stepped. Further downstream, the river has a sand bed. It can still transport sand, so morphological changes along the channel include both aggradation and channel narrowing by lateral accretation. In the gravel-bed Kemano River (Q? = 150m³s^?1), the addition of water by diversion from another river caused degradation when additional bed material was entrained below the inflow point. However, the effect became evident only after many years, when a competent flood occurred. The short-term response was channel widening. The time-scale for the response depends on the size of the river and the nature and severity of regulation. In both rivers, significant adjustment will require centuries and will intimately involve the riparian forest.     

Modelling Temperature,Body Size,Prey Density,and Stream Gradient Impacts on Longitudinal Patterns of Potential Production of Drift‐Feeding Trout

In this study, we modelled idealized stream reaches using empirical hydrodynamic and bioenergetic parameters to predict how rainbow trout production depends on physical and biological variations across a downstream gradient, and we compared these downstream effects in a low and high‐gradient stream reach. We found that longitudinal production potential (i.e. net rate of energetic intake per 100 m of stream length) generally increased with increasing stream size when stream gradient was low. This was not the case, however, for high‐gradient streams, wherein maximum longitudinal production potential was associated with middle or low stream size (Q_MAD = 2.5 to 25 m³ s^?1). Areal production potential (net rate of energetic intake per m² of wetted stream bed) reached a maximum at low stream size (Q_MAD = 2.5 m³ s^?1) with both high and low gradients. We also showed that high stream temperature and low drift density could potentially cause adult rainbow trout to be excluded from stream reaches with high flow. The models presented here have a stronger mechanistic basis for predicting fish production across heterogeneous stream environments and provide more nuanced predictions in response to variation in environmental features than their physical habitat‐based predecessors. Copyright © 2016 John Wiley & Sons, Ltd.     

Long‐term irreversible changes in a lake ecosystem affected by the Indian Ocean Tsunami

This study focused on ecosystem responses to the environmental perturbations caused by the 2004 Indian Ocean Tsunami in a small lake that was a freshwater body in 1996, prior to the tsunami. The physicochemical and biological characteristics of Kokilamedu Lake (KKM) revealed drastic changes, compared with pretsunami conditions. Monthly average observations on water quality indicated the electrical conductivity of the water increased steeply to 17.41 mS cm^?1 in 2009, from the lowest pretsunami value of 1.83 mS cm^?1 (range of 1.83–5.25 mS cm^?1). Simultaneously, the nitrate + nitrite (NO₃ + NO₂) values increased significantly from 0.49 μmol L^?1 in 1996 to 74.47 μmol L^?1 in 2006. Silicate (SiO₄‐Si) exhibited a dramatic increase in concentration, from an average of 64.87 μmol L^?1 in the pretsunami period to 309.71 μmol L^?1 the post‐tsunami period (2009–2010). Inorganic phosphate had increased to a maximum of 9.59 μmol L^?1 from a pretsunami maximum of 1.09 μmol L^?1. The chlorophyll‐α concentrations did not respond to the increased nutrient stoichiometry of the lake. There was a decreased chlorophyll‐α concentration under post‐tsunami conditions. The recent infilling of the lake with sediment during the tsunami, associated with wind‐driven resuspension reduced the light penetration. There was a significant improvement in dissolved oxygen concentrations (2006–2010 average of 8.27 mg L^?1) in the lake, however, compared with the pretsunami values (1994–1995 average of 5.94 mg L^?1). The algal component is now dominated by blue‐green algae, while green algae had dominated in the pretsunami period. Pre‐ and post‐tsunami observations from a control site did not exhibit such dramatic shifts from the 1995 and 1996 conditions, whereas a shift was apparent in the case of KKM. Certain marine fishes have adapted to this altered ecosystem. These marine species encountered (Elops machnata, Cociella punctata, Sphyraena jello, Platycephalus indicus, Glossogobius giuris) might have been recruited during the intrusion of the tsunami waves.     

Anthropogenic and seasonal influences on the dynamics of selected heavy metals in Lake Naivasha, Kenya

Lake Naivasha is a freshwater lake in the Eastern Rift Valley of Kenya (0°45′S and 36°20′E). It has no surface outlet and is perceived to be under anthropogenic stress. Being situated at the basin of the rift valley, the lake acts as a sink for wastes from the town of Naivasha and the surrounding horticultural industry. Flux experiments were conducted to investigate the dynamics of heavy metals between the sediment–water interface in Lake Naivasha. In situ benthic flux experiments were conducted at two sites, one near the municipal wastewater inflow to the lake (site SS), and one at the papyrus field near the horticultural farms (site SH). Sediment samples from the exposed riparian land were collected during the dry season after the lake has receded, and the fluxes of selected metals were determined in the laboratory under simulated conditions. Aluminium in situ benthic flux at site SS averaged 7 mmol m^?2 h^?1, and was correlated positively with pH (Pearson correlation coefficient (r) = 0.89). While the in situ benthic flux of aluminium at site SH averaged 1 mmol m^?2 h^?1. In situ benthic fluxes of copper and manganese were predominantly positive at site SS, but not at site SH. The papyrus field at site SH played an important role in buffering of the lake in regard to the selected metals investigated in this study. Redox‐sensitive metals were precipitated in the benthic flux experiment for this site.     

A Comparison of Metabolic Rates in Off‐Channel Habitats of the Middle Mississippi River

Autochthonous material has been found to be an important base in large river food webs. However, a spatial understanding of primary production in large rivers is lacking. We modeled primary productivity and community respiration (CR) during a low water period in two types of off‐channel habitat present in the Middle Mississippi River, side channels and wing dike fields. Wing dike fields are constantly connected to the main channel and are well mixed along most of their length, while side channels are typically connected only at the top and mouth. Gross primary production (GPP) in wing dike fields ranged from 0.0 to 8.9 g O₂ m^?2 D^?1 and in side channels GPP ranged from 0.4 to 33.5 g O₂ m^?2 D^?1. Both habitat types experienced periods of positive net ecosystem production (NEP) especially in the late summer and early fall. Correlations between metabolic rates and ecosystem characteristics differed between habitat types. Discharge was negatively correlated to NEP in wing dike fields but was not associated with metabolic rates in side channels. Light was positively correlated with GPP and CR at both site types and with NEP in side channels. These areas are protected from high velocity and likely experience greater light penetration, allowing more photosynthesis to take place especially during low water periods. This study demonstrates the potential for high productivity in off‐channel habitats that are permanently connected to the main channel. Copyright © 2016 John Wiley & Sons, Ltd.