Evaluating upstream passage and timing of approach by adult bigheaded carps at a gated dam on the Illinois River

Dams are a conservation threat because they function as barriers to native fish movement; however, they may prevent the spread of invasive species. Invasive bigheaded carps (Hypophthalmichthys spp.) threaten the Great Lakes ecosystem and are advancing towards Lake Michigan via the Illinois River. Navigation dams on the Illinois River may deter bigheaded carps' upstream movement. We investigated the permeability of the Starved Rock Lock and Dam (SRLD), the most downstream gated Illinois River dam, to bigheaded carps' migration by examining the timing of individuals approaching and passing through SRLD in relation to gate openness, tailwater elevation, and water temperature. Using acoustic telemetry of (N = ~104 per year) tagged fish, 13 upstream passages of bigheaded carps occurred through SRLD between 2013 and 2016. Eleven passages occurred through the dam gates and 2 through the lock chamber, indicating deterrents (e.g., CO₂) placed in SRLD lock chamber may only limit passage of a small proportion of all fish passing through the lock‐and‐dam structure. Passages were documented only in 2013 and 2015. Most of the dam gate passages occurred during high water when gates were completely out of the water. Timing of bigheaded carps approaching SRLD was positively correlated with rising water temperature and high tailwater elevation, and all fish approached during late March through mid‐September. Movement through dams is rare; modifying gate operations to reduce gate openness during late spring and summer could further reduce the permeability of gated dams such as SRLD to bigheaded carps, slowing their upstream advance.     

Acoustically derived habitat associations of sympatric invasive bigheaded carps in a large river ecosystem

Bigheaded carp (Hypophthalmichthys spp.) occur throughout much of the Mississippi Basin, USA. Efforts to control the spread of these invasive species require information on their spatial ecology, though sampling is hindered by their broad extent, habitat tolerances, and species‐specific behaviour. Mobile hydroacoustics was used to quantify habitat and depth use of bigheaded carp over four years in the heavily invaded Lower Illinois River, a major Mississippi tributary and potential dispersal pathway to the Great Lakes. Horizontally oriented transducers (combined with capture gear for species designation) enabled sampling of the main habitat features in this large flood plain river. Silver carp (Hypophthalmichthys molitrix) were dominant over bighead carp (Hypophthalmichthys nobilis) at all but one site, although habitat use was similar for both species. Densities were highest in lotic backwaters, followed by lentic backwaters and nearshore main channel, with lowest densities in the mid main channel. Bigheaded carp size and species composition were independent of habitat type. Depth associations were similar for both species, with average occurrence at 2.5–3.5 m in the main channel and 1–2 m in backwaters. However, depth relative to the river bed was largely similar across habitat types. Bigheaded carp density and depth use in the main channel were linked non‐linearly to river discharge and water temperature, respectively; densities were reduced during high discharge, whereas depth use became shallower at higher temperatures. Density–hydrology trends were less apparent in backwaters. These findings highlight critical aspects of bigheaded carp spatial ecology that will facilitate effective management in invaded and at‐risk ecosystems.     

Inter‐habitat variation in the benthos of the Upper Missouri River (North Dakota,USA): implications for Great River bioassessment

We examined inter‐habitat variation in benthic macroinvertebrate assemblages in the 180‐km Garrison Reach of the Upper Missouri River, North Dakota (USA) in 2001–2003. The Garrison Reach is unchannelized with a mostly rural setting. Flows are regulated by Garrison Dam. We sampled benthos from three habitats defined a priori: channel, shoreline, and backwater. Benthic assemblages were different in each habitat. Average Bray‐Curtis dissimilarity in assemblage composition ranged from 89% for backwater versus channel habitat to 70% for backwater versus shoreline habitat. There were distinct intra‐habitat groups within a priori habitats: channel assemblages included moving‐sand assemblages and other‐substrate channel assemblages; backwater assemblages included connected (to the river channel) and unconnected backwater assemblages; shorelines assemblages varied between natural (unprotected) and riprap (rock revetment) shorelines. Abundance and taxa richness were lowest and spatial variability highest for moving‐sand channel assemblages. Abundance was highest in backwaters. Taxa richness in backwaters and along channel shorelines were similar. Assemblages in all three habitats were dominated by Nematoda, Oligochaeta and Chironomidae. Taxa in these groups comprised at least 80% of mean abundance in all three habitats. Taxa that discriminated among habitats included the psammophilic chironomid Chernovskiia for moving‐sand channel substrates versus all other habitats; Hydroptila (Trichoptera) for riprap vs natural shorelines, Aulodrilus (Oligochaeta) for connected versus unconnected backwaters; and Nematoda for backwater versus channel and shoreline versus channel. Based on overlap patterns in benthic assemblages among habitats, we concluded that sampling main channel shorelines should also capture much of the natural and stressor‐induced variation in connected backwater and channel habitat exclusive of moving‐sand channel habitat. Published in 2006 by John Wiley & Sons, Ltd.     

Status of the major aquaculture carps of China in the Laurentian Great Lakes Basin

There is concern of economic and environmental damage occuring if any of the four major aquacultured carp species of China, black carp Mylopharyngodon piceus, bighead carp Hypophthalmichthys nobilis, silver carp H. molitrix, or grass carp Ctenopharyngodon idella, were to establish in the Laurentian Great Lakes. All four are reproducing in the Mississippi River Basin. We review the status of these fishes in relation to the Great Lakes and their proximity to pathways into the Great Lakes, based on captures and collections of eggs and larvae. No black carp have been captured in the Great Lakes Basin. One silver carp and one bighead carp were captured within the Chicago Area Waterway System, on the Great Lakes side of electric barriers designed to keep carp from entering the Great Lakes from the greater Mississippi River Basin. Three bighead carp were captured in Lake Erie, none later than the year 2000. By December 2019, at least 650 grass carps had been captured in the Great Lakes Basin, most in western Lake Erie, but none in Lake Superior. Grass carp reproduction has been documented in the Sandusky and Maumee rivers in Ohio, tributaries of Lake Erie. We also discuss environmental DNA (eDNA) results as an early detection and monitoring tool for bighead and silver carps. Detection of eDNA does not necessarily indicate presence of live fish, but bigheaded carp eDNA has been detected on the Great Lakes side of the barriers and in a small proportion of samples from the western basin of Lake Erie.     

Thermal and hydrologic suitability of Lake Erie and its major tributaries for spawning of Asian carps

Bighead carp Hypophthalmichthys nobilis, silver carp H. molitrix, and grass carp Ctenopharyngodon idella (hereafter Asian carps) have expanded throughout the Mississippi River basin and threaten to invade Lakes Michigan and Erie. Adult bighead carp and grass carp have been captured in Lake Erie, but self-sustaining populations probably do not exist. We examined thermal conditions within Lake Erie to determine if Asian carps would mature, and to estimate time of year when fish would reach spawning condition. We also examined whether thermal and hydrologic conditions in the largest tributaries to western and central Lake Erie were suitable for spawning of Asian carps. We used length of undammed river, predicted summer temperatures, and predicted water velocity during flood events to determine whether sufficient lengths of river are available for spawning of Asian carps. Most rivers we examined have at least 100 km of passable river and summer temperatures suitable (> 21 C) for rapid incubation of eggs of Asian carps. Predicted water velocity and temperature were sufficient to ensure that incubating eggs, which drift in the water column, would hatch before reaching Lake Erie for most flood events in most rivers if spawned far enough upstream. The Maumee, Sandusky, and Grand Rivers were predicted to be the most likely to support spawning of Asian carps. The Black, Huron, Portage, and Vermilion Rivers were predicted to be less suitable. The weight of the evidence suggests that the largest western and central Lake Erie tributaries are thermally and hydrologically suitable to support spawning of Asian carps.     

A physical habitat model for predicting the effects of flow fluctuations in nursery habitats of the endangered Colorado pikeminnow (Ptychocheilus lucius)

Larval and juvenile Colorado pikeminnow (Ptychocheilus lucius) use shallow, low‐velocity, channel‐margin areas (backwaters) as nursery habitats. It is hypothesized that within‐day flow fluctuations caused by hydropower operations can directly affect the suitability of such habitats by altering water temperature and habitat geometry. Despite the importance of backwaters to juvenile fishes, there is a lack of established approaches for modelling how river management affects these habitats. Here, we describe a physical habitat model that predicts the effects of mainstem flow variation on backwater temperature, geometry and invertebrate availability. We specifically modelled these effects on habitat in a portion of the Green River in Utah below Flaming Gorge Dam. The overall model combines a cell‐based model of backwater geometry, a pond‐based temperature model and a model of invertebrate production. Results from a series of simulations suggest that the most important biological effects of within‐day flow fluctuations are likely to be those associated with the availability of invertebrate prey including (1) minimum wetted area, (2) the proportion of the backwater's volume exchanged with the mainstem, and, to a lesser degree, (3) backwater temperature. Taken together, such effects could have important implications for the growth and survival of juvenile fish when flow fluctuations are sufficiently large. Copyright © 2006 John Wiley & Sons, Ltd.     

Species‐ and habitat‐specific otolith chemistry patterns inform riverine fisheries management

Geology and hydrology are drivers of water chemistry and thus important considerations for fish otolith chemistry research. However, other factors such as species and habitat identity may have predictive ability, enabling selection of appropriate elemental signatures prior to costly, perhaps unnecessary water/age‐0 fish sampling. The goal of this study was to develop a predictive methodology for using species and habitat identity to design efficient otolith chemistry studies. Duplicate water samples and age‐0 fish were collected from 61 sites in 4 Missouri River reservoirs for walleye Sander vitreus and one impoundment (Lake Sharpe, South Dakota) for other fishes (bluegill Lepomis macrochirus, black crappie Pomoxis nigromaculatus, gizzard shad Dorosoma cepedianum, largemouth bass Micropterus salmoides, smallmouth bass M. dolomieu, white bass Morone chrysops, white crappie P. annularis, and yellow perch Perca flavescens). Water chemistry (barium:calcium [Ba:Ca], strontium:calcium [Sr:Ca]) was temporally stable, spatially variable, and highly correlated with otolith chemistry for all species except yellow perch. Classification accuracies based on bivariate Ba:Ca and Sr:Ca signatures were high (84% across species) yet varied between floodplain and main‐channel habitats in a species‐specific manner. Thus, to maximize the reliability of otolith chemistry, researchers can use species classifications presented herein to inform habitat selection (e.g., study reservoir‐oriented species such as white bass in main‐channel environments) and habitat‐based classifications to inform species selection (e.g., focus floodplain studies on littoral species such as largemouth bass). Overall, species and habitat identity are important considerations for efficient, effective otolith chemistry studies that inform and advance fisheries and aquatic resource management.     

SPATIAL AND TEMPORAL WATER QUALITY VARIABILITY IN AQUATIC HABITATS OF A CULTIVATED FLOODPLAIN

The floodplains of lowland rivers contain diverse aquatic habitats that provide valuable ecosystem services but are perturbed when intensively cultivated. Hydrologic, water chemistry and biological (fish) conditions in five aquatic habitats along the Coldwater River, Mississippi, were measured for more than 4 years: the river, two severed meanders that functioned as backwaters, a managed wetland and an ephemeral channel draining cultivated fields. Off‐channel habitats were connected to downstream regions 0.10% to 32% of the dry season and 24% to 67% of the wet season. The median temperatures for the five monitored sites ranged from 18°C to 23°C, the median total solids concentration for all sites was 135 mg L^?1, the median total phosphorus was 0.29 mg L^?1 and the median total nitrogen was 1.56 mg L^?1. Chemical and physical water quality displayed strong seasonal differences between the wet winter/spring and the dry summer/fall periods so that temporal variation consisted of gradual seasonal trends superimposed on strong diurnal variations. All off‐channel habitats exhibited periods of hypoxia and temperatures >30°C during the dry season. Between‐site gradients of water and habitat quality were strongly coupled to water depth and runoff loading. The rehabilitation of one backwater by increasing water depth and diverting agricultural runoff was associated with improved water quality and fish species richness relative to an adjacent untreated backwater. The diversion of polluted runoff and the use of water control structures to maintain greater water depth were observed to be effective management tools, but the former reduces the water supply to habitats that tend to dry up and the latter reduces connectivity. Published in 2011 by John Wiley & Sons, Ltd.     

Developing habitat associations for fishes in Lake Winnipeg by linking large scale bathymetric and substrate data with fish telemetry detections

Understanding relationships between freshwater fishes and habitat is critical for effective fisheries and habitat management. Habitat suitability indices (HSI) are commonly used to describe fish–habitat associations in rivers and other freshwater ecosystems. When applied to large lakes however, standard sampling procedures are inadequate because of larger sampling areas and an increased risk of fish collection bias through one-time observations. Here, we use lake bathymetry, substrate, and multiple fish telemetry detections collected from a systematically deployed receiver grid to develop HSI for four fish species (lake sturgeon, freshwater drum, common carp, and walleye) in Lake Winnipeg. Seasonal variations in habitat use based on water depth and substrate were observed in three of four species. Lake sturgeon remained in shallow locations with predominantly gravel substrate near the mouth of the Winnipeg River regardless of season. Freshwater drum persisted over fine substrate in both summer and winter but had a broader depth range in the summer compared to winter. Common carp shifted from mid-range depths and silt substrate in the summer to shallow depths and gravel substrate in the winter. Walleye showed an unchanging association to fine substrate but expanded from primarily mid-range depths in the summer to include shallower depths in the winter. These findings show how multiple telemetry detections per fish can be combined with hydroacoustic data to provide informative habitat associations for fishes in a large lacustrine ecosystem.     

Do Management Actions to Restore Rare Habitat Benefit Native Fish Conservation? Distribution of Juvenile Native Fish Among Shoreline Habitats of the Colorado River

Many management actions in aquatic ecosystems are directed at restoring or improving specific habitats to benefit fish populations. In the Grand Canyon reach of the Colorado River, experimental flow operations as part of the Glen Canyon Dam Adaptive Management Program have been designed to restore sandbars and associated backwater habitats. Backwaters can have warmer water temperatures than other habitats, and native fish, including the federally endangered humpback chub Gila cypha, are frequently observed in backwaters, leading to a common perception that this habitat is critical for juvenile native fish conservation. However, it is unknown how fish densities in backwaters compare with that in other habitats or what proportion of juvenile fish populations reside in backwaters. Here, we develop and fit multi‐species hierarchical models to estimate habitat‐specific abundances and densities of juvenile humpback chub, bluehead sucker Catostomus discobolus, flannelmouth sucker Catostomus latipinnis and speckled dace Rhinichthys osculus in a portion of the Colorado River. Densities of all four native fish were greatest in backwater habitats in 2009 and 2010. However, backwaters are rare and ephemeral habitats, so they contain only a small portion of the overall population. For example, the total abundance of juvenile humpback chub in this study was much higher in talus than in backwater habitats. Moreover, when we extrapolated relative densities based on estimates of backwater prevalence directly after a controlled flood, the majority of juvenile humpback chub were still found outside of backwaters. This suggests that the role of controlled floods in influencing native fish population trends may be limited in this section of the Colorado River. Copyright © 2014 John Wiley & Sons, Ltd.