Genetic origins and diversity of lake sturgeon in the St. Louis River Estuary

Lake sturgeon Acipenser fulvescens were extirpated from the St. Louis River Estuary (SLRE) by the early 1900’s due to overfishing and habitat degradation. A restoration stocking program began in 1983, and continued almost annually until 2000. Lake sturgeon stocked into the SLRE were primarily obtained from the Wolf River (Lake Winnebago) genetic stock (n = 861,000) but some sturgeon were obtained from the Sturgeon River (Lake Superior) genetic stock (n = 61,380). Recently, spawning and natural recruitment has been documented near the Fond du Lac Dam, the upstream limit for lake sturgeon migrating from Lake Superior. However, the genetic origin of lake sturgeon spawning in the SLRE was unknown. Our objectives were to determine (1) the genetic origins and (2) genetic diversity of lake sturgeon spawning in the SLRE. Using both GENECLASS2 and ONCOR, a majority (79–81%) of lake sturgeon captured in the SLRE during spawning (2016–2018) assigned to the Wolf River genetic stock (Lake Winnebago) with greater than 80% probability using established microsatellites and a standardized genetic baseline. Other genetic stocks present (≥1%) included the Pic and Goulais rivers and possibly the Black Sturgeon River (identified using GENECLASS2, but not ONCOR); no fish assigned to the Sturgeon River using either method. Genetic diversity metrics showed that the SLRE lake sturgeon population was similar to other Lake Superior lake sturgeon populations. Overall, the SLRE Sturgeon population appears headed towards recovery. Adaptive management practices currently being employed should be continued to help guide further recovery of this population.     

Population Characteristics and Movements of Lake Sturgeon in the Sturgeon River and Lake Superior

A 2.6-km reach of the Sturgeon River, containing two sets of rapids, is an important spawning site to a native population of lake sturgeon, Acipenser fulvescens, which ranges widely into southern Lake Superior. Similar spawning areas in other Great Lake tributaries may also be important to the protection and rehabilitation of lake sturgeon throughout this region. Information on range and habitat needs of this species, which is considered “threatened” in the State of Michigan, was obtained from the Sturgeon River spawning population from 1987 to 1995. Radio-tracking was employed to determine movements and habitat use by post-spawning lake sturgeon. Telemetry data from 25 fish were supplemented with data obtained through identification tag returns. During the study 925 lake sturgeon were handled; 86 returned to spawn 1 time and 12 returned 2 times. Spawning intervals for male lake sturgeon were commonly 2, 3, or 4 years; yearly spawning by males was never observed. Females returned to spawn after 3 to 7 years. From 1991 to 1995 the male:female sex ratio at the spawning site was 1.25 to 2.7. In 1990 13 of 18 adults fitted with transmitters moved out of the river within 9 days. Upon reaching Portage Lake nine individuals spent time in shallow (maximum depth, 6 m) Pike Bay. After 3 to 53 days (mean, 22) tagged fish moved into the deeper water of Portage Lake (maximum depth, 17 m) and ranged more widely. Three fish were located in Keweenaw Bay, Lake Superior by late August. Identification tag returns reveal that lake sturgeon traveled 70 to 280 km from the spawning site throughout southern Lake Superior.     

Multi-run migratory behavior of adult male lake sturgeon in a short river

Lake sturgeon (Acipenser fulvescens) can migrate long distances to spawn, but many populations currently spawn in systems where the length of accessible riverine migratory habitat has been greatly reduced by dam construction. With the increased prevalence of shortened rivers, focusing on migratory dynamics in short rivers (<30 km) is beneficial to understanding the migratory needs of lake sturgeon populations. Here we document male lake sturgeon movements during the spawning period in the Winooski River, Vermont, USA; a river with only 17 km to the first natural upstream barrier. Male lake sturgeon were acoustically tagged (n = 25, 1215–1470 mm TL) and tracked using five to nine stationary receivers from 2017 to 2019. River discharge, temperature, the lagged effect of temperature (3-day), and time of day were significant factors describing upstream movements of tagged fish. Migrating male lake sturgeon (n = 10 in 2017, n = 18 in 2018, and n = 17 in 2019) displayed general movement patterns during the spawning period that included a single run upstream to the spawning site (60%), upstream and downstream movements throughout the river during the season (20%), or multiple runs made up the entire length of the spawning tributary to the spawning site (20%). No multi-run males were observed during 2018 when discharge was less flashy (i.e., fewer steep increases and declines in discharge) than in 2017 and 2019. These results suggest that the prevalence of multi-run spawning behavior of male lake sturgeon is related to flow conditions.     

Seasonal use of two unregulated Lake Superior tributaries by lake sturgeon

Lake sturgeon movement in two adjacent unregulated Lake Superior tributaries, the Pic and White rivers, was assessed over several years to determine seasonal use, identify potential contributing factors for entry or exit migrations, and evaluate whether sturgeon using these tributaries constituted one or two populations. A total of 95 lake sturgeon implanted with radio transmitters were tracked using multiple stationary receivers augmented with boat-based manual surveillance during peak movement times. Both rivers were used by lake sturgeon during the open water (“ice off”) season. In general, spawning sturgeon moved to the first insuperable barrier (i.e., natural rapids) during the spawning season, and then moved downstream to deeper pools in mid- to late summer. Non-spawning sturgeon moved into the river concurrently but remained in lower portions of the river. Lake sturgeon emigrated from the Pic River and resided in Lake Superior during the winter season whereas a small portion of radio transmittered sturgeon, originally sampled in the Pic River, overwintered in the White River. River discharge and the interaction between discharge and water temperature were correlated with upstream movement, and river discharge was also correlated with outmigration. No genetic structuring was apparent between Sturgeon within the two rivers, consistent with telemetry data showing radio-tagged fish moving readily between the rivers. This study provided pertinent seasonal use information of unregulated Great Lake tributaries and may contribute to planning processes for future hydroelectric developments to minimize disruptions to lake Sturgeon populations.     

Historical genetic connectivity of lake sturgeon in a dammed Great Lakes tributary

Lake sturgeon (Acipenser fulvescens) populations are the focus of rehabilitation efforts across the Great Lakes. Although historical fisheries were a major cause of population collapses, habitat fragmentation and/or loss and reduced access to spawning and juvenile habitat impose contemporary challenges for population recovery. The loss of connectivity between habitat types required by different life stages may particularly limit recruitment rates, inhibiting population increase towards recovery targets. We used microsatellite DNA genotyping to assess population structure, diversity, and historical connectivity of lake sturgeon in the Black Sturgeon River watershed, a major tributary of Black Bay, Lake Superior with both historical and contemporary dams. Genotype data from lake sturgeon sampled above and below an existing major barrier, as well as from lakes in the upper watershed, showed evidence of historical connectivity throughout the watershed. Despite the existing barrier fragmenting the river and preventing upstream migration, lake sturgeon from the Black Sturgeon watershed showed clear membership to a single ancestral gene pool. Estimates of genetic effective population size (N_e) for the above- and below-barrier population segments were reduced compared to the larger (watershed level) gene pool. Although the longevity of lake sturgeon has largely enabled the retention of historical genetic diversity for the population in the watershed, the reduced productive capacity of this significant tributary may have implications for recovery rates for the regional Lake Superior metapopulation. Restoring connectivity among habitats would benefit the long-term conservation and management of this species throughout this river system, and potentially the regional metapopulation.     

Lake sturgeon (Acipenser fulvescens) spawn in the St. Marys River Rapids,Michigan

The St. Marys River connects Lake Superior to Lake Huron, comprising the international border between Michigan, United States, and Ontario, Canada. This Great Lakes connecting channel naturally encompasses various habitats including lakes, wetlands, islands, tributaries, side channels, and main channels. The St. Marys River Rapids are shallow rock areas with high flow velocities (>1 m/s) in the upper river adjacent to the navigation locks and electric power generating stations, while the Little Rapids are shallow, recently restored rocky areas with lower velocities located about 7 km downstream. The St. Marys River Rapids provide important spawning habitat for several native and introduced fishes, but spawning by lake sturgeon (Acipenser fulvescens) was not previously documented. We sampled for lake sturgeon eggs and larvae in both locations during June and July 2018–2019 using weekly benthic egg mat lifts and overnight D-frame larval fish drift nets. Viable lake sturgeon eggs (11 in 2018, 45 in 2019) were collected in the tailrace of a hydroelectric power facility adjacent to the St. Marys River Rapids. Larval lake sturgeon (21 in 2018, 1 in 2019) were collected in the same area as the eggs. Neither lake sturgeon eggs nor larvae were collected at Little Rapids in either year. Our results are the first documentation of successful lake sturgeon spawning and larval drift in the upper St. Marys River. While our observations showed spawning in a human-made tailrace area, the fate of larvae produced here is unknown and warrants further research.     

Assessing habitat for lake sturgeon (Acipenser fulvescens) reintroduction to the Maumee River,Ohio using habitat suitability index models

Lake sturgeon (Acipenser fulvescens) were a candidate for reintroduction in the Maumee River, Ohio, where they were historically abundant, but are now functionally extirpated. Our objective was to determine if current habitat quality and quantity could support reintroduction efforts. We developed a spatially explicit habitat suitability index model for two lake sturgeon life stages: spawning adult and age-0 fish. To estimate habitat quality, substrate, water depth, and water velocity were assessed and integrated into suitability index values to delineate good, moderate, and poor areas for each life stage. Each habitat characteristic was mapped and combined to provide an overall assessment of habitat suitability, quantity, and location. Model results indicated 208 ha (10.2% of all habitat) of good adult spawning habitat (e.g., coarse substrates, depths between 0.3 and 8 m, and velocity between 0.5 and 1 m/s) and 529 ha (28.2% of all habitat) of good age-0 habitat (e.g., fine substrates, depths between 0.2 and 6 m, and velocity between 0.1 and 0.7 m/s). Good age-0 habitat was located mostly downstream of good spawning habitat, which will provide nursery areas for age-0 fish after hatch. Our models suggested habitat is not limiting for lake sturgeon and efforts to reintroduce this species into the Maumee River, and for the first time in the Lake Erie basin, were supported. The results of this work supported reintroduction efforts that began in 2018.     

A review of lake sturgeon Acipenser fulvescens spawning sites in the Lower St. Lawrence and Ottawa river systems

Knowledge concerning critical habitats such as spawning sites is crucial to the preservation of vulnerable fish species like sturgeons. For lake sturgeon Acipenser fulvescens populations in the Lower St. Lawrence and Ottawa river systems, knowledge about spawning sites has been documented primarily in the grey literature, unpublished reports, or notes, with very little published in peer-reviewed literature. Here, we reviewed over 100 reports, articles, and unpublished observations in the Lower St. Lawrence and Ottawa river systems to synthesize available information concerning the location of lake sturgeon spawning sites, the level of spawning activity, and the methodologies used for assessments. In this review, 38 lake sturgeon spawning sites were identified. Of these sites, 11 were enhanced or artificially created for lake sturgeon. In the Lower St. Lawrence River, 68% of known spawning sites were located downstream from a dam compared to 47% in the Ottawa River. The use of the two artificially created spawning sites in the Lower St. Lawrence River has not yet been confirmed, while one site established in the Ottawa River has had confirmed spawning activity, although the spawning run size is unknown. In contrast, spawning has been confirmed for the seven natural spawning sites that have been artificially expanded in these systems, and two of these sites have large spawning runs. Information revealed by this review suggests that lake sturgeon populations in these large river systems rely on multiple spawning sites and that expanding natural spawning grounds may be more effective than creating new ones.     

Delivery of nutrients and seston from the Muskegon River Watershed to near shore Lake Michigan

Drowned river mouth lakes are major features of coastal Great Lakes habitats and may influence nutrient and organic matter contributions from watersheds to near shore coastal zones. In May through October 2003, we measured loads of nutrients, surficial sediment, and seston to track the delivery of riverine-derived materials from the lower Muskegon River Watershed (MRW) into the near shore area of southeast Lake Michigan. Nutrient flux data indicated that seasonal loads of 1800 metric tons (MT) of particulate organic carbon, 3400 MT of dissolved organic carbon, and 24 MT of total phosphorus were discharged from the lower Muskegon River, with approximately 33% of TP load and 53% of the POC load intercepted within the drowned river mouth terminus, Muskegon Lake. Carbon: phosphorus molar ratios of seston in Muskegon River (C:P = 187) and Muskegon Lake (C:P = 176) were lower than in Lake Michigan (C:P = 334), indicating phosphorus limitation of phytoplankton in near shore Lake Michigan. Isotopic signatures of seston collected in Muskegon Lake were depleted in δ¹³C (− 30.8 ± 1.6‰) relative to the isotope signatures of seston from Lake Michigan (− 26.2 ± 1.3‰) or the mouth of the Muskegon River (− 28.1 ± 0.5‰), likely due to the presence of biogenic methane in Muskegon Lake. Seston δ¹⁵N increased on a strong east-to-west gradient within Muskegon Lake, indicating significant microbial processing of nutrients. The extent of nutrient uptake in Muskegon Lake altered the chemical and isotopic characterization of seston flowing into Lake Michigan from Muskegon River.     

New insights into larval lake sturgeon daytime drift dynamics

Drifting post yolk-sac (PYS) lake sturgeon Acipenser fulvescens larvae were believed to seek refuge in substrate during daytime although there were no data to support this theory. There is growing scientific literature on important habitat, such as for adults and where eggs are spawned and hatch, however a gap remains in understanding duration of drift for PYS larvae, especially during daytime. This study was undertaken to find drifting PYS lake sturgeon larvae during the day in the Sturgeon River, Michigan, a clear yet tannin-rich river with a well-studied self-sustaining population. River substrates were mapped, and light, velocity, and depth data gathered to describe ‘believed’ refuge for larvae during daylight. From 2013 through 2016 nighttime drift samples (n = 463) for PYS lake sturgeon larvae were complemented with 143 daytime kick net samples and 43 daytime drift sets. No drifting larvae were collected in the daytime kick nets covering a variety of substrate types while over 1,600 PYS larvae were captured in drift nets at night, and 34 were captured in daytime drift sets. These 34 PYS larvae were in the previously unsampled thalweg in ~5% of surface light and at velocities of 0.24 to 0.57 m/s. Data suggest that drifting PYS lake sturgeon larvae do not stop and seek refuge during daylight but rather drift quickly and continuously downstream until suitable habitat is encountered. Measures of light, depth, velocity and thalweg presence combined with LiDar and Sonar mapping will be critical to understanding river suitability and restoration success for this species.     

Contaminant concentrations in bald eagles nesting on Lake Superior,the upper Mississippi River,and the St. Croix River

We measured concentrations of DDE, total PCBs, and mercury in bald eagle (Haliaeetus leucocephalus) nestlings at three locations in the upper Midwest: Lake Superior, the upper Mississippi River, and the St. Croix River, 2006–2008. We also analyzed trends in concentrations of these contaminants for eagles on the southern shore of Lake Superior, from 1989 to 2008, using the current and previously published data. Concentrations of DDE in nestling blood plasma samples were greatest on Lake Superior (geometric mean: 16.2 μg/kg, n = 29), whereas concentrations of total PCBs were highest in Mississippi River samples (88.6 μg/kg, n = 51). Mercury concentrations were highest along the upper St. Croix River (6.81 μg/g wet weight in feathers, n = 19). For Lake Superior, DDE concentrations declined significantly in nestling blood plasma samples from 1989 to 2008, an average of 3.0% annually. Similarly, total PCBs in Lake Superior eaglets decreased 4.0% annually from 1989 to 2008, and mercury concentrations in nestling feathers from Lake Superior nests also decreased significantly from 1991 to 2008, 2.4% per year. With the possible exception of mercury on the upper St. Croix River, mean concentrations in 2006–2008 of all three compounds were below levels associated with significant impairment of reproduction for all sites, and reproductive rates at all three sites averaged > 1.2 young per occupied territory, which is greater than the rate indicative of a healthy population.     

Acoustic estimates of abundance and distribution of spawning lake trout on Sheboygan Reef in Lake Michigan

Efforts to restore self-sustaining lake trout (Salvelinus namaycush) populations in the Laurentian Great Lakes have had widespread success in Lake Superior; but in other Great Lakes, populations of lake trout are maintained by stocking. Recruitment bottlenecks may be present at a number of stages of the reproduction process. To study eggs and fry, it is necessary to identify spawning locations, which is difficult in deep water. Acoustic sampling can be used to rapidly locate aggregations of fish (like spawning lake trout), describe their distribution, and estimate their abundance. To assess these capabilities for application to lake trout, we conducted an acoustic survey covering 22 km² at Sheboygan Reef, a deep reef ( < 40 m summit) in southern Lake Michigan during fall 2005. Data collected with remotely operated vehicles (ROV) confirmed that fish were large lake trout, that lake trout were 1–2 m above bottom, and that spawning took place over specific habitat. Lake trout density exhibited a high degree of spatial structure (autocorrelation) up to a range of ∼ 190 m, and highest lake trout and egg densities occurred over rough substrates (rubble and cobble) at the shallowest depths sampled (36–42 m). Mean lake trout density in the area surveyed (∼ 2190 ha) was 5.8 fish/ha and the area surveyed contained an estimated 9500–16,000 large lake trout. Spatial aggregation in lake trout densities, similarity of depths and substrates at which high lake trout and egg densities occurred, and relatively low uncertainty in the lake trout density estimate indicate that acoustic sampling can be a useful complement to other sampling tools used in lake trout restoration research.     

Philopatry and vagrancy of white bass (Morone chrysops) spawning in the Sandusky River: Evidence of metapopulation structure in western Lake Erie using otolith chemistry

Although natal homing and philopatry are well studied in anadromous salmon, few studies have investigated philopatric behavior in large, freshwater systems. In western Lake Erie, white bass (Morone chrysops) undergo seasonal spawning migrations from the open-water regions of Lake Erie to nearshore reef complexes and tributaries. The three primary spawning locations in Lake Erie are within 80 km of each other and are not separated by physical barriers. We used naturally occurring differences in otolith strontium concentrations among major spawning locations to address philopatry and vagrancy to the Sandusky River spawning location. Most individuals spawning in the Sandusky River were natal to this river (73%). No statistically significant differences in the extent of homing by sex or age of spawning were found, although a potential pattern of decreased homing with increased age of fish was observed. Given the proportion of vagrant individuals we found spawning in the Sandusky River (27%), it is unlikely that Lake Erie white bass spawning populations are genetically distinct. Furthermore, the white bass population in Lake Erie appears to be structured as a metapopulation, with non-philopatric individuals serving as a link between spawning populations.     

Spatial genetic structure and recruitment dynamics of burbot (Lota lota) in Eastern Lake Michigan and Michigan tributaries

Burbot (Lota lota) are the only freshwater member of the Cod like (Lotidae) family that have a circumpolar distribution and occupy the widest geographic distribution of all Laurentian Great Lakes fish species. Information regarding burbot spatial genetic structure and recruitment dynamics is critical for the development of effective management strategies. Although burbot are a species of conservation concern throughout their range, little demographic or behavioral information exists. We estimated levels of genetic diversity within, and the degree of spatial population structure between samples collected from Lake Michigan and tributaries of the Manistee River, MI. Measures of genetic diversity across 10 microsatellite loci were moderately high. Disparities between adult groups sampled in Lake Michigan and the Manistee River were notable for observed heterozygosity (0.662 vs 0.488) and allelic richness (11.7 vs 6.6). Significant levels of inter-population variance in microsatellite allele frequencies (F_ST 0.154 to 0.208) were detected between Lake Michigan and the Manistee River samples. Results indicate reproductive isolation between what plausibly may be riverine and lacustrine spawning life history types. Pedigree analyses for three cohorts sampled in the Manistee River revealed that a sizeable number of adults contributed reproductively to multiple cohorts, indicating spawning philopatry. While data were collected from restricted areas in lacustrine and river habitats, analyses revealing microgeographic genetic structuring, potentially attributed to life history polymorphisms, have significant implications for burbot management in the Great Lakes.     

Spatial and temporal variations of persistent organic pollutants impacted by episodic sediment resuspension in southern Lake Michigan

The impacts of large-scale, episodic sediment resuspension on the cycling of polychlorinated biphenyl congeners (PCBs) were examined using a spatially coordinated air and water sampling strategy conducted in southern Lake Michigan in the late winters of 1998, 1999, and 2000. We found no significant temporal changes in gas phase, dissolved phase, or suspended sediment PCB concentrations despite large-scale seasonal storms occurring before and after sampling campaigns. Only gas phase and suspended sediment PCBs varied spatially. Higher total suspended material (TSM) concentrations and fraction organic carbon (f_oc) were measured at sampling stations located in the near-shore region of southern Lake Michigan than at open-water sampling stations. Gas phase concentrations (ΣPCB_g) were higher in the west (0.436 ± 0.200 ng/m³, n = 11) and south (0.408 ± 0.286 ng/m³, n = 5) than the east (0.214 ± 0.082 ng/m³, n = 10) and central (0.253 ± 0.145 ng/m³, n = 8) regions of southern Lake Michigan. Dissolved phase concentrations (ΣPCB_d) averaged 0.18 ± 0.024 ng/L (n = 52); suspended sediment concentrations (ΣPCB_s) accounted for between 4% and 72% (23 ± 4%, n = 52) of the total ΣPCB concentrations (ΣPCB_T = ΣPCB_d + ΣPCB_s). Despite no consistent temporal variations in both dissolved phase or suspended sediment ΣPCB concentrations, there were temporal and spatial variations in the distribution shift between phases that can be linked to sediment resuspension, not a state of equilibrium. Specifically, our analysis suggests sediment resuspension results in preferential sorption of heavier, more chlorinated PCB congeners.     

Light-absorbing components in Lake Superior

Features of light absorption are critical to optical aspects of water quality and in regulating the signal available for remote sensing. Spectral characteristics and spatial patterns of light-absorbing components, and their relationships with optically active constituents, are documented for the Sturgeon River, Keweenaw Bay, and Lake Superior based on analyses of samples collected on two cruises (2006 and 2007, 20 sites). The absorption coefficient, a (m^− 1), is partitioned according to the additive components (a_x) of colored dissolved organic matter (a_CDOM), non-algal particles (a_NAP), phytoplankton (a_?), and water itself (a_w; known). The role of minerogenic particles and their iron content in regulating a_NAP is evaluated based on paired measurements by an individual particle analysis technique (Peng et al., 2009), through empirical analyses and Mie theory calculations of absorption by these particles (a_m). Spectral characteristics of a_NAP and a_? were consistent with those reported for other case 2 (i.e., phytoplankton not dominant) systems. However, the slope values that describe a_CDOM spectra for the bay and the lake were unusually low, suggesting an atypical composition for the lake's CDOM. The dominant absorbing component in the blue wavelengths was CDOM, representing ≥ 75% of a at a wavelength of 440 nm at all sites in the 2006 survey. A general gradient in both a_CDOM and a_NAP extended from the Sturgeon River, through the bay, into eastern Lake Superior in that survey. Relationships between a_x and optically active constituents were within the broad ranges reported for other case 2 systems. Minerogenic particles, related to their iron content, are demonstrated to be an important component of a_NAP.     

Diel timing of lake sturgeon (Acipenser fulvescens) activity revealed by satellite tags in the Laurentian Great Lake Basin

Lake sturgeon (Acipenser fulvescens) are slow-growing and long-lived residents of the Laurentian Great Lakes Basin, making them vulnerable to anthropogenic stressors. The behavior of lake sturgeon, and how it may result in conflict with human activities, remain incompletely understood. Our goal was to describe how environmental conditions, such as depth, temperature, and time of day, influence lake sturgeon activity. Data were recorded using pop-up archival satellite tags, which have provided insight into the ecology, physiology, and behavior of challenging to study marine megafauna, yet are rarely deployed within freshwater ecosystems despite parallel research needs. Adult lake sturgeon were fitted with satellite tags containing integrated accelerometers near spawning grounds in the Niagara River between Canada and the United States. We used the time-series of acceleration in recovered tags to test the hypothesis that lake sturgeon exhibit diel activity cycles in situ. We defined activity as acceleration greater than two standard deviations from a running average. We applied this classification to partial records obtained from satellite transmission, an approach that can render incomplete datasets a useable product for analysis. Lake sturgeon were most active nocturnally with a significant mean at 22:32 h. Generalized linear mixed-effect models showed temperature and time of day to be significant predictors of activity. Temporal cycles of fish activity should be understood and could be exploited to reduce human-fish conflict in the increasingly altered waterways of the globe.     

The role of the Yala swamp lakes in the conservation of Lake Victoria region haplochromine cichlids: Evidence from genetic and trophic ecology studies

Lake Kanyaboli, an isolated satellite lake of Lake Victoria, has been suggested as a potential refugium for haplochromine cichlids that have gone extinct in the main basin of Lake Victoria. Mitochondrial DNA (mtDNA) molecular markers, as well as feeding ecology studies, were employed in this study to re‐evaluate the evolutionary and ecological significance of six common Lake Kanyaboli haplochromines. The mtDNA marker revealed high genetic variability within four of the six haplochromine cichlids. Five haplotypes were discerned in Astatoreochromis alluaudi (n = 27), seven in Lipochromis maxillaris (n = 29), five in Astatotilapia nubila (n = 12) and 11 in the endangered Xystichromis phytophagus (n = 205). A haplotype genealogy suggests that Lake Kanyaboli harbours mtDNA haplotypes that could have been lost or not sampled in Lake Victoria, or could have arisen in situ. Lipochromis maxillaris appears to have undergone a recent demographic expansion. The pairwise F_STs indicated that only the comparison between X. phytophagus and A. nubila led to a non‐significant F_ST value. All other comparisons were significant at the 0.01 level, indicating the genetic distinctiveness of the haplochromines in the satellite lake. This could suggest that the lake harbours ‘pure’ relict populations of the haplochromines and therefore that Lake Kanyaboli can be considered a ‘genetic reservoir’. Gut content analysis of the six haplochromine species revealed that eight different food items were consumed. No single species fed exclusively on a single food item, but certain food items contributed higher proportions of the fish diet for each fish species. Resource partitioning therefore could be discerned within this haplochromine community. Thus, Lake Kanyaboli and similar satellite lakes provide an opportunity for conservation of both genetic and trophic diversity threatened by introduction of exotics in the Lake Victoria basin. Lake Kanyaboli should be recognized and conserved as important evolutionary significant units for Lake Victoria region haplochromine species.     

Differentiation between lake whitefish and cisco eggs based on diameter

Cisco (Coregonus artedi) and lake whitefish (Coregonus clupeaformis) are native fish species of management concern in the Laurentian Great Lakes that often overlap in spawning locations and timing. Thus, species-level inference from in situ sampling requires methods to differentiate their eggs. Genetic barcoding and hatching eggs to visually identify larvae are used but can be time and cost intensive. Observations in published literature indicate that lake whitefish eggs may be larger than cisco eggs in the Great Lakes, but this has not yet been substantiated. Samples from shared spawning grounds are unlikely to contain similarly sized or colored eggs from other species. Thus, we assessed whether lake whitefish and cisco eggs could be separated based on size alone. Fertilized, hardened eggs were collected in situ during spawning at Elk Rapids, Lake Michigan and Chaumont Bay, Lake Ontario and preserved in ethanol. Individual eggs were measured and genetically identified. Mean diameter for cisco (2.45 mm, SD = 0.22, n = 444) was smaller than for lake whitefish (3.21 mm, SD = 0.20, n = 99). We used classification trees to identify a species-separating size threshold of 2.88 mm (95% bootstrap CI = [2.877, 2.976]), which classified eggs with an accuracy rate of 96%. Differences between species across other samples from the same locations were mostly consistent with the threshold size, but we suggest validation if applying this method to other populations. Separation of cisco and lake whitefish eggs by diameter can be accurate, efficient, and especially suitable for large sample sizes.     

Evidence of successful river spawning by lake trout (Salvelinus namaycush) in the Lower Niagara River,Lake Ontario

Restoration of a wild-produced lake trout Salvelinus namaycush population in Lake Ontario has not been successful despite the adult population often meeting or exceeding restoration targets. Lack of high-quality spawning habitat in Lake Ontario is suggested as one impediment to recruitment of wild lake trout, although the quantity and location of spawning habitat is poorly understood. If high-quality spawning habitat is limited in Lake Ontario, lake trout may be using uncommon spawning locations such as rivers. Anecdotal angler accounts point to the Niagara River as a lake trout spawning location. To better understand the potential of the Niagara River as a spawning location, egg and juvenile fish collections were conducted 12–14 river kilometers from the mouth of the Niagara River from 2010 to 2012; and mature female lake trout with surgically implanted acoustic tags were monitored from 2015 to 2019. Genetic analyses confirmed 60% of collected eggs and 93% of collected post-hatch juvenile fish in the Niagara River were lake trout. Tagged female lake trout returned to the Niagara River over consecutive years during the spawning season. The short duration of lake trout presence in the river (mean = 56 days/year) suggests female lake trout use the Niagara River primarily for spawning. Diversity in spawning locations may provide lake trout population’s resilience against environmental variability through a portfolio effect. Improved identification of riverine spawning locations, including their overall contribution to wild recruitment, may be a useful tool for managers to restore a wild-produced population of lake trout in Lake Ontario.