Double-hexahistidine tag with high-affinity binding for protein immobilization, purification, and detection on ni-nitrilotriacetic acid surfaces

There is a particular need in protein analysis and purification for specific, functional, and generic methods of protein immobilization on solid supports. Here we describe a double-hexahistidine (His6) tag sequence, comprising two hexahistidines separated by an 11-amino acid spacer, which shows at least 1 order of magnitude stronger binding to Ni-NTA-modified surfaces than a conventional single-His6 tag or two single-His6 tags at N- and C-termini. Using, as a model, tagged versions of green fluorescent protein (GFP), stable and tight binding of the double-His6 tag/Ni-NTA interaction was demonstrated by competitive elution from Ni-NTA agarose beads, surface plasmon resonance on a Ni-NTA chip, and ELISA in Ni-NTA microwell plates. Protein purification by Ni-NTA chromatography was improved by a 6-8-fold increase in imidazole concentration required for elution, while the dissociation rate of double-His6 GFP from Ni-NTA chips in SPR (BIAcore) was 10 times slower than for single-His6-tagged proteins. ELISA assays and protein microarrays constructed with double-His6 GFP demonstrated greater detection sensitivity with anti-His antibodies and Ni-NTA conjugates. Moreover, the double-His6 tag could serve simultaneously both for protein immobilization and for detection on surfaces. The double-His6 peptide has the potential to be a universal tag for protein immobilization and detection on arrays and single-step purification of proteins from crude mixtures.     

Molecular biomimetics: nanotechnology through biology

Proteins, through their unique and specific interactions with other macromolecules and inorganics, control structures and functions of all biological hard and soft tissues in organisms. Molecular biomimetics is an emerging field in which hybrid technologies are developed by using the tools of molecular biology and nanotechnology. Taking lessons from biology, polypeptides can now be genetically engineered to specifically bind to selected inorganic compounds for applications in nano- and biotechnology. This review discusses combinatorial biological protocols, that is, bacterial cell surface and phage-display technologies, in the selection of short sequences that have affinity to (noble) metals, semiconducting oxides and other technological compounds. These genetically engineered proteins for inorganics (GEPIs) can be used in the assembly of functional nanostructures. Based on the three fundamental principles of molecular recognition, self-assembly and DNA manipulation, we highlight successful uses of GEPI in nanotechnology.     

Formation of nanoparticle arrays on S-layer protein lattices

Crystalline bacterial cell surface layers (S-layers) composed of identical protein units have been used as binding templates for well-organized arrangements of nanoparticles. Isolated S-layer proteins were recrystallized into monomolecular arrays on solid substrates (such as silicon wafers and SiO2-coated grids) and in suspension forming so-called self-assembly products. These S-layer assemblies were studied by atomic force microscopy and transmission electron microscopy (TEM). The orientation of the S-layer lattice, exhibiting anisotropic surface properties, on the solid surface and on the self-assembly products, was compared with the orientation on the bacterial cell. On both bacterial cells and SiO2 surfaces the outer face of the S-layer protein was exposed. On the self-assembly products occasionally the inner face was also visible. Metal- and semiconductor nanoparticles 2 to 10 nm in mean diameter were covalently or electrostatically bound to the solid-supported S-layers and self-assembly products. TEM studies reveal that upon activation of carboxyl groups in the S-layer lattice with 1-ethyl-3,3'(dimethylaminopropyl)carbodiimide (EDC), a close-packed monolayer of 4-nm amino-functionalized CdSe nanoparticles could be covalently established on the S-layer lattice. Because of electrostatic interactions, anionic citrate-stabilized Au nanoparticles (5 nm in diameter) formed a superlattice at those sites where the inner face of the S-layer lattice was exposed. In contrast, cationic semiconductor nanoparticles (such as amino-functionalized CdSe particles) formed arrays on the outer face of the solid-supported S-layer lattices.     

Strong and heterogeneous adsorption of infectious bursal disease VP2 subviral particle with immobilized metal ions dependent on two surface histidine residues

VP2, the single outer protein of infectious bursal disease virus capsid, can self-assemble into T = 1 subviral particle (SVP), which can be efficiently purified by immobilized metal ion affinity chromatography (IMAC). In this study, a systemic investigation of the adsorption behavior of VP2 SVP on Ni-NTA resin was performed to identify that His253 and His249 on the surface of SVP are the key factors accounted for the strong and heterogeneous interaction. First, an untagged VP2-441 SVP was constructed, expressed, and purified by IMAC to demonstrate that SVP can interact with immobilized Ni2+ ions on NTA resin without an inserted His tag. Second, equilibrium adsorption studies were used to demonstrate that SVP has a higher affinity to the immobilized Ni2+ ions than a model protein, bovine serum albumin, although the maximum amount of SVP bound per volume resin is limited by the pore size of the resin as verified by confocal microscopic analysis. Third, based on structural analysis and computer modeling, His253 and His249 on the surface of SVP are responsible for a strong heterogeneous and multiple adsorption with the immobilized Ni2+ ions; and this was confirmed by a point-mutation experiment. This is the first example to elucidate the interaction between the immobilized metal ions and viral particles at molecular level. A detailed understanding of SVP-immobilized metal ion interactions can provide useful strategies for engineering icosahedral protein nanoparticles to achieve a simple and one-step purification by IMAC.     

Dual Functional Modification of Alkaline Amino Acids Induces the Self‐Assembly of Cylinder‐Like Tobacco Mosaic Virus Coat Proteins into Gear‐Like Architectures

Herein, the assembly of 3D uniform gear‐like architectures is demonstrated with a tobacco mosaic virus (TMV) disk as a building block. In this context, the intrinsic behavior of the TMV disk that promotes its assembly into nanotubes is altered by a synergistic effect of dual functional modifications at the 53rd arginine mutation and the introduction of lysine groups in the periphery at 1st and 158th positions of the TMV disk, which results in the formation of 3D gear‐like superstructures. Therein, the 53rd arginine moiety significantly strengthens the linkage between TMV disks in the alkaline environment through hydrogen bond interactions. The charge of lysine‐modified lateral surfaces is partially neutralized in the alkaline solution, which induces the TMV disk to form a gear‐like architecture to maintain its structural stability by exploiting the electrostatic repulsion between neighboring TMV disks. This study not only provides explicit evidence regarding the molecular‐level understanding of how the modification of site‐specific amino acid affects the assembly of resultant superstructures but also encourages the fabrication of functional protein‐based nanoarchitectures.     

Deposition of platinum clusters on surface-modified Tobacco mosaic virus

Nanoscaled Pt conductors were prepared from genetically engineered Tobacco mosaic virus (TMV) templates through Pt cluster deposition on the outer surface of the TMV. Pt clusters were synthesized and deposited on the engineered TMV with surface-exposed cysteine via the in situ mineralization of hexachloroplatinate anions. This deposition was driven by the specific binding between thiols and the solid metal clusters. In addition, Pt-thiolate adducts are suggested to form on the engineered TMV in aqueous solutions that work as nucleation sites for the formation of the Pt clusters. The specific binding between Pt clusters and the engineered TMV template was investigated using UV/vis spectrophotometry and quartz crystal microbalance (QCM) analysis. The electric conductance of Pt-deposited TMV was greater than that of the uncoated TMV virion particles. This result suggests the application of metal cluster-deposited engineered TMV in future electrical devices such as rapid response sensors.     

Morphology evolution of rutile particles from nanorods to microcones, again microspheres via self-assembly in Ionic Liquids (ILs) solution

Morphology evolution of rutile particles from nanorods to microcones, again microspheres were realized with the increasing of TiCl₄ via self-assembly under hydrothermal condition. A kind of ionic liquids, 1-octyl-3-methylimidazole bromide ([C₈mim]Br) was used to assist the fabrication of rutile nanostructures in the system. Characterizations of the products were performed by X-ray diffraction (XRD), scanning electron microscopy (SEM), and transmission electron microscopy (TEM). SEM and TEM micrographs showed that the presence of [C₈mim]Br apparently resulted in the aggregation of rutile particles via self-assembly, till porous structures was formed on the surface of microspheres. Moreover, the microspheres were easy to crack when they were precipitated from solution, and the cracks can be widened under radiation of electron beam, simultaneously accompanied by the exfoliation of rutile whiskers. The corresponding mechanism of self-assembly was proposed to explain the effect of [C₈mim]Br on fabrication of these rutile nanostructures.     

Tuning the morphology of self-assembled nano-structures of phthalocyaninato zinc complex bearing two binaphthyl units

The self-assembly properties of phthalocyaninato zinc complex Zn{Pc(OBNP)₂} bearing two aromatic binaphthyl units at the non-peripheral positions in mixed chloroform and methanol solution have been studied by Fourier transform infrared (FTIR) spectroscopy, transmission electronic microscopy (TEM), scanning electronic microscopy (SEM), and X-ray diffraction (XRD) techniques. The compound self-assembles into ordered nano-structures with hollow sphere morphology depending on the intermolecular π–π interaction at ambient temperature. However, addition of equal amount of 1,4-diazabicyclo[2.2.2]octane (DABCO) into the same solution system induces the formation of nano-rods, due to the dominant Zn–N metal–ligand coordination bonding interaction between the zinc center of Zn{Pc(OBNP)₂} molecule and the nitrogen atom of DABCO molecule during the self-assembly process. This reveals the effect of synergistic noncovalent interaction of π–π interaction with metal–ligand coordination bonding on tuning the morphology of self-assembled nano-structures of Zn{Pc(OBNP)₂}. The electronic absorption spectra of both the nano-scale hollow spheres and nano-rods have a blue-shift, compared with that of the compound in chloroform solution, which reveals the formation of H-aggregates in the two kinds of aggregates. Furthermore, XRD data confirm the molecular packing models in these aggregates. The present study will be helpful in designing and preparing self-assembled nano-structures of phthalocyanine derivatives with controlled molecular packing conformation and morphology through molecular modification.     

Self-assembly of small gold colloids with functionalized gold nanorods

We present a general strategy to stabilize gold nanorod suspensions with mono- and bifunctional polyethylene glycol (PEG) and to attach a controlled number of nanoparticles or biomolecules. Characterization by gel electrophoresis, transmission electron microscopy (TEM), and optical dark-field microscopy show the specific binding of functionalized nanorods to their target while avoiding nonspecific binding to substrates, matrices, and other particles. Such nanorods are well suited for self-assembly of nanostructures and single-molecule labeling.     

Rigid dimers formed through strong interdigitated H-bonds yield compact 1D supramolecular helical polymers

Hierarchical self-assembly of small abiotic molecular modules interacting through noncovalent forces is increasingly being used to generate functional structures and materials for electronic, catalytic, and biomedical applications. The greatest control over the geometry in H-bond supramolecular architectures, especially in H-bonded supramolecular polymers, can be achieved by using conformationally rigid molecular modules undergoing self-assembly through strong H-bonds. Their binding strength depends on the multiplicity of the H-bonds, the nature of donor/acceptor pairs and their secondary attractive/repulsive interactions. Here a functionalized molecular module is described, which is capable of self-associating through self-complementary H-bonding patterns comprising four strong and two medium-strength H-bonds to form dimers. The self-association of these phenylpyrimidine-based dimers through directional H-bonding between two lateral pyridin-2(1H)-one units of neighboring molecules allows the formation of highly compact 1D supramolecular polymers by self-assembly on graphite. A concentration-dependent study by scanning tunneling microscopy at the solid-liquid interface, corroborated by dispersion-corrected density functional studies, reveals the controlled generation of either linear supramolecular 2D arrays, or long helical supramolecular polymers with a high shape persistence.     

Investigations of Al:CdS/PVA nanocomposites: A joint theoretical and experimental approach

In the present work we investigate the aluminium doped cadmium sulphide (Al:CdS) nanoparticles embedded in polyvinyl alcohol (PVA) matrix by chemical route and density functional theory (DFT) based simulations. Supertetrahedron (T_n) cluster models are considered for the simulation of CdS nanoparticles. Using DFT simulations on T_n clusters, we observe that band gap of ligated clusters is slightly more as compare to bare clusters. This indicates the ability of organic ligands (PVA) to open the band gap of inorganic CdS nanoclusters. Negative value of binding energy indicates the stability of the inorganic–organic hybrid system. Frontier molecular orbitals (FMOs) indicate the charge transfer between organic and inorganic moieties which provides stability and longevity to nanoparticles, a prime function of ligands in nanocomposites. Absorption spectra of pure and doped clusters are calculated using time dependent density functional theory (TDDFT). CdS/PVA and Al:CdS/PVA samples are synthesized at room temperature by chemical method. Their structure, size and band gap is characterized by XRD, TEM, FTIR and UV spectroscopy. Optical band gap values as observed experimentally are in agreement with simulated TDDFT results.     

Quantifying Lipid Contents in Enveloped Virus Particles with Plasmonic Nanoparticles

Phosphatidylserine (PS) and monosialotetrahexosylganglioside (G_M1) are examples of two host‐derived lipids in the membrane of enveloped virus particles that are known to contribute to virus attachment, uptake, and ultimately dissemination. A quantitative characterization of their contribution to the functionality of the virus requires information about their relative concentrations in the viral membrane. Here, a gold nanoparticle (NP) binding assay for probing relative PS and G_M1 lipid concentrations in the outer leaflet of different HIV‐1 and Ebola virus‐like particles (VLPs) using sample sizes of less than 3 × 10⁶ particles is introduced. The assay evaluates both scattering intensity and resonance wavelength, and determines relative NP densities through plasmon coupling as a measure for the target lipid concentrations in the NP‐labeled VLP membrane. A correlation of the optical observables with absolute lipid contents is achieved by calibration of the plasmon coupling‐based methodology with unilamellar liposomes of known PS or G_M1 concentration. The performed studies reveal significant differences in the membrane of VLPs that assemble at different intracellular sites and pave the way to an optical quantification of lipid concentration in virus particles at physiological titers.     

Surfactant-free synthesis of Bi2WO6 multilayered disks with visible-light-induced photocatalytic activity

The synthesis of bismuth tungstate (Bi₂WO₆) multilayered disk which was constructed by oriented square nanoplates was easily realized via a simple surfactant-free hydrothermal method. X-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), and high-resolution transmission electron microscopy (HRTEM) were used to investigate the as-obtained product. The results indicated that the three-dimensional (3D) Bi₂WO₆ multilayered disk was constructed by self-assembly of square nanoplates via a perfect oriented manner. The formation mechanism of the product was carefully investigated on the basis of the results of time-dependent experiments. In addition, studies of the photocatalytic property demonstrated that the as-obtained Bi₂WO₆ could exhibit excellent visible-light-driven photocatalytic activity for the degradation of Rhodamine B (RhB).     

Fabrication of fluorescent hollow capsule with CdS–polyelectrolyte composite films

CdS–polyelectrolyte (CdS–PE) clusters were synthesized by using polyelectrolyte as the stabilizing agent in the aqueous solution. The blue shift of UV–Vis and Fluorescent spectra, the TEM images show the formation of nanoparticles within the polyelectrolyte chains. Using the normal polyelectrolyte hollow capsules as template, the CdS–PE clusters as functional layer materials, the uniform organic–inorganic hollow microspheres have been produced by layer-by-layer (LbL) self-assembly technology.     

Convective assembly of 2D lattices of virus-like particles visualized by in-situ grazing-incidence small-angle X-ray scattering

The rapid assembly of icosohedral virus-like particles (VLPs) into highly ordered (domain size > 600 nm), oriented 2D superlattices directly onto a solid substrate using convective coating is demonstrated. In-situ grazing-incidence small-angle X-ray scattering (GISAXS) is used to follow the self-assembly process in real time to characterize the mechanism of superlattice formation, with the ultimate goal of tailoring film deposition conditions to optimize long-range order. From water, GISAXS data are consistent with a transport-limited assembly process where convective flow directs assembly of VLPs into a lattice oriented with respect to the water drying line. Addition of a nonvolatile solvent (glycerol) modified this assembly pathway, resulting in non-oriented superlattices with improved long-range order. Modification of electrostatic conditions (solution ionic strength, substrate charge) also alters assembly behavior; however, a comparison of in-situ assembly data between VLPs derived from the bacteriophages MS2 and Qβ show that this assembly process is not fully described by a simple Derjaguin-Landau-Verwey-Overbeek model alone.     

Glucose-sensitive polyelectrolyte nanocapsules based on layer-by-layer technique for protein drug delivery

The glucose-responsive nanocapsules [CS-NAC/p(GAMA-r-AAPBA)] were readily fabricated with modified chitosan (CS-NAC) and random glycopolymer poly(d-gluconamidoethyl methacrylate-r-3-acrylamidophenylboronic acid) p(GAMA-r-AAPBA) as the alternant multilayered polyelectrolyte hybrid shell via layer-by-layer self-assembly after etching the amino functionalized SiO₂ spheres by NH₄F/HF. The spherical and hollow structure of nanocapsules was confirmed by TEM analysis and there was no clear collapse found after removal of the sacrificial cores. The reversible zeta potential changes of the nanocapsule materials evaluated the reversible glucose sensitivity. Besides, this system demonstrated a good capacity for encapsulation and loading insulin entrapped in nanocapsules as model protein drug. A good biocompatibility of the material was confirmed by the cell viability. In vitro release of insulin experiments revealed that no obvious release was found in acidic condition and the release could be normally conducted at physiological pH. These results implied that it was feasible for nanocapsules to be used in controlled release drug delivery system.     

Design,synthesis, and self-assembly of optically active perylenetetracarboxylic diimide bearing two peripheral chiral binaphthyl moieties

An optically active perylenetetracarboxylic diimide (PTCDI) bearing two optically active binaphthyl moieties has been designed and synthesized. The self-assembly properties of these novel PTCDI derivatives in DMF/H₂O were systematically investigated by electronic absorption, circular dichroism (CD) spectra, IR spectroscopy, transmission electron microscopy (TEM), scanning electron microscopy (SEM), and X-ray diffraction (XRD) technique. Observation of CD signal in the whole absorption region of PTCDI chromophore, indicates effective chiral information transfer from the chiral binaphthyl units to the central PTCDI chromophore at molecular level. The intermolecular π–π interaction between PTCDI rings together with the additionally formed hydrogen bonds between the crown ether moieties of (S)-1 and additional water molecules and the chiral discrimination of periphery chiral side chains induces further intensified asymmetrical perturbation of the chiral binaphthyl units to the central PTCDI chromophore during the self-assembly process, resulting in the formation of right-handed helical arrangement of corresponding molecules in a stack of PTCDI chromophores in aggregates. In addition, the formed nanostructures were revealed to show good semiconducting properties.     

The Protein Corona of Plant Virus Nanoparticles Influences their Dispersion Properties,Cellular Interactions,and In Vivo Fates

Biomolecules in bodily fluids such as plasma can adsorb to the surface of nanoparticles and influence their biological properties. This phenomenon, known as the protein corona, is well established in the field of synthetic nanotechnology but has not been described in the context of plant virus nanoparticles (VNPs). The interaction between VNPs derived from Tobacco mosaic virus (TMV) and plasma proteins is investigated, and it is found that the VNP protein corona is significantly less abundant compared to the corona of synthetic particles. The formed corona is dominated by complement proteins and immunoglobulins, the binding of which can be reduced by PEGylating the VNP surface. The impact of the VNP protein corona on molecular recognition and cell targeting in the context of cancer and thrombosis is investigated. A library of functionalized TMV rods with polyethylene glycol (PEG) and peptide ligands targeting integrins or fibrin(ogen) show different dispersion properties, cellular interactions, and in vivo fates depending on the properties of the protein corona, influencing target specificity, and non‐specific scavenging by macrophages. Our results provide insight into the in vivo properties of VNPs and suggest that the protein corona effect should be considered during the development of efficacious, targeted VNP formulations.     

Label-free electrochemical detection for aptamer-based array electrodes

An electrochemical impedance spectroscopy method of detection for aptamer-based array electrodes is reported in which the binding of aptamers immobilized on gold electrodes leads to impedance changes associated with target protein binding events. Human IgE was used as a model target protein and incubated with the aptamer-based array consisting of single-stranded DNA containing a hairpin loop. To increase the binding efficiency for proteins, a hybrid modified layer containing aptamers and cysteamine was fabricated on the photolithographic gold surface through molecular self-assembly. Atomic force microscopy analysis demonstrated that human IgE could be specifically captured by the aptamer and stand well above the self-assembled monolayer (SAM) surface. Compared to immunosensing methods using anti-human IgE antibody as the recognition element, impedance spectroscopy detection could provide higher sensitivity and better selectivity for aptamer-modified electrodes. The results of this method show good correlation for human IgE in the range of 2.5-100 nM. A detection limit of 0.1 nM (5 fmol in a 50-microL sample) was obtained, and an average of the relative standard deviation was <10%. The method herein describes the first label-free detection for arrayed electrodes utilizing electrochemical impedance spectroscopy.