Pyrene-assisted efficient photolysis of disulfide bonds in DNA-based molecular engineering

An efficient pyrene-assisted method has been developed for the photolysis of disulfide bonds, with 77% of disulfides cleaved after only 20 min of irradiation (0.3W) at 350 nm. By employing a DNA framework, it was possible to observe both a distance-dependent cleavage pathway and a radical-forming photoreaction mechanism. To demonstrate the biomedical applications of such pyrene disulfide molecular assemblies, a DNA micelle structure and DNAzyme analog were further studied. Rapid photodriven disassembly of DNA micelles was achieved, allowing the further design of controlled pharmaceutical release at the target region and at a specific time. The DNAzyme analog can carry out multiple turnover reactions that follow the Michaelis-Menten equation, with a kcat of 10.2 min(-1) and a KM of 46.3 μM (0.3W 350 nm light source), comparable to that of common DNAzymes, e.g., 8-17 DNAzyme.     

Nucleic Acid Enzyme-Activated CRISPR-Cas12a With Circular CRISPR RNA for Biosensing

clustered regularly interspaced short palindromic repeats (CRISPR)-Cas systems are increasingly used in biosensor development. However, directly translating recognition events for non-nucleic acid targets by CRISPR into effective measurable signals represents an important ongoing challenge. Herein, it is hypothesized and confirmed that CRISPR RNAs (crRNAs) in a circular topology efficiently render Cas12a incapable of both site-specific double-stranded DNA cutting and nonspecific single-stranded DNA trans cleavage. Importantly, it is shown that nucleic acid enzymes (NAzymes) with RNA-cleaving activity can linearize the circular crRNAs, activating CRISPR-Cas12a functions. Using ligand-responsive ribozymes and DNAzymes as molecular recognition elements, it is demonstrated that target-triggered linearization of circular crRNAs offers great versatility for biosensing. This strategy is termed as “NAzyme-Activated CRISPR-Cas12a with Circular CRISPR RNA (NA3C).” Use of NA3C for clinical evaluation of urinary tract infections using an Escherichia coli-responsive RNA-cleaving DNAzyme to test 40 patient urine samples, providing a diagnostic sensitivity of 100% and specificity of 90%, is further demonstrated.     

Entrapment of fluorescence signaling DNA enzymes in sol-gel-derived materials for metal ion sensing

Three fluorescence signaling DNA enzymes (deoxyribozymes or DNAzymes) were successfully immobilized within a series of sol-gel-derived matrixes and used for sensing of various metal ions. The DNAzymes are designed such that binding of appropriate metal ions induces the formation of a catalytic site that cleaves a ribonucleotide linkage within a DNA substrate. A fluorophore (fluorescein) and a quencher (DABCYL, [4-(4-dimethylaminophenylazo)benzoic acid]) were placed on the two deoxythymidines flanking the ribonucleotide to allow the generation of fluorescence upon the catalytic cleavage at the RNA linkage. In general, all DNAzymes retained at least partial catalytic function when entrapped in either hydrophilic or hydrophobic silica-based materials, but displayed slower response times and lower overall signal changes relative to solution. Interestingly, it was determined that maximum sensitivity toward metal ions was obtained when DNAzymes were entrapped into composite materials containing approximately 40% of methyltrimethoxysilane (MTMS) and approximately 60% tetramethoxysilane (TMOS). Highly polar materials derived from sodium silicate, diglycerylsilane, or TMOS had relatively low signal enhancements, while materials with very high levels of MTMS showed significant leaching and low signal enhancements. Entrapment into the hybrid silica material also reduced signal interferences that were related to metal-induced quenching; such interferences were a significant problem for solution-based assays and for polar materials. Extension of the solid-phase DNAzyme assay toward a multiplexed assay format for metal detection is demonstrated, and shows that sol-gel technology can provide new opportunities for the development of DNAzyme-based biosensors.     

Unimolecular catalytic DNA biosensor for amplified detection of L-histidine via an enzymatic recycling cleavage strategy

Fluorescence catalytic beacons have emerged as a general platform for sensing applications. However, almost all such sensing systems need covalent modification of the DNAzymes with fluorophore-quencher pairs, which may require elaborate design of the synthetic routes and many heavy and complicated synthetic steps and result in increased cost and lower synthesis yield. Here we report the construction of fluorescent cascadic catalytic beacons. With separation of the molecular recognition module from the signal reporter, this new design both avoids DNAzyme modifications and improves sensitivity through an endonuclease-based cascadic enzymatic signal amplification. This allows detection of L-histidine with high sensitivity (LOD = 200 nM) and excellent specificity. The proposed sensing system has also been used for detection of L-histidine in cellular homogenate with satisfactory results.     

Two Well‐Miscible Acceptors Work as One for Efficient Fullerene‐Free Organic Solar Cells

High‐performance ternary organic solar cells are fabricated by using a wide‐bandgap polymer donor (bithienyl‐benzodithiophene‐alt‐fluorobenzotriazole copolymer, J52) and two well‐miscible nonfullerene acceptors, methyl‐modified nonfullerene acceptor (IT‐M) and 2,2′‐((2Z ,2′Z )‐((5,5′‐(4,4,9,9‐tetrakis(4‐hexylphenyl)‐4,9‐dihydros‐indaceno[1,2‐b :5,6‐b ′]dithiophene‐2,7‐diyl)bis(4‐((2‐ethylhexyl)oxy)thiophene‐5,2‐diyl))bis(methanylylidene))bis(3‐oxo‐2,3‐dihydro‐1H ‐indene‐2,1‐diylidene))dimalononitrile (IEICO). The two acceptors with complementary absorption spectra and similar lowest unoccupied molecular orbital levels show excellent compatibility in the blend due to their very similar chemical structures. Consequently, the obtained ternary organic solar cells (OSC) exhibits a high efficiency of 11.1%, with an enhanced short‐circuit current density of 19.7 mA cm^?2 and a fill factor of 0.668. In this ternary system, broadened absorption, similar output voltages, and compatible morphology are achieved simultaneously, demonstrating a promising strategy to further improve the performance of ternary OSCs.     

DNAzyme-based colorimetric sensing of lead (Pb(2+)) using unmodified gold nanoparticle probes

Novel functional oligonucleotides, especially DNAzymes with RNA-cleavage activity, have been intensively studied due to their potential applications in therapeutics and sensors. Taking advantage of the high specificity of 17E DNAzyme for Pb(2+), highly sensitive and selective fluorescent, electrochemical and colorimetric sensors have been developed for Pb(2+). In this work, we report a simple, sensitive and label-free 17E DNAzyme-based sensor for Pb(2+) detection using unmodified gold nanoparticles (GNPs) based on the fact that unfolded single-stranded DNA could be adsorbed on the citrate protected GNPs while double-stranded DNA could not. By our method the substrate cleavage by the 17E DNAzyme in the presence of Pb(2+) could be monitored by color change of GNPs, thereby Pb(2+) detection was realized. The detection of Pb(2+) could be realized within 20?min, with a detection limit of 500?nM. The selectivity of our sensor has been investigated by challenging the sensing system with other divalent metal ions. Since common steps such as modification and separation could be successfully avoided, the sensor developed here could provide a simple, cost-effective yet rapid and sensitive measurement tool for Pb(2+) detection and may prove useful in the development of sensors for clinical toxicology and environmental monitoring in the future.     

Amplified chemiluminescence surface detection of DNA and telomerase activity using catalytic nucleic acid labels

A G-rich nucleic acid sequence binds hemin and yields a biocatalytic complex (DNAzyme) of peroxidase activity, namely, the biocatalyzed generation of chemiluminescence in the presence of H(2)O(2) and luminol. The DNAzyme is used as a label for the amplified detection of DNA, or for the analysis of telomerase activity in cancer cells, using chemiluminescence as an output signal. In one configuration, the analyzed DNA is hybridized with a primer nucleic acid that is associated with a Au surface, and the DNAzyme label is hybridized with the surface-confined analyte DNA. The DNA is analyzed with a detection limit of approximately 1 x 10(-)(9) M. In the second system, telomerase from HeLa cancer cells induces telomerization of a primer associated with a Au surface and the complementary DNAzyme units are hybridized with the telomere to yield the chemiluminescence. The detection limit of the system corresponds to 1000 HeLa cells in the analyzed sample.     

Allosteric Nucleic Acid Enzyme: A Versatile Stimuli-Responsive Tool for Molecular Computing and Biosensing Nanodevices

Allostery is a naturally occurring mechanism in which effector binding induces the modulation and fine control of a related biomolecule function. Deoxyribozyme (DNAzyme) with catalytic activity and substrate recognition ability is ideal to be regulated by allosteric strategies. However, the current regulations frequently confront various obstacles, such as severe activity decay, signal leakage, and limited effectors. In this work, a rational regulation strategy for developing versatile effectors-responsive allosteric nucleic acid enzyme (ANAzyme) by introducing an allosteric domain in response to diverse effectors is established. The enzyme-like activity of this re-engineered ANAzyme can be modulated in a more predictable and fine way compared with the previous DNAzyme regulation strategies. Based on the allosteric strategy, the construction of allosterically coregulatory nanodevices and a series of basic logic gates and logic circuits are achieved, demonstrating that the proposed ANAzyme-regulated strategy showed great potential in molecular computing. Given these facts, the rational design of ANAzyme with the allosteric domain presented here can expand the available toolbox to develop a variety of stimuli-responsive allosteric DNA materials, including molecular machines, computing systems, biosensing platforms, and gene-silencing tools.     

Immobilization of a catalytic DNA molecular beacon on Au for Pb(II) detection

A Pb(II)-specific DNAzyme fluorescent sensor has been modified with a thiol moiety in order to immobilize it on a Au surface. Self-assembly of the DNAzyme is accomplished by first adsorbing the single-thiolated enzyme strand (HS-17E-Dy) followed by adsorption of mercaptohexanol, which serves to displace any Au-N interactions and ensure that DNA is bound only through the S-headgroup. The preformed self-assembled monolayer is then hybridized with the complementary fluorophore-containing substrate strand (17DS-Fl). Upon reaction with Pb(II), the substrate strand is cleaved, releasing a fluorescent fragment for detection. Fluorescence intensity may be correlated with original Pb(II) concentration, and a linear calibration was obtained over nearly four decades: 10 microM > or = [Pb(II)] > or = 1 nM. The immobilized DNAzyme is a robust system; it may be regenerated after cleavage, allowing multiple sensing cycles. In addition, drying of fully assembled DNAzyme before reaction with Pb(II) does not significantly affect analytical performance. These results demonstrate that, in comparison with solution-based schemes, immobilization of the DNAzyme sensor onto a Au surface lowers the detection limit (from 10 to 1 nM), maintains activity and specificity, and allows sensor regeneration and long-term storage. Realization of Pb(II) detection through an immobilized DNAzyme is the first important step toward creation of a stand-alone, portable Pb(II) detection device such as those immobilizing DNAzyme recognition motifs in the nanofluidic pores of a microfluidic-nanofluidic hybrid multilayer device.     

Modification of indium tin oxide electrodes with nucleic acids: detection of attomole quantities of immobilized DNA by electrocatalysis

Indium tin oxide electrodes were modified with DNA, and the guanines in the immobilized nucleic acid were used as a substrate for electrocatalytic oxidation by Ru(bpy)3(3+) (bpy = 2,2'-bipyridine). Nucleic acids were deposited onto 12.6-mm2 electrodes from 9:1 DMF/water mixtures buffered with sodium acetate. The DNA appeared to denature in the presence of DMF, leading to adsorption of single-stranded DNA. The nucleic acid was not removed by vigorous washing or heating the electrodes in water, although incubation in phosphate buffer overnight liberated the adsorbed biomolecule. Acquisition of cyclic voltammograms or chronoamperomograms of Ru(bpy)3(2+) at the modified electrodes produced catalytic signals indicative of oxidation of the immobilized guanine by Ru(III). The electrocatalytic current was a linear function of the extent of modification with a slope of 0.5 microA/pmol of adsorbed guanine; integration of the current-time traces gave 2.2+/-0.4 electrons/guanine molecule. Use of long DNA strands therefore gave steep responses in terms of the quantity of adsorbed DNA strand. For example, electrodes modified with a 1497-bp PCR product from the HER-2 gene produced detectable catalytic currents when as little as 550 amol of strand was adsorbed, giving a sensitivity of 44 amol/mm2.     

Bifunctional colorimetric oligonucleotide probe based on a G-quadruplex DNAzyme molecular beacon

A label-free bifunctional colorimetric oligonucleotide probe for DNA and protein detection has been developed on the basis of a novel catalytic molecular beacon consisting of two hairpin structures and a split G-quadruplex DNAzyme in the middle. The two loops of this molecular beacon consist of thrombin aptamer sequence and the complementary sequence of target DNA, which are utilized to sense single-stranded DNA and thrombin. The G-quadruplex DNAzyme can effectively catalyze the H(2)O(2)-mediated oxidation of 3,3',5,5'-tetramethylbenzidine sulfate to generate colorimetric signal. Upon addition of the target, the DNA or protein combines with one loop of the hairpin structures, and meanwhile drives the middle G-quadruplex DNAzyme to dissociate. This results in a decrease of catalytic activity, enabling the separate analysis of DNA and thrombin.     

Ultrathin and Switchable Nanoporous Catalytic Membranes of Polystyrene‐b‐poly‐4‐Vinyl Pyridine Block Copolymer Spherical Micelles

An easy fabrication of close‐packed and block copolymer micelles‐based ultrathin membranes for water purification, separation, catalytic, and dye degradation applications is reported. Nanoporous membranes based on the self‐assembly of 2‐(4′‐hydroxybenzeneazo) benzoic acid (HABA)‐polystyrene‐b‐poly(4‐vinylpyridine) (PS‐b‐P4VP) diblock copolymers supramolecular complexes are prepared by simple spin coating on pore‐filled polyethylene terephthalate (PET) track‐etched membranes. The prepared membranes are characterized by scanning electron microscopy, atomic force microscopy, transmission electron microscopy, and water permeation studies. The separation performance is studied by lysozyme protein rejection. The prepared membranes are also used to in situ synthesize gold nanoparticles in the corona of PS‐b‐P4VP spheres for catalytic activity towards the reduction of p‐nitrophenol and degradation of congo red dye in flow through operation mode in a stirred cell membrane reactor. More than 95% reduction for p‐nitrophenol and >98% degradation of Congo red at a sufficiently high flux indicates its suitability for catalytic transformation and environmental remediation applications.     

DNA电化学传感器对金属离子检测的研究进展

由于DNAzyme、T-T和C-C之间错配以及G-四链体等能与金属离子特异性结合,基于DNA与金属离子相互作用来检测金属离子的DNA电化学传感器逐渐发展起来。介绍了几种DNA电化学传感器检测金属离子的新方法,并对DNA电化学传感器对金属离子检测的发展趋势和研究方向进行了展望。     

Unveiling Active Sites for the Hydrogen Evolution Reaction on Monolayer MoS2

Here, the hydrogen evolution reaction (HER) activities at the edge and basal‐plane sites of monolayer molybdenum disulfide (MoS₂) synthesized by chemical vapor deposition (CVD) are studied using a local probe method enabled by selected‐area lithography. Reaction windows are opened by e‐beam lithography at sites of interest on poly(methyl methacrylate) (PMMA)‐covered monolayer MoS₂ triangles. The HER properties of MoS₂ edge sites are obtained by subtraction of the activity of the basal‐plane sites from results containing both basal‐plane and edge sites. The catalytic performances in terms of turnover frequencies (TOFs) are calculated based on the estimated number of active sites on the selected areas. The TOFs follow a descending order of 3.8 ± 1.6, 1.6 ± 1.2, 0.008 ± 0.002, and 1.9 ± 0.8 × 10^?4 s^?1, found for 1T′‐, 2H‐MoS₂ edges, and 1T′‐, 2H‐MoS₂ basal planes, respectively. Edge sites of both 2H‐ and 1T′‐MoS₂ are proved to have comparable activities to platinum (≈1–10 s^?1). When fitted into the HER volcano plot, the MoS₂ active sites follow a trend distinct from conventional metals, implying a possible difference in the reaction mechanism between transition‐metal dichalcogenides (TMDs) and metal catalysts.     

DNAzyme molecular beacon probes for target-induced signal-amplifying colorimetric detection of nucleic acids

A novel DNAzyme molecular beacon (DNAzymeMB) strategy was developed for target-induced signal-amplifying colorimetric detection of target nucleic acids. The DNAzymeMB, which exhibits peroxidase activity in its free hairpin structure, was engineered to form a catalytically inactive hybrid through hybridization with a blocker DNA. The presence of target DNA leads to dissociation of the DNAzymeMB from the inactive hybrid through hybridization with the blocker DNA. This process results in recovery of the catalytically active DNAzymeMB, which can catalyze a colorimetric reaction that signals the presence of the target DNA. In addition, a primer was rationally designed to anneal to the blocker DNA of the blocker/target DNA duplex and displace the bound target DNA during the extension reaction. The released target DNA triggers the next cycle involving hybridization with blocker DNA, DNAzymeMB dissociation, primer extension, and target displacement. This unique amplifying strategy leads to the generation of multiple numbers of active DNAzymeMB molecules from a single target molecule and gives a detection limit down to 1 pM, a value that is nearly 3 or 5 orders of magnitude lower than those of previously reported DNAzyme molecular beacon-based DNA detection methods.     

BAMO-AMMO三嵌段共聚物的间接法合成及表征

以3,3′-双溴甲基环氧丁烷(BBMO)和3-溴甲基-3’-甲基环氧丁烷(BrMMO)为单体,通过活性顺序聚合法合成了BBMO-BrMMO三嵌段共聚物,并采用相转移催化法实现了3,3′-双叠氮甲基环氧丁烷-3-叠氮甲基-3′-甲基环氧丁烷(BAMO-AMMO)三嵌段共聚物的间接法合成。探讨了溶剂的选择及叠氮化反应时间的影响:选用极性和溶度参数接近的异亚丙基丙酮为溶剂,24 h后叠氮化率为99.97%。通过核磁共振(13C-NMR)和凝胶渗透色谱(GPC)对所得产物进行了表征,结果表明,共聚物组成接近于1∶1,分子量7053,分子量分布1.47。     

聚吡咯/聚砜复合膜修饰电极的制备及其对对苯二酚的电化学催化性能

采用循环伏安法电化学聚合制备了聚吡咯(PPY)/聚砜(PSF)复合膜修饰电极.结果发现:复合膜的正面(与工作电极接触的一面)是黑色的;而反面(与溶液接触的一面)是白色的.复合膜的表面形态和化学组分分别用SEM和FTIR表征,用电化学循环伏安法对PPY/PSF复合膜修饰电极的电化学催化性能进行了研究.实验结果表明:所得复合膜修饰电极电化学可逆性好并且对对苯二酚有显著的催化效果,其氧化峰电流在5～30mM的范围内与对苯二酚的浓度呈线性关系,表明该复合膜修饰电极在对苯二酚H2Q的监测方面将有潜在的用途.     

Electrocatalytic activity of Pt nanoparticles supported on novel functionalized reduced graphene oxide-chitosan for methanol electrooxidation

Here, graphene oxide (GO) was synthesized by a modified Hummers’ method and was functionalized with 1,1′-dimethyl-4,4′-bipyridinium dichloride (MV) accompanied by chitosan (CH) to prepare a novel MV-RGO-CH support. Pt/MV-RGO-CH catalyst was prepared by immobilization of the Pt nanoparticles on MV-RGO-CH support. The microstructure and morphology of the prepared catalyst was characterized by transmission electron microscopy and X-ray powder diffraction analysis. The electrocatalytic activity of Pt/MV-RGO-CH catalyst was investigated for methanol electrooxidation through cyclic voltammetry (CV), CO_ads stripping voltammetry, chronoamperometry, and electrochemical impedance spectroscopy (EIS) techniques. The effects of some experimental factors for methanol electrooxidation such as methanol concentration, scan rate and temperature were studied at the prepared catalyst. Durability of the catalyst was also investigated. Comparing the catalytic activity of the Pt/MV-RGO-CH nanocatalyst with Pt/CH and Pt/MV-RGO catalysts indicated that Pt/MV-RGO-CH has a very good catalytic activity for methanol electrooxidation.     

Nitrogen-doped graphene hydrogel-supported NiPt-CeO x nanocomposites and their superior catalysis for hydrogen generation from hydrazine at room temperature

The safe and efficient storage and release of hydrogen is one of the key technological challenges for the fuel cell-based hydrogen economy.Hydrazine monohydrate has attracted considerable attention as a safe and convent chemical hydrogen-storage material.Herein,we report the facile synthesis of NiPt-CeOx nanocomposites supported by three-dimensional nitrogen-doped graphene hydrogels (NGHs) via a simple one-step co-reduction synthesis method.These catalysts were composition-dependent for hydrogen generation from an alkaline solution of hydrazine.(Ni5Pt5)1-(CeOx)0.3/NGH exhibited the highest catalytic activity,with 100％ hydrogen selectivity and turnover frequencies of 408 h-1 at 298 K and 3,064 h-1 at 323 K.These superior catalytic performances are attributed to the electronic structure of the NiPt centers,which was modified by the electron interaction between NiPt and CeOx and the strong metal-support interaction between NiPt-CeOx and the NGH.