The duration of viral suppression during protease inhibitor therapy for HIV-1 infection is predicted by plasma HIV-1 RNA at the nadir

OBJECTIVE: To determine markers that are associated with the durability of virologic response to therapy with HIV protease inhibitors in HIV-infected individuals. DESIGN: This study encompassed two retrospective analyses of the duration of virologic response to protease inhibitor therapy. The first analysis included 29 patients receiving either monotherapy or combination therapy with the protease inhibitor ritonavir whose plasma HIV RNA levels rebounded from the point of greatest decline with mutations associated with resistance to ritonavir. The second analysis included a cohort of 102 patients who initially responded to randomized treatment with either monotherapy with ritonavir or combination therapy with ritonavir and zidovudine. METHODS: Durability of response was defined as the time from the initiation of therapy to the point at which plasma HIV RNA displayed a sustained increase of at least 0.6 log10 copies/ml from the nadir value. In the first analysis, durability of response was analyzed with respect to baseline HIV RNA, HIV RNA at the nadir, and the drop in HIV RNA from baseline to the nadir. In the second analysis, time to rebound was examined using Kaplan-Meier analysis, stratifying by either baseline HIV RNA or HIV RNA at the nadir. RESULTS: In both analyses, the durability of response was not highly associated with either baseline RNA or the magnitude of RNA decline from baseline. Instead, a strong relationship was observed between the durability of response and the nadir plasma HIV-1 RNA value (P < 0.01). The nadir in viral load was generally reached after 12 weeks of randomized therapy. CONCLUSIONS: Viral RNA determinations at intermediate timepoints may be prognostic of impending virologic failure of protease inhibitor therapy. Therapeutic strategies that allow intensification of initial antiretroviral regimens in the subset of patients with incomplete virological response before the emergence of high level resistance should be investigated.     

Biosolids accumulation and biodegradation of domestic wastewater treatment plant sludge by developed liquid state bioconversion process using a batch fermenter

The biosolids accumulation and biodegradation of domestic wastewater treatment plant (DWTP) sludge by filamentous fungi have been investigated in a batch fermenter. The filamentous fungi Aspergillus niger and Penicillium corylophilum isolated from wastewater and DWTP sludge was used to evaluate the treatment performance. The optimized mixed inoculum (A. niger and P. corylophilum) and developed process conditions (co-substrate and its concentration, temperature, initial pH, inoculum size, and aeration and agitation rate) were incorporated to accelerate the DWTP sludge treatment process. The results showed that microbial treatment of higher strength of DWTP sludge (4% w/w of TSS) was highly influenced by the liquid state bioconversion (LSB) process. In developed bioconversion processes, 93.8 g/kg of biosolids was enriched with fungal biomass protein of 30 g/kg. Enrichment of nutrients such as nitrogen (N), phosphorous (P), potassium (K) in biosolids was recorded in 6.2% (w/w), 3.1% (w/w) and 0.15% (w/w) from its initial values of 4.8% (w/w), 2.0% (w/w) and 0.08% (w/w) respectively after 10 days of fungal treatment. The biodegradation results revealed that 98.8% of TSS, 98.2% of TDS, 97.3% of turbidity, 80.2% of soluble protein, 98.8% of reducing sugar and 92.7% of COD in treated DWTP sludge supernatant were removed after 8 days of microbial treatment. The specific resistance to filtration (SRF) in treated sludge (1.4x10(12) m/kg) was decreased tremendously by the microbial treatment of DWTP sludge after 6 days of fermentation compared to untreated sample (85x10(12) m/kg).     

Single-Mixture Audio Source Separation by Subspace Decomposition of Hilbert Spectrum

A novel technique is developed to separate the audio sources from a single mixture. The method is based on decomposing the Hilbert spectrum (HS) of the mixed signal into independent source subspaces. Hilbert transform combined with empirical mode decomposition (EMD) constitutes HS, which is a fine-resolution time-frequency representation of a nonstationary signal. The EMD represents any time-domain signal as the sum of a finite set of oscillatory components called intrinsic mode functions (IMFs). After computing the spectral projections between the mixed signal and the individual IMF components, the projection vectors are used to derive a set of spectral independent bases by applying principal component analysis (PCA) and independent component analysis (ICA). A k-means clustering algorithm based on Kulback-Leibler divergence (KLd) is introduced to group the independent basis vectors into the number of component sources inside the mixture. The HS of the mixed signal is projected onto the space spanned by each group of basis vectors yielding the independent source subspaces. The time-domain source signals are reconstructed by applying the inverse transformation. Experimental results show that the proposed algorithm performs separation of speech and interfering sound from a single mixture     

Bridging fault detection in cluster based FPGA by using Muller C element

In this work, we propose a testing technique for detecting single stuck-at and bridging faults in the interconnects of the cluster based FPGA. The presence of the feedback-bridging fault, race and glitch poses major challenges to the detection of the fault. The feedback bridging fault has a high ingredient of delay dependent properties due to the variation of the feedback path delay. So we have exploited the concept of asynchronous logic in order to detect the fault. We configure the block under test (BUT) with a pseudo delay independent asynchronous element known as Muller C element. The novelty of this scheme lies in the fact that, it can detect the stuck-at and bridging fault including the feedback bridging fault by a single test configuration. The Xilinx Jbits 3.0 API (Application Program Interface) is used to implement the BISTER (Built-in-self-tester) structure in the FPGA. In comparison to the traditional FPGA development tool (ISE), ‘Jbits’ gives more controllability for which the partial run time reconfiguration of the FPGA is easily achieved.     

Early Stages of Calcium Phosphate Formation on Bioactive Borosilicate Glass in Aqueous Phosphate Solution

The conversion of bioactive glass to a calcium phosphate material, typically hydroxyapatite (HA), by solution–precipitation reactions in aqueous phosphate solution, has been commonly reported. This paper describes the structural and compositional characteristics of the calcium phosphate material formed during the early-stage conversion (<5 h) of a borosilicate glass (designated H12) in aqueous phosphate solution. Disks of H12 glass were reacted with 0.25 M K₂HPO₄ solution with a starting pH=7.0 at 37°C. The structure and composition of the product layer were characterized using thin film X-ray diffraction, scanning electron microscopy, and Fourier transform infrared reflectance spectroscopy. For reaction times <5 h, the results indicated the formation of brushite (CaHPO₄·2H₂O) with coarse, plate-like crystals. In comparison, the formation of HA with small needle-like crystals was found at later times. This early-stage formation of brushite has not been reported in previous studies of converting bioactive silicate and borate glasses in aqueous phosphate solution.     

Effects of various process parameters on struvite precipitation kinetics and subsequent determination of rate constants.

In this paper, struvite (MgNH(4)PO(4).6H(2)O) precipitation kinetics were studied with different operating conditions (varying supersaturation, pH, Mg:P ratio, degree of mixing and seeding conditions) and relevant rate constants were determined by fitting a slightly modified first-order kinetic model to the experimental data obtained. The rate of change of ortho-P concentration in the bulk solutions increases with increasing supersaturation ratio. The estimated rate constants are 2.034, 1.716 and 0.690 hr(-1) for the supersaturation ratio of 9.64, 4.83, and 2.44, respectively. Kinetic parameters were also evaluated for the Mg:P ratio between the ranges of 1.0 and 1.6, indicating higher phosphorus removal efficiency with increasing Mg:P ratio. The rate constants were found to be 0.942, 2.034 and 2.712 hr(-1) for Mg:P ratios of 1.0, 1.3 and 1.6, respectively. The experimental observations for kinetic study of struvite precipitation with different stirrer speeds clearly show that the mixing intensity used had little effect on the intrinsic rate constants. K values found to be 2.034 and 1.902 h(-1) for 100 and 70 rpm, respectively. Seeding, with 250-500 microm of seed crystals during the struvite precipitation kinetics test, was found to have very little effect on the ortho-P removal.     

Wrapping carbon nanotubes by biopolymer chains: Role of nanointerfaces in detection of vapors in conductive polymer composite transducers

Chitosan (CS) and hydrophobic‐modified chitosan (HM‐CS) chains were wrapped onto multiwalled carbon nanotubes (MWNTs) and introduced to polyvinyl alcohol (PVA) matrices as nanohybrid conductive polymer composites (CPCs) for detection of polar vapors. The effect of grafted alkyl groups on polarity of CS chains were studied by quantum mechanics (QM). The designed composites were applied as sensitive layers to clarify the response mechanism in CPCs gas sensors. It was realized that the wrapped biopolymers intensely influenced the sensitivity of the composites. Experiment results specified that the nature of biomacromolecules and their interactions with vapor molecules affects the resistance change in CPCs. The higher interaction of CS with polar vapor molecules caused more plasticization of polymer segments in the MWNTs connections. Such phenomenon enhanced the resistance change in the presence of analytes. Moreover, it was inferred that the semiconductor character of MWNTs has an important effect in the final signals. The more polar structure of CS in comparison with HM‐CS enhanced the adsorption of vapor molecules on the surface of MWNTs, and the electron donor analytes decreased the conductivity of p‐type MWNTs increasing the final responses. The presented results corroborate that the performance of CPCs gas sensors could be finely tuned through manipulation of the nanointerfaces. POLYM. COMPOS., 37:2803–2810, 2016. © 2015 Society of Plastics Engineers     

Brefeldin A inhibits cell-free, de novo synthesis of poliovirus

Brefeldin A (BFA), an inhibitor of intracellular vesicle-dependent secretory transport, is a potent inhibitor of poliovirus RNA replication in infected cells. We have determined that the unknown mechanism of BFA inhibition of replication is reproduced in the cell-free poliovirus translation, replication, and encapsidation system. Furthermore, we provide evidence suggesting that the cellular mechanism targeted by BFA, the GTP-dependent synthesis of secretory transport vesicles, may be involved in viral RNA replication in the system via a soluble cellular GTP-binding and -hydrolyzing activity. This activity is related to the ARF (ADP-ribosylation factor) family of GTP-binding proteins. ARFs are required for the formation of several classes of secretory vesicles, and some family members are indirectly inactivated by BFA. Peptides that function as competitive inhibitors of ARF activity in cell-free transport systems also inhibit poliovirus RNA replication, and this inhibitory effect can be countered by the addition of exogenous ARF. We suggest that BFA inhibition of replication is diagnostic of a requirement for ARF activity in the cell-free system.