Failure pressure evaluation of the containment building of a large dry nuclear power plant

The evaluation of the failure pressure of the containment building of a large dry PWR-W three loops nuclear power plant, based on computer numerical simulation, is described in this paper. The proposed method considers fully three-dimensional finite element models in order to take into account the effect of the most significant structural characteristics (presence of three buttresses, penetrations, additional reinforcement around the penetrations, etc.), the lack of symmetry of the forces generated by the prestressing system, as well as the nonlinear behaviour of the materials and the sensitivity of the results to uncertainties associated with several parameters. The computational model is completely described, including the constitutive equations for the concrete, the reinforcing steel and prestressing tendons, the spatial discretization—isoparametric elements including the reinforcement are used. The structural models and the analyses performed for their calibration are also described. The influence on the failure pressure of incorporating the foundation slab in the structural model, and the influence of the thermal effects, are discussed. One of the conclusions of the numerical study is that the failure process can be appropriately simulated by means of a structural model which does not include either the foundation slab or the thermal effects. Finally, results of a probabilistic simulation of the failure pressure are given.     

Microplastic and other anthropogenic microparticles in water and sediments of Lake Simcoe

Microplastics (plastic particles <5 mm in size) have been reported in ecosystems worldwide and have been shown to cause adverse negative impacts on organisms. This study provides the first report of microplastics and other anthropogenic microparticles in the surface waters and sediments of Lake Simcoe in Ontario, Canada, a popular recreational and fishing lake. Surface waters (low volume grabs and manta trawls) and sediments were sampled from eight sites to determine microparticle abundances and character (size, morphology, material identity). Concentrations ranged from 0 to 0.7 particles/L in surface water grab samples, 0.4–1.3 particles/m³ in manta trawl samples, and 8.3–1070 particles/kg in sediment samples. Spectroscopic analysis confirmed that 72% of particles were anthropogenic, with 64% unambiguously identified as microplastics. However, confirmed microplastic concentrations were approximately 6–7 times lower than unadjusted counts in sediments, demonstrating the importance of verifying and adjusting reported values. Fibers were only quantified and characterized in surface water grab samples and sediments, and were the most common morphology, accounting for 82% and 89% of anthropogenic particles, respectively. Fragments were most common in manta trawl samples (75%, excluding fibers) and consisted predominantly of polyethylene (41%) and polypropylene (22%). The influence of proximity to urban centers and prevailing winds on the distribution of microplastics was apparent in surface water manta trawls. Microplastics and other anthropogenic microparticles are present in Lake Simcoe but at lower abundances than at locations impacted by larger population centers in other large freshwater lakes such as Lakes Ontario and Erie of the Great Lakes.     

Facilitating the learning process in parallel computing by using instant messaging

Parallel Programming skills may require a long time to acquire. “Think in parallel” is a skill that requires time, effort, and experience. In this work, we propose to facilitate the students’ learning process in parallel programming by using instant messaging. Our aim was to find out whether students’ interaction through instant messaging tools is beneficial for the learning process. In order to do so, we asked several students of an HPC course of the Master’s degree in Computer Science of the University of León to develop a specific parallel application, each of them using a different application program interface: OpenMP, MPI, CUDA, or OpenCL. Even though the used APIs are different, there are common points in the design process. We encouraged students to interact with each other by using Gitter, an instant messaging tool for GitHub users. Our analysis of the communications and results demonstrate that the direct interaction of students through the Gitter tool has a positive impact on the learning process.

     

Integrating supercomputing clusters into education: a case study in biotechnology

The Journal of Supercomputing - The integration of a Supercomputer in the educational process improves student’s technological skills. The aim of the paper is to study the interaction between...     

A neuron membrane mesh representation for visualization of electrophysiological simulations

We present a process to automatically generate three-dimensional mesh representations of the complex, arborized cell membrane surface of cortical neurons (the principal information processing cells of the brain) from nonuniform morphological measurements. Starting from manually sampled morphological points (3D points and diameters) from neurons in a brain slice preparation, we construct a polygonal mesh representation that realistically represents the continuous membrane surface, closely matching the original experimental data. A mapping between the original morphological points and the newly generated mesh enables simulations of electrophysiolgical activity to be visualized on this new membrane representation. We compare the new mesh representation with the state of the art and present a series of use cases and applications of this technique to visualize simulations of single neurons and networks of multiple neurons.     

Run-time generation of partial FPGA configurations

This paper presents and evaluates a method of generating partial bitstreams at run-time for dynamic reconfiguration of sections of an FPGA. The method is intended for use in adaptive embedded systems that employ run-time reconfiguration to achieve high flexibility and performance. The proposed approach combines partial bitstreams of coarse-grained components to produce a new partial bitstream implementing a given circuit netlist. Topological sorting of the netlist is used to determine the initial positions of individual components, whose placement is then improved by simulated annealing. Connection routing is done by a breadth-first search of the reconfigurable area based on a simplified resource model of the reconfigurable fabric. The desired partial bitstream is constructed by merging together the default bitstream of the reconfigurable area, the relocated partial bitstreams of the components, and the configurations of the switch matrices used for routing. The approach is embodied in a code library that applications can use to create new bitstreams at run-time. For the members of a set of 29 benchmarks (both synthetic and application-derived) having between five and 41 components, the complete process of bitstream generation takes between 8 s and 35 s when running on an embedded PowerPC 405 microprocessor clocked at 300 MHz.     

The GPU on the simulation of cellular computing models

Membrane Computing is a discipline aiming to abstract formal computing models, called membrane systems or P systems, from the structure and functioning of the living cells as well as from the cooperation of cells in tissues, organs, and other higher order structures. This framework provides polynomial time solutions to NP-complete problems by trading space for time, and whose efficient simulation poses challenges in three different aspects: an intrinsic massively parallelism of P systems, an exponential computational workspace, and a non-intensive floating point nature. In this paper, we analyze the simulation of a family of recognizer P systems with active membranes that solves the Satisfiability problem in linear time on different instances of Graphics Processing Units (GPUs). For an efficient handling of the exponential workspace created by the P systems computation, we enable different data policies to increase memory bandwidth and exploit data locality through tiling and dynamic queues. Parallelism inherent to the target P system is also managed to demonstrate that GPUs offer a valid alternative for high-performance computing at a considerably lower cost. Furthermore, scalability is demonstrated on the way to the largest problem size we were able to run, and considering the new hardware generation from Nvidia, Fermi, for a total speed-up exceeding four orders of magnitude when running our simulations on the Tesla S2050 server.     

Optimal configuration of Energy-Efficient Ethernet

The IEEE 802.3az standard provides a new low power mode that Ethernet network interfaces can use to save energy when there is no traffic to transmit. Simultaneously with the final standard approval, several algorithms were proposed to govern the physical interface state transition between the normal active mode and the new low power mode. In fact, the standard leaves this sleeping algorithm unspecified to spur competition among different vendors and achieve the greatest energy savings. In this paper, we try to bring some light to the most well known sleeping algorithms, providing mathematical models for the expected energy savings and the average packet delay inflicted on outgoing traffic. We will then use the models to derive optimum configuration parameters for them under given efficiency constraints.     

A “Golden Age” for the discovery of new antileishmanial agents: Current status of leishmanicidal gold complexes and prospective targets beyond the trypanothione system

Leishmaniasis is one of the most neglected diseases worldwide and is considered a serious public health issue. The current therapeutic options have several disadvantages that make the search for new therapeutics urgent. Gold compounds are emerging as promising candidates based on encouraging in vitro and limited in vivo results for several Au^I and Au^III complexes. The antiparasitic mechanisms of these molecules remain only partially understood. However, a few studies have proposed the trypanothione redox system as a target, similar to the mammalian thioredoxin system, pointed out as the main target for several gold compounds with significant antitumor activity. In this review, we present the current status of the investigation and design of gold compounds directed at treating leishmaniasis. In addition, we explore potential targets in Leishmania parasites beyond the trypanothione system, taking into account previous studies and structure modulation performed for gold-based compounds.