Histone Methylation Marks on Circulating Nucleosomes as Novel Blood-Based Biomarker in Colorectal Cancer

Circulating nucleic acids (CNAs) are under investigation as a liquid biopsy in cancer as potential non-invasive biomarkers, as stable structure in circulation nucleosomes could be valuable sources for detection of cancer-specific alterations in histone modifications. Our interest is in histone methylation marks with a focus on colorectal cancer, one of the leading cancers respective the incidence and mortality. Our previous work included the analysis of trimethylations of lysine 9 on histone 3 (H3K9me3) and of lysine 20 on histone 4 (H4K20me3) by chromatin immuno- precipitation-related PCR in circulating nucleosomes. Here we asked whether global immunologic measurement of histone marks in circulation could be a suitable approach to show their potential as biomarkers. In addition to H3K9me3 and H4K20me3 we also measured H3K27me3 in plasma samples from CRC patients (n = 63) and cancer free individuals (n = 40) by ELISA-based methylation assays. Our results show that of three marks, the amounts of H3K27me3 (p = 0.04) and H4K20me3 (p < 0.001) were significantly lower in CRC patients than in healthy controls. For H3K9me3 similar amounts were measured in both groups. Areas under the curve (AUC) in receiver operating characteristic (ROC) curves indicating the power of CRC detection were 0.620 for H3K27me3, 0.715 for H4K20me3 and 0.769 for the combination of both markers. In conclusion, findings of this preliminary study reveal the potential of blood-based detection of CRC by quantification of histone methylation marks and the additive effect of the marker combination.     

Potential of in-field and low temperature drying for reducing chlorophyll contents in canola (Brassica napus L)

The presence of green seeds in canola arises primarily from the common practice of swathing the crop prematurely in order to hasten the harvesting process and reduce the shattering losses. The purpose of this study was to determine the effects of plant maturity, swathing and duration of swathing on moisture and chlorophyll contents of canola seeds (Brassica napus L cv Westar), and to determine the effect of canola conditioning with air at 25·C and 90% RH on chlorophyll content. A standing crop of canola with 50% to 10% (w/w) seed moisture content was sampled at regular intervals in two consecutive harvest years (1989 and 1990). Canola was also swathed at three different stages of maturity, and seeds were checked for chlorophyll at 2-3 day intervals and compared with chlorophyll contents of seed from standing crop. Samples were conditioned in a thin layer with air at 25·C and 90% RH for 24 h, and chlorophyll was determined before and after conditioning. The chlorophyll of seeds decreased exponentially with a decrease in moisture content. Conditioning canola seeds decreased chlorophyll content by an average of 16% (SD = ± 12%).     

Natural convective flow between an array of vertical cylinders

The natural-convectioe flow of a viscous and heat-conducting fluid in systems of cylinders, arranged vertically in regular patterns, is studied. The aim of the study is to determine the conditions of stability of the fluid when heated from below and cooled from above. In particular, the influence of geometry and thermal properties of the system on the free stationary convection are studied. A new way of calculating the free convection threshold is proposed. The final results are analytical formulas for determining the critical Rayleigh numbers for the studied forms of flow and graphs, showing the dependency of these numbers on the geometrical parameters of arrays.     

Editorial

Ohne Zusammenfassung     

Numerical Study of a Modified Time-Stepping θ-Scheme for Incompressible Flow Simulations

In [Turek (1996). Int. J. Numer. Meth. Fluids 22, 987–1011], we had performed numerical comparisons for different time stepping schemes for the incompressible Navier–Stokes equations. In this paper, we present the numerical analysis in the context of the Navier–Stokes equations for a modified time-stepping θ-scheme which has been recently proposed by Glowinski [Glowinski (2003). In: Ciarlet, P. G., and Lions, J. L. (eds.), Handbook of Numerical Analysis, Vol. IX, North-Holland, Amsterdam, pp. 3–1176]. Like the well-known classical Fractional-Step-θ-scheme which had been introduced by Glowinski [Glowinski (1985). In Murman, E. M. and Abarbanel, S. S. (eds.), Progress and Supercomputing in Computational Fluid Dynamics, Birkh?user, Boston MA; Bristeau et al. (1987). Comput. Phys. Rep. 6, 73–187], too, and which is still one of the most popular time stepping schemes, with or without operator splitting techniques, this new scheme consists of 3 substeps with nonequidistant substepping to build one macro time step. However, in contrast to the Fractional-Step-θ-scheme, the second substep can be formulated as an extrapolation step for previously computed data only, and the two remaining substeps look like a Backward Euler step so that no expensive operator evaluations for the right hand side vector with older solutions, as for instance in the Crank–Nicolson scheme, have to be performed. This modified scheme is implicit, strongly A-stable and second order accurate, too, which promises some advantageous behavior, particularly in implicit CFD simulations for the nonstationary Navier–Stokes equations. Representative numerical results, based on the software package FEATFLOW [Turek (2000). FEATFLOW Finite element software for the incompressible Navier–Stokes equations: User Manual, Release 1.2, University of Dortmund] are obtained for typical flow problems with benchmark character which provide a fair rating of the solution schemes, particularly in long time simulations.Dedicated to David Gottlieb on the occasion of his 60th anniversary