Proteins as Possible Targets for Cytotoxic trans‐Platinum(II) Complexes with Aliphatic Amine Ligands: Further Exceptions to the DNA Paradigm

The reactivity of three cytotoxic trans‐Pt^II complexes bearing aliphatic amine ligands, with transferrin and single‐stranded oligonucleotides as DNA models, was investigated by ESI‐MS and the results obtained are discussed in comparison with cisplatin. Tandem MS studies provided additional information on the preferential Pt binding sites. To determine whether trans‐Pt^II complexes can migrate from a peptide to an oligonucleotide, transfer experiments were also performed using ESI‐MS, and competitive binding of the trans‐Pt^II complexes toward a model peptide and different oligonucleotides was also investigated. Significant differences in the reactivity of the trans complexes with respect to cisplatin were observed. In general, adduct formation with the selected peptide is favored for the trans compounds, whereas cisplatin shows a preference for oligonucleotides, especially if adjacent G–G residues are present. The results are discussed in relation to the possible mechanism of action of the trans‐Pt^II complexes.     

Thermomechanical properties of bitumen modified with crumb tire rubber and polymeric additives

In this paper, the influence of some additives on the rheological and technological properties of crumb rubber modified binders has been studied. The research has been mainly focused on the degree of bitumen modification, measured as the improvement of the mechanical properties, produced by the additives used, and the storage stability of these binders at high temperature. The experimental results obtained reveal that all the polymeric additives used yield an improvement in both rheological and technological properties of the binder. The storage instability of these binders has been associated to sedimentation processes of insoluble CR particles that strongly influence the mechanical properties of the binder. The additives and processing conditions selected in this study do not completely prevent problems associated with the poor stability of CRMBs during storage at high temperature. Nevertheless, the use of polyoctenamer, FT-wax or SBS-containing additives improves CRMB stability. In this sense, similar loss tangent values were found before and after hot storage of these binders.     

Comparative exergy analysis of direct alcohol fuel cells using fuel mixtures

Within the last years there has been increasing interest in direct liquid fuel cells as power sources for portable devices and, in the future, power plants for electric vehicles and other transport media as ships will join those applications. Methanol is considerably more convenient and easy to use than gaseous hydrogen and a considerable work is devoted to the development of direct methanol fuel cells. But ethanol has much lower toxicity and from an ecological viewpoint ethanol is exceptional among all other types of fuel as is the only chemical fuel in renewable supply. The aim of this study is to investigate the possibility of using direct alcohol fuel cells fed with alcohol mixtures. For this purpose, a comparative exergy analysis of a direct alcohol fuel cell fed with alcohol mixtures against the same fuel cell fed with single alcohols is performed. The exergetic efficiency and the exergy loss and destruction are calculated and compared in each case. When alcohol mixtures are fed to the fuel cell, the contribution of each fuel to the fuel cell performance is weighted attending to their relative proportion in the aqueous solution. The optimum alcohol composition for methanol/ethanol mixtures has been determined.     

LZgrep: a Boyer–Moore string matching tool for Ziv–Lempel compressed text

We present a Boyer–Moore (BM) approach to string matching over LZ78 and LZW compressed text. The idea is to search the text directly in compressed form instead of decompressing and then searching it. We modify the BM approach so as to skip text using the characters explicitly represented in the LZ78/LZW formats, modifying the basic technique where the algorithm can choose which characters to inspect. We present and compare several solutions for single and multipattern searches. We show that our algorithms obtain speedups of up to 50% compared to the simple decompress‐then‐search approach. Finally, we present a public tool, LZgrep, which uses our algorithms to offer grep‐like capabilities directly searching files compressed using Unix's Compress, a LZW compressor. LZgrep can also search files compressed with Unix gzip, using new decompress‐then‐search techniques we develop, which are faster than the current tools. This way, users can always keep their files in compressed form and still search them, uncompressing only when they want to see them. Copyright © 2005 John Wiley & Sons, Ltd.     

Searching in metric spaces by spatial approximation

We propose a new data structure to search in metric spaces. A metric space is formed by a collection of objects and a distance function defined among them which satisfies the triangle inequality. The goal is, given a set of objects and a query, retrieve those objects close enough to the query. The complexity measure is the number of distances computed to achieve this goal. Our data structure, called sa-tree (“spatial approximation tree”), is based on approaching the searched objects spatially, that is, getting closer and closer to them, rather than the classic divide-and-conquer approach of other data structures. We analyze our method and show that the number of distance evaluations to search among n objects is sublinear. We show experimentally that the sa-tree is the best existing technique when the metric space is hard to search or the query has low selectivity. These are the most important unsolved cases in real applications. As a practical advantage, our data structure is one of the few that does not need to tune parameters, which makes it appealing for use by non-experts. Edited by R. Sacks-Davis Received: 17 April 2001 / Accepted: 24 January 2002 / Published online: 14 May 2002     

Nucleation in Dilute 3He-4He Liquid Mixtures at Low Temperatures

We present a study of phase separation from supersaturated ³ He- ⁴ He liquid mixtures at low temperatures addressing both the degree of critical supersaturation x_cr and the thermal-to-quantum crossover temperature T* for the nucleation process. Two different nucleation seeds are investigated, namely ³ He droplets and ⁴ He vortex lines with cores filled with ³ He. We have found that the experimental T* is reproduced when we consider that nucleation proceeds from ³ He droplets, whereas x_cr is reproduced when we consider ⁴ He vortex lines filled with ³ He. However, neither nucleation configuration is able to simultaneously reproduce the current experimental information on x_cr and T*.     

Dominant effects of the bcr-abl oncogene on Drosophila morphogenesis

The Ras protein and its homolog, Rap1A, have an identical "effector region" (residues 32-40) preceded by Asp30-Glu31 and Glu30-Lys31, respectively. In the complex of the "Ras-like" E30D/K31E mutant Rap1A with the Ras-binding domain (RBD), residues 51-131 of Raf-1, Glu31 in Rap1A forms a tight salt bridge with Lys84 in Raf-1. However, we have recently found that Raf-1 RBD binding of Ras is indeed reduced by the E31K mutation, but is not affected by the E31A mutation. Here, the "Rap1A-like" D30E/E31K mutant of Ras was prepared and shown to bind the Raf-1 RBD less strongly than wild-type Ras, but slightly more tightly than the E31K mutant. The backbone 1H, 13C, and 15N magnetic resonances of the Raf-1 RBD were assigned in complexes with the wild-type and D30E/E31K mutant Ras proteins in the guanosine 5'-O-(beta,gamma-imidotriphosphate)-bound form. The Lys84 residue in the Raf-1 RBD exhibited a large change in chemical shift upon binding wild-type Ras, suggesting that Lys84 interacts with wild-type Ras. The D30E/E31K mutant of Ras caused nearly the same perturbations in Raf-1 chemical shifts, including that of Lys84. We hypothesized that Glu31 in Ras may not be the major salt bridge partner of Lys84 in Raf-1. A molecular dynamics simulation of a model structure of the Raf-1 RBD.Ras.GTP complex suggested that Lys84 in Raf-1 might instead form a tight salt bridge with Asp33 in Ras. Consistent with this, the D33A mutation in Ras greatly reduced its Raf-I RBD binding activity. We conclude that the major salt bridge partner of Lys84 in Raf-1 may be Asp33 in Ras.     

Direct sequencing of neuropeptides in biological tissue by MALDI-PSD mass spectrometry

Dissected tissue pieces of the pituitary pars intermedia from the amphibian Xenopus laevis was directly subjected to matrix-assisted laser desorption/ionization (MALDI) mass analysis. The obtained MALDI peptide profile revealed both previously known and unexpected processing products of the proopiomelanocortin gene. Mass spectrometric peptide sequencing of a few of these neuropeptides was performed by employing MALDI combined with postsource decay (PSD) fragment ion mass analysis. The potential of MALDI-PSD for sequence analysis of peptides directly from unfractionated tissue samples was examined for the first time for the known desacetyl-alpha-MSH-NH2 and the presumed vasotocin neuropeptide. In addition, the sequence of an unknown peptide which was present in the pars intermedia tissue sample at mass 1392.7 u was determined. The MALDI-PSD mass spectrum of precursor ion 1392.7 u contained sufficient structural information to uniquely identify the sequence by searching protein sequence databases. The determined amino acid sequence corresponds to the vasotocin peptide with a C-terminal extension of Gly-Lys-Arg ("vasotocinyl-GKR"), indicating incomplete processing of the vasotocin precursor protein in the pituitary pars intermediate of X. laevis. Both vasotocin and vasotocinyl-GKR are nonlinear peptides containing a disulfide (S-S) bridge between two cysteine residues. Interpretation of the spectra of these two peptides reveals three different forms of characteristic fragment ions of the cysteine side chain: peptide-CH2-SH (regular mass of Cys-containing fragment ions), peptide-CH2-S-SH (regular mass + 32 u) and peptide = CH2 (regular mass -34 u) due to cleavage on either side of the sulfur atoms.     

Optimal selection and preparation of fresh frozen corticocancellous allografts for cervical interbody spinal fusion

STUDY DESIGN: Iliac crest corticocancellous allografts for anterior interbody fusion were harvested from six cadavers. The grafts were cut sequentially from left and right crests and randomly assigned to tricortical or bicortical preparations. Their compression strengths then were determined and compared by matched pair analysis. OBJECTIVES: To quantify the failure strength of the grafts from different iliac locations and determine the optimal type of preparation of the grafts for anterior interbody fusion. SUMMARY OF BACKGROUND DATA: Iliac crest corticocancellous autografts and allografts commonly are used for interbody cervical fusions. However, graft strengths for specific sites have not been determined fully. METHODS: Six paired, fresh frozen, iliac crests were sectioned using a customized miter box into multiple 1-cm-thick grafts 1.5 cm in depth to simulate cervical interbody grafts. The left and right sides of each pair were randomly assigned to tricortical and bicortical preparations. The samples were tested by applying a compressive load to failure using a specialized fixture to simulate vertebral body loading. RESULTS: The grafts closer to the anterosuperior iliac spine had significantly higher failure loads and failure strengths than those closer to the posterosuperior iliac spine. The strengths of the bicortical grafts were 72 +/- 14% of the strengths of the tricortical grafts (P < 0.001). CONCLUSIONS: Anterior iliac crest grafts were stronger in compression, even after removal of one cortical surface, than posterior iliac crest grafts.