Energy Metabolites as Biomarkers in Ischemic and Dilated Cardiomyopathy

With more than 25 million people affected, heart failure (HF) is a global threat. As energy production pathways are known to play a pivotal role in HF, we sought here to identify key metabolic changes in ischemic- and non-ischemic HF by using a multi-OMICS approach. Serum metabolites and mRNAseq and epigenetic DNA methylation profiles were analyzed from blood and left ventricular heart biopsy specimens of the same individuals. In total we collected serum from n = 82 patients with Dilated Cardiomyopathy (DCM) and n = 51 controls in the screening stage. We identified several metabolites involved in glycolysis and citric acid cycle to be elevated up to 5.7-fold in DCM (p = 1.7 × 10⁻⁶). Interestingly, cardiac mRNA and epigenetic changes of genes encoding rate-limiting enzymes of these pathways could also be found and validated in our second stage of metabolite assessment in n = 52 DCM, n = 39 ischemic HF and n = 57 controls. In conclusion, we identified a new set of metabolomic biomarkers for HF. We were able to identify underlying biological cascades that potentially represent suitable intervention targets.     

High solids content emulsions. III. Synthesis of concentrated latices by classic emulsion polymerization

Two different methods of producing bi‐ and trimodal latices of a mixture of methyl methacrylate, butyl acrylate, and small amounts of acrylic acid were tested. It is shown that a combination of concentrating blends of seed particles by semibatch reaction, followed by a nucleation of small particles plus a second semibatch phase allowed us to obtain stable latices with solids contents over 65% and viscosities of below 2500 mPa s^?1 with little coagulum formation. The key parameter in determining latex stability, coagulum formation, and viscosity appears to be the the particle size distribution, and especially its modification attributed to secondary nucleation. Because it is not possible to eliminate water‐soluble monomers from the polymerization recipe, secondary (homogeneous) nucleation must be minimized by careful addition of the free‐radical initiator and choice of monomer feed flow rates. The nucleation of the third population in the trimodal latices is best accomplished with a mixed surfactant system because renucleation by anionic surfactant alone leads to detrimental changes in the particle size distribution (PSD) resulting from excessive flocculation of particles. In addition, it was found that the viscosity of the final products was not sensitive to small changes in the ionic strength of the latex, although neutralization to a pH of 6 effectively doubles the final latex viscosity. © 2002 Wiley Periodicals, Inc. J Appl Polym Sci 84: 1916–1934, 2002; DOI 10.1002/app.10513     

Interactions in compatible polymer systems

Summary Dynamic mechanical measurements on polystyrene — poly(vinylmethylether) blends are demonstrating that the relaxation processes in the blends are mainly connected with the motions of the poly(vinylmethylether) chain.Concerning the effect of mixing on topological properties of the blends, an increase of the polydispersity of the relaxation processes is detected in blends with high molecular weight polystyrene while low molecular weight polystyrene exerts an effect of dilution upon the relaxation of the high molecular poly(vinylmethylether) chains.From these measurements as well as from thermoanalytical data it results that the energetic interaction is more pronounced in the blends with oligomeric than with high molecular weight polystyrene. The glass transition temperature shows a larger deviation from additivity for blends with high molecular polystyrene than for those with oligomeric polystyrene.Herrn Prof. Dr. M. Kryszewski zum 60. Geburtstag herzlichst gewidmet     

Managing knowledge on communication and information flow in global software projects

Communication is a key success factor of distributed software projects. Poor communication has been identified as a main obstacle to successful collaboration. Global projects are especially endangered by information gaps between collaborating sites. Different communication styles, technical equipment, and missing awareness of each other can cause severe problems. Knowledge about actual and desired channels, paths, and modes of communication is required for improving communication in a globally distributed project. However, many project participants know little about communication and information flow in their projects. In this contribution, we focus on knowledge about communication and information flow. It is acquired by modelling on‐going and desired flows of information, including documented and non‐documented channels of information flow. We analyzed a distributed software project from the information flow perspective. Based on the findings, we developed specific techniques to improve information flow in distributed software development according to the FLOW Method. In a second distributed project, we evaluated one of the techniques. We found the FLOW mapping technique to be suitable for effectively spreading knowledge about communication and information flow in global software projects.     

List-based Data Structures for Efficient Management of Advance Reservations

Complex eScience and other sophisticated applications in the field of HPC imply new demands that queuing based resource management systems cannot meet. To guarantee Quality of Service and co-allocation in the Grid, planning based resource management systems implementing advance reservation are needed. These systems face new challenges as a planning based management system has to keep track of the jobs and reservations in the future. Additionally, during the negotiation process of incoming reservations, a good overview of the remaining, not-yet reserved capacity is needed—not only for the current allocation, but also for the whole book-ahead time. Therefore, the resource management problem becomes a two dimensional problem for advance reservations in this field. In this paper different data structures are investigated and discussed in order to fit to planning based resource management. As a result the benefits of using lists of resource allocation or free blocks are exposed. This general idea widely used to manage continuous resources is extended to cover not only the resource dimension but also the time dimension. The list of blocks approach is evaluated in a Grid level and a local resource management system for a computing cluster. The extensive simulations showed a better runtime and higher reservation success rate compared with the currently favored approach of a slotted time and the more sophisticated approach based on AVL trees.     

Structural evolution in gel-derived mullite precursors

The evolution of mullite from organo-metal gel precursors above 700 °C is found to be strongly influenced in both gel pieces and powdered samples by the thermal pretreatment at lower temperatures. Under the present conditions, the optimum preheating temperature was found to be 350 °C, at which temperature an anomalously high concentration was found of an Al species with a characteristic ²⁷Al magic-angle spinning NMR resonance at about 30 ppm. Such Al sites are often described as pentaco-ordinated, but an alternative assignment is considered. The optimum temperature for the formation of this Al site is also optimal for the catalytic formation of aromatic molecules from the residual organic fragments and/or solvent present. Mass spectrometry shows that under the present reaction conditions, these aromatics are thermally stable up to at least 900 °C in air, and the prolonged presence of their decomposition products (CO and water) could facilitate the transformation of the gel to crystalline mullite. The ²⁹Si NMR spectra indicate at least three different Si environments, including one which may arise from the formation of silicon oxycarbide glasses in these gels.     

Verifying anonymity in voting systems using CSP

We present formal definitions of anonymity properties for voting protocols using the process algebra CSP. We analyse a number of anonymity definitions, and give formal definitions for strong and weak anonymity, highlighting the difference between these definitions. We show that the strong anonymity definition is too strong for practical purposes; the weak anonymity definition, however, turns out to be ideal for analysing voting systems. Two case studies are presented to demonstrate the usefulness of the formal definitions: a conventional voting system, and Prêt à Voter, a paper-based, voter-verifiable scheme. In each case, we give a CSP model of the system, and analyse it against our anonymity definitions by specification checks using the Failures-Divergences Refinement (FDR2) model checker. We give a detailed discussion on the results from the analysis, emphasizing the assumptions that we made in our model as well as the challenges in modelling electronic voting systems using CSP.     

Behaviour of mortar and concrete at extremely low temperatures

The behaviour of hydrated cement paste, mortar and concrete specimens (age ～ 110 days) was investigated at low temperatures and after cyclic temperature-time histories. The relative changes of thermal strains, compressive and tensile splitting strength as well as the alteration of pore structure were studied. The strength in the frozen state increases with decreasing temperature and rising moisture content. If the frozen water-saturated mortar or concrete is reheated to room temperature a loss of strength is registered. The loss of strength increases with the number of temperature cycles. Storing the specimens at rel. hum. below 85% no losses were registered and no irreversible expansion occured. Water-saturated mortar showed after only 12 cycles an irreversible positive strain of 2,7%, indicating internal damage which was also proved by mercury porosimetry. Thus, the moisture content seems to be one of the decisive factors affecting the sensitivity of mortar and concrete subjected to extremely low temperatures.     

New inhibitors of the Tat-TAR RNA interaction found with a "fuzzy" pharmacophore model

TAR RNA is a potential target for AIDS therapy. Ligand-based virtual screening was performed to retrieve novel scaffolds for RNA-binding molecules capable of inhibiting the Tat-TAR interaction, which is essential for HIV replication. We used a "fuzzy" pharmacophore approach (SQUID) and an alignment-free pharmacophore method (CATS3D) to carry out virtual screening of a vendor database of small molecules and to perform "scaffold-hopping". A small subset of 19 candidate molecules were experimentally tested for TAR RNA binding in a fluorescence resonance energy transfer (FRET) assay. Both methods retrieved molecules that exhibited activities comparable to those of the reference molecules acetylpromazine and chlorpromazine, with the best molecule showing ten times better binding behavior (IC50 = 46 microM). The hits had molecular scaffolds different from those of the reference molecules.