Small volume PCR in PDMS biochips with integrated fluid control and vapour barrier

In this paper we demonstrate a new method for microfabricating PDMS devices that controls vapour diffusion, thereby reducing water loss at elevated temperatures and greatly increasing the reliability of the PCR. In the past, the vapour and liquid diffusion properties of the PDMS material in microfluidic devices have impaired performance. We show that this water loss is primarily due to vapour diffusion from the PDMS biochip and by implanting a polyethylene vapour barrier layer in the PDMS, the overall fluid loss was almost eliminated (reduced by a factor of 3). We have also developed a procedure to ensure irreversible bonding between the PDMS and the implant. With this improved microfabrication method we demonstrate the feasibility and advantages of performing small volume PCR genetic amplification (i.e. with less than 2 μl of PCR sample) within a PDMS–glass hybrid biochip. Diaphragm pumps and pinch-off valves were integrated in the system and these enabled fluid retention during the amplification stage and will facilitate higher levels of on-chip automation.     

An efficient face segmentation algorithm based on binary partition tree

This paper presents an efficient face segmentation algorithm based on binary partition tree. Skin-like regions are first obtained by integrating the results of pixel classification and watershed segmentation. Facial features are extracted by the techniques of valley detection and entropic thresholding, and are used to refine the skin-like regions. In order to segment the facial regions from the skin-like regions, a novel region merging algorithm is proposed by considering the impact of the common border ratio between adjacent regions, and the binary partition tree is used to represent the whole region merging process. Then the facial likeness of each node in the binary partition tree is evaluated using a set of fuzzy membership functions devised for a number of facial primitives of geometrical, elliptical and facial features. Finally, an efficient algorithm of node selecting in the binary partition tree is proposed for the final face segmentation, which can exactly segment the faces without any underlying assumption. The performance of the proposed face segmentation algorithm is demonstrated by experimental results carried out on a variety of images in different scenarios.     

Expression of green fluoscrescent protein gene in Sclerotinia sclerotiorum

Protoplasts of the pathogenic plant fungus,Sclerotinia sclerotiorum,were transformed using the pPGF plasmid,which contains green fluorescent protein gene,under the control of Aspergillus nidulans regulatory sequences. The pPGF plasmid was introduced by PEG/CaCl2 treatment. Positive transformants were harvested with hygromycin B (HYG) resistance as selective marker,and then were observed with green fluorescence phenomena in response to blue light,which suggested that GFP gene was cloned into genome DNA of S. sclerotiorum. The transformants were verified mitotically stable by Southern blotting analysis and passage culturing. This study is developed as an initial step for further research into infection mechanisms of S. sclerotiorum to plants and interactions with bio-control fungus.     

Vessel segmentation and width estimation in retinal images using multiscale production of matched filter responses

Automated segmentation of blood vessels in retinal images can help ophthalmologists screen larger populations for vessel abnormalities. However, automated vessel extraction is difficult due to the fact that the width of retinal vessels can vary from very large to very small, and that the local contrast of vessels is unstable. Further, the small vessels are overwhelmed by Gaussian-like noises. Therefore the accurate segmentation and width estimation of small vessels are very challenging. In this paper, we propose a simple and efficient multiscale vessel extraction scheme by multiplying the responses of matched filters at three scales. Since the vessel structures will have relatively strong responses to the matched filters at different scales but the background noises will not, scale production could further enhance vessels while suppressing noise. After appropriate selection of scale parameters and appropriate normalization of filter responses, the filter responses are then extracted and fused in the scale production domain. The experimental results demonstrate that the proposed method works well for accurately segmenting vessels with good width estimation.     

Seasonal fluctuations of organochlorine and triazines pesticides in the aquatic system of Ioannina basin (Greece)

For the period September 1984 to November 1985 water samples from the aquatic system of Ioannina basin were analyzed every second month for organochlorine and triazines pesticides. The detected compounds were found to follow a seasonal pattern, with an increment during summer followed by a decrease during winter and an increase again during late spring. This pattern was apparent for Ioannina lake as well as for the Kalamas river connected to it through the Lapsista's canal and tunnel. The results are discussed in terms of the amounts of the detected pesticides used for farming in the vicinity of the Ioannina basin and the seasonal rainfall.     

哈茨木霉丝/苏氨酸蛋白磷酸酶基因的克隆表达

为深入研究丝/苏氨酸蛋白磷酸酶的功能,从哈茨木霉cDNA文库中克隆丝/苏氨酸蛋白磷酸酶(PP2A)基因,并成功构建到原核表达载体pET28a,在大肠杆菌中表达.表达产物经SDS-PAGE电泳分析,在40.5kDa处出现特异性条带.在22℃以0.5mmol/L IPTG诱导时,目的蛋白大部分以可溶形式存在,在37℃以1.0mmol/L IPTG诱导时,目的蛋白则大部分以包涵体存在.全长cDNA序列为1286bp,5′非编码区91bp、3′非编码区237bp,编码327个氨基酸,没有信号肽.本研究为PP2A基因的功能验证奠定基础,以便进一步研究蛋白磷酸酶的功能,从而获得更多关于哈茨木霉蛋白磷酸酶作用机制的信息.     

Synthesis of highly-oriented polyacetylene film in a liquid crystal solvent

The synthesis of oriented polyacetylene films is investigated by using a nematic liquid crystal as polymerization solvent. Highly-oriented thin films are obtained under a flow of catalyst solution in which a nematic liquid crystal is used instead of common solvents such as hexane and toluene. Nematic liquid crystals that could be used as solvents for the Ziegler-Natta catalysts are limited due to their reactive substituents with the active species and/or the components of the catalyst. Among the available nematic liquid crystals, phenylcyclohexane type is stable in the presence of Ziegler-Natta catalysts. Since fibril alignment in the oriented films is found to be along the flow direction of the catalyst solution, it appears that the direction of fibril growth coincides with that of the liquid crystal orientation, which is caused by an alignment effect of the liquid crystal molecules under a flow of the solution.This new and simple method allows quite large highly-oriented films to be synthesized, which makes it possible to investigate various kinds of anisotropic properties of polyacetylene.     

Effect of N and C on stress corrosion cracking susceptibility of austenitic Fe18Cr10Mn-based stainless steels

Stress corrosion cracking (SCC) susceptibility of austenitic Fe18Cr10Mn alloys with 0.3N, 0.6N and 0.3N0.3C was investigated in aqueous chloride environment using a slow strain rate test method. The SCC susceptibility of Fe18Cr10Mn alloys in 2 M NaCl solution at 50 °C under constant anodic potential condition decreased with increase in N content from 0.3 to 0.6 wt%, and with addition of 0.3 wt% C to the Fe18Cr10Mn0.3N alloys. The present study strongly suggested that the beneficial effects of N and C on the SCC behavior of Fe18Cr10Mn alloys would be associated with the resistance to pitting corrosion initiation and the repassivation kinetics.     

The effect of Acetobacter sp. and a sulfate-reducing bacterial consortium from ethanol fuel environments on fatigue crack propagation in pipeline and storage tank steels

This paper evaluates the effects of microbiologically influenced corrosion (MIC) on fatigue-crack growth of candidate materials useful in expanding bio-ethanol usage, including a storage-tank steel (ASTM A36) and two pipeline steels (API 5L X52 and X70). The microbiological species sampled and cultivated from an ethanol fuel production stream are responsible for both acetic acid and hydrogen sulfide production that lead to significant increases in fatigue-crack growth rate across a wide range of stress-intensity-factor amplitudes (ΔK). The mechanism for increased fatigue damage is hydrogen uptake through adsorption into the steel, which embrittles material ahead of the growing fatigue crack.     

An examination of the temporal effects of environmental cues on pedestrians' feelings of safety

Although plans are made with people as the target, plan-making processes in most instances are dominated by top-down approaches, giving very little regard to how people perceive or feel about the cities they live in. The perceptions urban areas trigger and how these cause behavioural changes reflect the implications of planning and decision-making upon them. Prior studies indicate that environmental factors can trigger affective reactions in people. Thus, throughout this study, it was attempted to understand how environmental factors affect University students' perceptions of safety, which were quantified on the basis of their arousal, i.e. the calmness or stress felt, and walking speeds. Data on arousal were captured in real-time by a technically-sound, low-cost device assembled using free and open source software and hardware. The study could demarcate and rank the areas perceived to be “safe” and “unsafe” by the University students in real-time using the assembled device and identify which environmental factors have the most significant influence on their perception of safety. This study introduces the chance to determine unconscious reactions of people by triangulating data gathered by several measurement techniques that are directly measured in the field, which can be served as useful inputs for urban planning. Furthermore, the study confirms the value of the real-time sensing device as a tool beyond traditional methods in understanding feelings of safety in environmental settings.