Semiglobal synchronization of multiple generic linear agents with input saturation

This paper investigates the semiglobal synchronization problem for a group of agents with input saturation under directed interaction topology, where each agent is modeled as a generic linear system rather than the single‐integrator or double‐integrator dynamics. The main result is the construction of a feedback coupling gain that achieves semiglobal synchronization if all the agents have identically saturated linear dynamics, which can be of any order. It is shown that the coupling gain obtained via parametric Lyapunov equations can semiglobally synchronize any directed network provided that the interaction topology has a directed spanning tree. Furthermore, due to the use of parametric Lyapunov equations, a convergence rate is analytically obtained. Finally, a simulation example is provided to demonstrate the effectiveness and advantages of our theoretical findings. Copyright © 2013 John Wiley & Sons, Ltd.     

Protein engineering of alcohol dehydrogenases; effects of amino acid changes at positions 93 and 48 of yeast ADH1

By protein engineering we have investigated changes to two aminoacid residues (Trp93 and Ser48) in the substrate pocket of yeastalcohol dehydrogenase 1. Upon changing Thr48 to serine we producedan enzyme which has markedly greater activity towards aliphaticalcohols with chain length up to 8, together with a generalincrease in catalytic activity (V/K). Changes at position 93were less pronounced, with the Phe enzyme being more activethan the parent towards the range of alcohols but with the alanineenzyme showing very little difference from the wild-type. Enzymeswith the double changes at 48 and 93 showed increased activitytowards alcohols with 3–8 carbons but the increases werenot additive over the single changes. The enzymes with changesat the two positions would metabolize both stereoisomers of2-octanol whereas the parent ADH would attack only one of them.None of the engineered enzymes would attack cyclohexanol oraromatic alcohols. The results are in general agreement withthe prediction that reducing the size of amino acids in thesubstrate pocket would enhance the ability to oxidize alcoholslarger than ethanol.     

Single-channel EEG measurement of engagement in virtual rehabilitation: a validation study

Virtual Reality - Stroke rehabilitation suffers from low levels of patient engagement, impeding recovery. Virtual rehabilitation (VR) approaches can improve patient outcomes; however, there is...     

Design and implementation of a general software library for using NSGA-II with SWAT for multi-objective model calibration

Calibrating watershed-scale hydrologic models remains a critical but challenging step in the modeling process. The Soil and Water Assessment Tool (SWAT) is one example of a widely used watershed-scale hydrologic model that requires calibration. The calibration algorithms currently available to SWAT modelers through freely available and open source software, however, are limited and do not include many multi-objective genetic algorithms (MOGAs). The Non-Dominated Sorting Genetic Algorithm II (NSGA-II) has been shown to be an effective and efficient MOGA calibration algorithm for a wide variety of applications including for SWAT model calibration. Therefore, the objective of this study was to create an open source software library for multi-objective calibration of SWAT models using NSGA-II. The design and implementation of the library are presented, followed by a demonstration of the library through a test case for the Upper Neuse Watershed in North Carolina, USA using six objective functions in the model calibration.     

Virtual screening of eighteen million compounds against dengue virus: Combined molecular docking and molecular dynamics simulations study

Dengue virus is a major issue of tropical and sub-tropical regions. Dengue virus has been the cause behind the major alarming epidemics in the history with mass causalities from the decades. Unavailability of on-shelf drugs for the prevention of further proliferation of virus inside the human body results in immense number of deaths each year. This issue necessitates the design of novel anti-dengue drug. The protease enzyme pathway is the critical target for drug design due to its significance in the replication, survival and other cellular activities of dengue virus. Therefore, approximately eighteen million compounds from the ZINC database have been virtually screened against nonstructural protein 3 (NS3). The incremental construction algorithm of Glide docking program has been used with its features high throughput virtual screening (HTVS), standard precision (SP), extra precision (XP) and in combination of Prime module, induced fit docking (IFD) approach has also been applied. Five top-ranked compounds were then selected from the IFD results with better predicted binding energies with the catalytic triad residues (His51, Asp75, and Ser135) that may act as potential inhibitors for the underlying target protease enzyme. The top-ranked compounds ZINC95518765, ZINC44921800, ZINC71917414, ZINC39500661, ZINC36681949 have shown the predicted binding energies of −7.55, −7.36, −8.04, −8.41, −9.18 kcal/mol, respectively, forming binding interactions with three catalytically important amino acids. Top-docking poses of compounds are then used in molecular dynamics (MD) simulations. In computational studies, our proposed compounds confirm promising results against all the four serotypes of dengue virus, strengthening the opportunity of these compounds to work as potential on-shelf drugs against dengue virus. Further experimentation on the proposed compounds can result in development of strong inhibitors.     

A detection problem: Sensitivity and uncertainty analysis of a land surface temperature approach to detecting dynamics of water use by groundwater-dependent vegetation

Sustainable management of groundwater-dependent vegetation (GDV) requires the accurate identification of GDVs, characterisation of their water use dynamics and an understanding of associated errors. This paper presents sensitivity and uncertainty analyses of one GDV mapping method which uses temperature differences between time-series of modelled and observed land surface temperature (LST) to detect groundwater use by vegetation in a subtropical woodland. Uncertainty in modelled LST was quantified using the Jacobian method with error variances obtained from literature. Groundwater use was inferred where modelled and observed LST were significantly different using a Student's t-test. Modelled LST was most sensitive to low-range wind speeds (<1.5 m s⁻¹), low-range vegetation height (<=0.5 m), and low-range leaf area index (<=0.5 m² m⁻²), limiting the detectability of groundwater use by vegetation under such conditions. The model-data approach was well-suited to detection of GDV because model-data errors were lowest for climatic conditions conducive to groundwater use.     

Distributed formation control with relaxed motion requirements

Heterogeneous formation shape control with interagent bearing and distance constraints involves the design of a distributed control law that ensures the formation moves such that these interagent constraints are achieved and maintained. This paper looks at the design of a distributed control scheme to solve different formation shape control problems in an ambient two‐dimensional space with bearing, distance and mixed bearing and distance constraints. The proposed control law allows the agents in the formation to move in any direction on a half‐plane and guarantees that despite this freedom, the proposed shape control algorithm ensures convergence to a formation shape meeting the prescribed constraints. This work provides an interesting and novel contrast to much of the existing work in formation control where distance‐only constraints are typically maintained and where each agent's motion is typically restricted to follow a very particular path. A stability analysis is sketched, and a number of illustrative examples are also given. Copyright © 2014 John Wiley & Sons, Ltd.     

Semiglobal stabilization of saturated linear systems via multiple parametric Lyapunov equations

This paper investigates the problem of semiglobal stabilization with guaranteed flexible pole placement for saturated linear systems. To retain the advantages of the parametric Lyapunov equation, matrix‐partitioning idea is used to derive a new pole shift lemma. Starting from system matrix transformations, a recursive algorithm is proposed to shift every eigenvalue of a linear system separately without mode decomposition in each step. A new method introducing various parameters to every Lyapunov equation in each step is presented. As an application, the semiglobal stabilization with guaranteed flexible pole placement for saturated linear systems can be achieved by this method. Finally, its effectiveness and advantages are demonstrated via a simulation example. Copyright © 2013 John Wiley & Sons, Ltd.     

Multi-objective model auto-calibration and reduced parameterization: Exploiting gradient-based optimization tool for a hydrologic model

Multi-objective model optimization methods have been extensively studied based on evolutionary algorithms, but less on gradient-based algorithms. This study demonstrates a framework for multi-objective model calibration/optimization using gradient-based optimization tools. Model-independent software Parameter ESTimation (PEST) was used to auto-calibrate ISWAT, a modified version of the distributed hydrologic model Soil and Water Assessment Tool (SWAT2005), in the Shenandoah River watershed. The time-series processor TSPROC was used to combine multiple objectives into the auto-calibration process. Two sets of roughness coefficients for main channels, one assigned and calibrated according on soil types and one determined via empirical equations, were examined for stream discharge simulation. Five different weighting alternatives were investigated for their effects on ISWAT calibrations. Results showed that using Manning's roughness coefficients obtained from empirical equations improves simulation results and calibration efficiency. Applying a two-step weighting alternative to different observation groups would provide the best calibration results.     

A new robust observer-based adaptive type-2 fuzzy control for a class of nonlinear systems

In this paper, a novel robust observer-based adaptive controller is presented using a proposed simplified type-2 fuzzy neural network (ST2FNN) and a new three dimensional type-2 membership function is presented. Proposed controller can be applied to the control of high-order nonlinear systems and adaptation of the consequent parameters and stability analysis are carried out using Lyapunov theorem. Moreover, a new adaptive compensator is presented to eliminate the effect of the external disturbance, unknown nonlinear functions approximation errors and sate estimation errors. In the proposed scheme, using the Lyapunov and Barbalat's theorem it is shown that the system is stable and the tracking error of the system converges to zero asymptotically. The proposed method is simulated on a flexible joint robot, two-link robot manipulator and inverted double pendulums system. Simulation results confirm that in contrast to other robust techniques, our proposed method is simple, give better performance in the presence of noise, external disturbance and uncertainties, and has less computational cost.