GPU-based simulation of the long-range Potts model via parallel tempering

We discuss the efficiency of parallelization on graphical processing units (GPUs) for the simulation of the one-dimensional Potts model with long-range interactions via parallel tempering. We investigate the behavior of some thermodynamic properties, such as equilibrium energy and magnetization, critical temperatures as well as the separation between the first- and second-order regimes. By implementing multispin coding techniques and an efficient parallelization of the interaction energy computation among threads, the GPU-accelerated approach reached speedup factors of up to 37.     

Lateral Magnetic Near‐Field Imaging of Plasmonic Nanoantennas With Increasing Complexity

The design of many promising, newly emerging classes of photonic metamaterials and subwavelength confinement structures requires detailed knowledge and understanding of the electromagnetic near‐field interactions between their building blocks. While the electric field distributions and, respectively, the electric interactions of different nanostructures can be routinely measured, for example, by scattering near‐field microscopy, only recently experimental methods for imaging the magnetic field distributions became available. In this paper, we provide direct experimental maps of the lateral magnetic near‐field distributions of variously shaped plasmonic nanoantennas by using hollow‐pyramid aperture scanning near‐field optical microscopy (SNOM). We study both simple plasmonic nanoresonators, such as bars, disks, rings and more complex antennas. For the studied structures, the magnetic near‐field distributions of the complex resonators have been found to be a superposition of the magnetic near‐fields of the individual constituting elements. These experimental results, explained and validated by numerical simulations, open new possibilities for engineering and characterization of complex plasmonic antennas with increased functionality.     

New Strategies and Methods to Study Interactions between Tobacco Mosaic Virus Coat Protein and Its Inhibitors

Studies of the targets of anti-viral compounds are hot topics in the field of pesticide research. Various efficient anti-TMV (Tobacco Mosaic Virus) compounds, such as Ningnanmycin (NNM), Antofine (ATF), Dufulin (DFL) and Bingqingxiao (BQX) are available. However, the mechanisms of the action of these compounds on targets remain unclear. To further study the mechanism of the action of the anti-TMV inhibitors, the TMV coat protein (TMV CP) was expressed and self-assembled into four-layer aggregate disks in vitro, which could be reassembled into infectious virus particles with TMV RNA. The interactions between the anti-TMV compounds and the TMV CP disk were analyzed by size exclusion chromatography, isothermal titration calorimetry and native-polyacrylamide gel electrophoresis methods. The results revealed that assembly of the four-layer aggregate disk was inhibited by NNM; it changed the four-layer aggregate disk into trimers, and affected the regular assembly of TMV CP and TMV RNA. The four-layer aggregate disk of TMV CP was little inhibited by ATF, DFL and BQX. Our results provide original data, as well as new strategies and methods, for research on the mechanism of action of anti-viral drugs.     

Evaluation across and within collaborative manufacturing networks: a comparison of manufacturers’ interactions and attributes

Evaluation on collaborative manufacturing network (CMN) structure characteristics has important implications for network operations such as production decision-making, product recovery, creating consensus. Several recent studies suggest that augmenting network structure with nodes’ attributes can provide a more fine-grained understanding of the network. However, there have been few studies to provide a systematic understanding of these effects in a CMN at scale. This gap is bridged using an industrial printing machinery CMN data-set collected on a web-based producing and outsourcing service platform. Novel phenomena with respect to both interaction and attribute metrics across and within the CMNs are observed. Moreover, although many studies employ either interaction or attribute data to study the relative roles of manufacturers in a CMN, relatively little is known about the relationship between these two types of data. This study explores this relationship by comparing two defined metrics (i.e. relational capability and node capability), which evaluate the manufacturers’ interactions and attributes, respectively. We examine to what extent the two metrics of manufacturers correlate with each other, and how possible dissimilarities and similarities can be explained based on the collected industrial CMN data-set. The insights thereby provide a better basis for efficient operations decision-making in CMN.     

Biofilm formation by Salmonella Typhimurium and Staphylococcus aureus on stainless steel under either mono- or dual-species multi-strain conditions and resistance of sessile communities to sub-lethal chemical disinfection

Intercellular interactions encountered within and between different bacterial species are believed to play key roles in both biofilm formation and antimicrobial resistance. In this study, Salmonella Typhimurium and Staphylococcus aureus (3 strains per species) were left to form biofilms on stainless steel coupons incubated at 20 °C for 144 h (i.e. 6 days), in periodically renewable growth medium, under either mono- or dual-species conditions. Subsequently, the developed sessile communities were exposed for 6 min to sub-lethal concentrations of: (i) benzalkonium chloride (BC, 50 ppm), (ii) sodium hypochlorite (NaClO, 10 ppm), or (iii) peroxyacetic acid (PAA, 10 ppm). The dominance of each strain in the mono- and dual-species biofilm communities, both before and after disinfection, was monitored by pulsed field gel electrophoresis (PFGE). Results revealed that dual-species conditions led to a significant (ca. 10-fold) reduction in the number of sessile cells for both species, compared to mono-species ones, with interspecies interactions however found to not exert any significant effect on the disinfection resistance of each species as a whole. However, PFGE analysis revealed that the different strains here employed behaved differently with regard to biofilm formation and disinfection resistance, with this effect to be also strongly dependent on the culture conditions (mono-/dual-species) and the disinfectant applied. Such results expand our knowledge on multi-species biofilms formed by foodborne pathogenic bacteria and could hopefully be helpful in our efforts to develop effective elimination strategies and thus improve food safety.     

Teaching on diversity: The mutual influence of students and instructors.

A wide range of emotional experiences, including anxiety, relief, guilt, and anger, are often expressed either implicitly or explicitly by instructors and students in graduate courses focused on diversity and psychotherapy. This article addresses the ways in which teaching on race and ethnicity can lay the groundwork for critical learning, impasses, and enactments. Contributions of psychodynamic perspectives to multicultural education are thought to be particularly relevant to psychologists, because they involve a study of individual and group dynamics as reflective of larger social structures and sociocultural histories. Findings from multicultural research and psychodynamic perspectives related to affective processes involved in multicultural learning will be explored. The author discusses specific experiences of teaching diversity courses to graduate students in psychology with the purpose of illustrating resistance to talking openly about one’s feelings about diversity within a group setting, and the difficulty experienced by students and instructors to tolerate undiscovered and/or unprocessed material related to diversity. These vignettes involve an examination of subjectivity of race and ethnicity and its influence on the interactions between fellow students and instructors. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Chemical Recognition of Partner Plant Species by Foundress Ant Queens in Macaranga–Crematogaster Myrmecophytism

The partnership in the Crematogaster–Macaranga ant–plant interaction is highly species-specific. Because a mutualistic relationship on a Macaranga plant starts with colonization by a foundress queen of a partner Crematogaster species, we hypothesized that the foundress queens select their partner plant species by chemical recognition. We tested this hypothesis with four sympatric Macaranga species and their Crematogaster plant-ant species. We demonstrated that foundress Crematogaster queens can recognize their partner Macaranga species by contact with the surface of the seedlings, that they can recognize compounds from the stem surface of seedlings of their partner plant species, and that the gas chromatographic profiles are characteristic of the plant species. These findings support the hypothesis that foundress queens of the Crematogaster plant-ant species select their partner Macaranga species by recognizing nonvolatile chemical characteristics of the stem surfaces of seedlings.     

Use of Self-assembled Monolayers at Variable Coverage to Control Interface Bonding in a Model Study of Interfacial Fracture: Pure Shear Loading

The relationships between fundamental interfacial interactions, energy dissipation mechanisms, and fracture stress or fracture energy in a glassy thermoset/inorganic solid joint are not well understood. This subject is addressed with a model system involving an epoxy adhesive on a polished silicon wafer containing its native oxide. The proportions of physical and chemical interactions at the interface, and the in-plane distribution, are varied using self-assembling monolayers of octadecyltrichlorosilane (ODTS). The epoxy interacts strongly with the bare silicon oxide surface, but interacts only weakly with the methylated tails of the ODTS monolayer. The fracture stress is examined as a function of ODTS coverage in the napkin-ring (nominally pure shear) loading geometry. The relationship between fracture stress and ODTS coverage is catastrophic, with a large change in fracture stress occurring over a narrow range of ODTS coverage. This transition in fracture stress does not correspond to a wetting transition of the epoxy. Rather, the transition in fracture stress corresponds to the onset of large-scale plastic deformation within the epoxy. We postulate that the transition in fracture stress occurs when the local stress that the interface can support becomes comparable to the yield stress of the epoxy. The fracture results are independent of whether the ODTS deposition occurs by island growth (T_dep = 10°C) or by homogeneous growth (T_dep = 24°C).     

Thermodynamic mechanism of free heme action on sickle cell hemoglobin polymerization

For insights into the mechanisms of heme action on the rate of sickle cell hemoglobin polymerization, we determine the erythrocytic concentration of free heme using a novel method based on enzymatic catalysis and luminescence. We find in sickle cell patients 44 ± 10 µM, in sickle trait individuals, 33 ± 4 µM, and in healthy adults, 21 ± 2 µM. We test the applicability of two mechanisms of heme action: a kinetic one, whereby heme aggregates serve as heterogeneous nucleation centers, and a thermodynamic pathway, in which free heme enhances the attraction between sickle hemoglobin (HbS) molecules in solution. We show that the latter mechanism exclusively operates. The enhanced attraction leads to increase of the total volume of a population of dense liquid clusters by about two orders of magnitude. As the dense liquid clusters serve as locations and precursors to the formation of the HbS polymer nuclei, their increased volume directly leads to faster polymer nucleation. © 2015 American Institute of Chemical Engineers AIChE J, 61: 2861–2870, 2015