Structural Aspects and Prediction of Calmodulin-Binding Proteins

Calmodulin (CaM) is an important intracellular protein that binds Ca²⁺ and functions as a critical second messenger involved in numerous biological activities through extensive interactions with proteins and peptides. CaM’s ability to adapt to binding targets with different structures is related to the flexible central helix separating the N- and C-terminal lobes, which allows for conformational changes between extended and collapsed forms of the protein. CaM-binding targets are most often identified using prediction algorithms that utilize sequence and structural data to predict regions of peptides and proteins that can interact with CaM. In this review, we provide an overview of different CaM-binding proteins, the motifs through which they interact with CaM, and shared properties that make them good binding partners for CaM. Additionally, we discuss the historical and current methods for predicting CaM binding, and the similarities and differences between these methods and their relative success at prediction. As new CaM-binding proteins are identified and classified, we will gain a broader understanding of the biological processes regulated through changes in Ca²⁺ concentration through interactions with CaM.     

Process knowledge-based random forest regression for model predictive control on a nonlinear production process with multiple working conditions

In process industry, predictive control approaches have been widely used for nonlinear production processes. Practically, the predictor in a predictive controller is extremely important since it provides future states for the optimization problem of controllers. The conventional predictive controller with precise mathematical predictors approximating the state space of physical systems is difficult and time-consuming for nonlinear production processes, and it performs poorly over a wide range of working conditions and with significant disturbances. To address the challenges, the trend of applying artificial intelligence emerges. However, the industrial process-specific knowledge is ignored in most cases. In this study, a predictive controller with a control process knowledge-based random forest (RF) model is proposed. Specifically, working data are clustered at first to handle diverse working conditions. Then, a process knowledge-based forest predictor, namely MIW-RF model with a redesigned cascading RF structure, is proposed to incorporate control process knowledge into modeling. Thus, future states of controlled variables could be more accurately acquired for the optimizer. A simplified version of the predictive model is also developed with quick model training and updating. The proposed predictive methods are finally introduced into the controller design. According to the empirical results, the proposed methods deliver a better control performance against benchmarks, including more accurate anticipated controlled-variable responses, better set-point tracking and disturbance rejection capability.     

A tool for mass transfer evaluation in packed-bed columns for chemical engineering students

This paper presents a Microsoft Excel tool to calculate liquid-gas mass transfer coefficients in packed towers to support numerical design activities in the courses of Unit Operations for Industrial Process and Sustainable Process Design for the Master’s degree in Chemical Engineering of the University of Naples Federico II (Italy).The Mass Transfer Solver Tool (MT Solver Tool) uses several available models to estimate, separately, the values of liquid and gas mass-transfer coefficients and the wet surface area for 144 random and structured packings of interest for absorption/stripping and distillation processes. In addition, a separate spreadsheet can be used in a user-defined mode, to evaluate the mass transfer coefficients with new packing types or to interpret experimental data when the geometrical and physical characteristics of the packing are known. Eventually, the tool is supplied with a data library, where packing geometry and model fitting parameters can be retrieved.The software is aimed to support students and educators in the Unit Operations for Industrial Process and Sustainable Process Design courses. In particular, this is meant to be an example on how the accuracy of design algorithms adopted in unit operation processes is affected by the use of the underpinning correlations for mass transfer rate or pressure drops. Besides, this is aimed to encourage comparison of different correlations when exact field data are not available. Besides, chemical engineers and researchers interested in packed columns design and modelling data may also benefit from the utilization of the software. The MT Solver Tool was introduced to students in a dedicated tutorial lesson after lecturers on packed column design algorithms for distillation, absorption and stripping. Most of the students of the course participated to a group training aimed to simulate the design of an absorption column supported by the MT Solver Tool providing feedback on its application.After the training, an anonymous survey was proposed to the students to monitor the approval rating of the proposed activity and the use of the MT Solver Tool software to support numerical calculations.     

Stochastic evaluation of leakages through holes in wrinkle networks of composite liners

This paper presents a study on stochastic evaluation of leakages through holes in wrinkle networks of composite liners. The statistical parameters of wrinkles are used as indexes to describe the spatial distributions of wrinkles in a wrinkle network and the wrinkle density is modeled as a random field in the proposed approach, which allows the construction of a database about how wrinkles may be distributed in different conditions and provides input parameters for leakage evaluation at the design stage when the site has not been constructed yet and the aerial image of the wrinkle network (AWN) is unavailable. Statistical analyses were performed on wrinkle geometric parameters and wrinkle density of wrinkles from three sites reported in the literature. The procedures of generating random wrinkle networks (RWNs) based on the statistical parameters of wrinkles are introduced. The proposed approach was applied to typical examples and showed sufficient accuracy when compared to the evaluated leakages based on the corresponding AWNs. Wrinkle density is recommended to be modeled as random field.     

A new method of predicting the saturation pressure of oil reservoir and its application

Saturation pressure is a vital parameter of oil reservoir which can reflect the oilfield characteristics and determine the oilfield development process, and it is determined by experiments in the laboratory in general. However, there was only one well with saturation pressure test in this target reservoir, and it is necessary to determine whether this parameter is right or not.In this work, we present a new method for quickly determining saturation pressure using machine learning algorithms, including random forest regressor (RF), support vector machine (SVM), decision trees (DT), and artificial neural network (ANN or NN). Using these approaches, saturation pressure was obtained by using the initial solution gas-oil ratio (GOR), temperature, API gravity and other reservoir-fluid data available in the oilfields. Compared with the empirical formula for saturation pressure calculation, the calculated result shows that the accuracy given from machine learning is higher than that from other formulas at home and abroad, and has a good match with the lab test. On the basis of the calculated saturation pressure, it can determine whether the reservoir enters into the stage of dissolved gas drive or not, which also provides the basis for maintaining the reservoir pressure by water injection in advance, rational development decision-making and work over measures.This approach above can provide technical guidance for predicting the saturation pressure in the development of different kinds of reservoirs, including the sandstone reservoirs and carbonate reservoirs.     

MOOC Learner’s Final Grade Prediction Based on an Improved Random Forests Method

Massive Open Online Course (MOOC) has become a popular way of online learning used across the world by millions of people. Meanwhile, a vast amount of information has been collected from the MOOC learners and institutions. Based on the educational data, a lot of researches have been investigated for the prediction of the MOOC learner’s final grade. However, there are still two problems in this research field. The first problem is how to select the most proper features to improve the prediction accuracy, and the second problem is how to use or modify the data mining algorithms for a better analysis of the MOOC data. In order to solve these two problems, an improved random forests method is proposed in this paper. First, a hybrid indicator is defined to measure the importance of the features, and a rule is further established for the feature selection; then, a Clustering-Synthetic Minority Over-sampling Technique (SMOTE) is embedded into the traditional random forests algorithm to solve the class imbalance problem. In experiment part, we verify the performance of the proposed method by using the Canvas Network Person-Course (CNPC) dataset. Furthermore, four well-known prediction methods have been applied for comparison, where the superiority of our method has been proved.     

基于LSTM-RF模型的城市道路交通流预测

交通流预测作为信号协调和出行时间预测等任务的基础,成为了交通领域的研究点。对于交通流预测问题,研究人员提出了多种方法,但这些方法大多只使用交通流数据的时域信息进行交通流预测,忽略了空间相关性对于预测目标路段流的影响,导致预测精度不理想。基于组合模型的思想提出了一种称为LSTM-RF的交通流预测模型。在交通流预测过程中,首先使用LSTM模型提取预测目标路段的时序特征,再将其预测值与采集的相邻上下游路段信息同时作为随机森林模型的输入特征,进行交通流时空相关性分析,获得最终的预测结果。并通过贵阳市车牌识别系统采集的城区132条路段的交通流数据进行实验验证。结果表明:该方法在预测精度上优于单一模型,并且预测误差相比单一模型有明显减少。     

Yield improvement and yield variability reduction in an EOQ model with planned shortages and random yield

This paper reports the results of an investigation of a set of continuous time, constant demand inventory models under the condition of yield uncertainty. Specifically, the impact of yield improvement programs on lot size, backorder level, and the resulting costs are examined. Models for improving yield rate and reducing yield variability are developed and examined through a series of numerical exercises. In addition, a model for the simultaneous improvement of yield rate and yield variability is presented for the case where there is a relationship between the mean and variance of the yield distribution. In all cases, investment programs improve the picture with respect to manufacturing yield for processes which are not necessarily under statistical control.     

Forest parameters retrieval with dual-baseline polarimetric SAR interferometry based on clustering analysis

Forest parameters inversion is an important application of Polarimetric Synthetic Aperture Radar Interferometry(PolInSAR). To resolve the volume decorrelation coefficient ambiguity of single-baseline PolInSAR, a new dual-baseline PolInSAR approach is proposed in this paper. The correlation of dual-baseline data is fully investigated to resolve the ambiguity problem effectively, and the performance of the proposed approach is proved to be of great robustness in a very small baseline ratio system. Finally, experimental results with ESA dual-baseline PolInSAR simulated data validate the effectiveness and robustness of the proposed approach.     

Balancing exploration and exploitation in differential evolution via variable scaling factors: An application to practical problems

Some optimization problems in the field of nuclear engineering, as for example the incore nuclear fuel management and a nuclear reactor core design, are highly multimodal, requiring techniques that overcome local optima, exploring the search space and promoting the exploitation of its most promising areas. The differential evolution algorithm (DE) relies mainly on the mechanism of mutation, where an individual is perturbed using the weighted difference (with the so-called “scaling factor” F) between two randomly chosen individuals. DE's canonical version employs a constant value of F. However, this parameter should be variable in order to balance the exploration and exploitation of the search space. In this work, we test some variable scaling factors from the literature and present the novel exponential scaling factor. These methods are applied to two problems: the aforementioned core design and the turbine balancing problem, which is an NP-hard (i.e. intrinsically harder than those that can be solved in nondeterministic polynomial time) combinatorial optimization problem that can be used to assess the potential of an algorithm to be applied to fuel management optimization. DE with variable scaling factors perform well in both problems, showing potential to be used in other nuclear science and engineering optimization problems.