Structural Aspects and Prediction of Calmodulin-Binding Proteins

Calmodulin (CaM) is an important intracellular protein that binds Ca²⁺ and functions as a critical second messenger involved in numerous biological activities through extensive interactions with proteins and peptides. CaM’s ability to adapt to binding targets with different structures is related to the flexible central helix separating the N- and C-terminal lobes, which allows for conformational changes between extended and collapsed forms of the protein. CaM-binding targets are most often identified using prediction algorithms that utilize sequence and structural data to predict regions of peptides and proteins that can interact with CaM. In this review, we provide an overview of different CaM-binding proteins, the motifs through which they interact with CaM, and shared properties that make them good binding partners for CaM. Additionally, we discuss the historical and current methods for predicting CaM binding, and the similarities and differences between these methods and their relative success at prediction. As new CaM-binding proteins are identified and classified, we will gain a broader understanding of the biological processes regulated through changes in Ca²⁺ concentration through interactions with CaM.     

Process knowledge-based random forest regression for model predictive control on a nonlinear production process with multiple working conditions

In process industry, predictive control approaches have been widely used for nonlinear production processes. Practically, the predictor in a predictive controller is extremely important since it provides future states for the optimization problem of controllers. The conventional predictive controller with precise mathematical predictors approximating the state space of physical systems is difficult and time-consuming for nonlinear production processes, and it performs poorly over a wide range of working conditions and with significant disturbances. To address the challenges, the trend of applying artificial intelligence emerges. However, the industrial process-specific knowledge is ignored in most cases. In this study, a predictive controller with a control process knowledge-based random forest (RF) model is proposed. Specifically, working data are clustered at first to handle diverse working conditions. Then, a process knowledge-based forest predictor, namely MIW-RF model with a redesigned cascading RF structure, is proposed to incorporate control process knowledge into modeling. Thus, future states of controlled variables could be more accurately acquired for the optimizer. A simplified version of the predictive model is also developed with quick model training and updating. The proposed predictive methods are finally introduced into the controller design. According to the empirical results, the proposed methods deliver a better control performance against benchmarks, including more accurate anticipated controlled-variable responses, better set-point tracking and disturbance rejection capability.     

In situ 2D mapping of hydrogen entry into an Fe sheet under a droplet of NaCl solution using a hydrogenochromic sensor

The distribution of hydrogen entering an Fe sheet under a droplet of NaCl solution was successfully visualized using a hydrogenochromic sensor consisting of a polyaniline layer and a Ni intermediate layer. At the initial stage of corrosion, the hydrogen entry was barely confirmed. The hydrogen entry was observed as the corrosion proceeded, and the preferential hydrogen entry site corresponded to the rust-formed area. It was postulated that the hydrogen entry is promoted by the decrease in pH due to the hydrolysis reactions of Fe ions under the rust. The hydrogenochromic sensor paves the way for the visualization of the hydrogen entry into metals under corrosion conditions.     

Experimental investigation of gas-liquid flow in a vertical venturi installed downstream of a horizontal blind tee flow conditioner and the flow regime transition

A venturi device is commonly used as an integral part of a multiphase flowmeter (MPFM) in real-time oil-gas production monitoring. Partial flow mixing is required by installing the venturi device vertically downstream of a blind tee pipework that conditions the incoming horizontal gas-liquid flow (for an accurate determination of individual phase fraction and flow rate). To study the flow-mixing effect of the blind tee, high-speed video flow visualization of gas-liquid flows has been performed at blind tee and venturi sections by using a purpose-built transparent test rig over a wide range of superficial liquid velocities (0.3–2.4 m/s) and gas volume fractions (10–95%). There is little ‘homogenization’ effect of the blind tee on the incoming intermittent horizontal flow regimes across the tested flow conditions, with the flow remaining intermittent but becoming more axis-symmetric and predictable in the venturi measurement section. A horizontal (blind tee) to vertical (venturi) flow-pattern transition map is proposed based on gas and liquid mass fluxes (weighted by the Baker parameters). Flow patterns can be identified from the mean and variance of a fast electrical capacitance holdup measured at the venturi throat.     

No-reference quality assessment of dynamic sports videos based on a spatiotemporal motion model

This paper proposes an approach to improve the performance of no-reference video quality assessment for sports videos with dynamic motion scenes using an efficient spatiotemporal model. In the proposed method, we divide the video sequences into video blocks and apply a 3D shearlet transform that can efficiently extract primary spatiotemporal features to capture dynamic natural motion scene statistics from the incoming video blocks. The concatenation of a deep residual bidirectional gated recurrent neural network and logistic regression is used to learn the spatiotemporal correlation more robustly and predict the perceptual quality score. In addition, conditional video block-wise constraints are incorporated into the objective function to improve quality estimation performance for the entire video. The experimental results show that the proposed method extracts spatiotemporal motion information more effectively and predicts the video quality with higher accuracy than the conventional no-reference video quality assessment methods.     

近五年地质学领域研究热点的数据可视化分析

本文选取2016年1月至2021年7月在地质学领域权威期刊：《地质学报》、《岩石学报》、《地学前缘》上发表的文献为研究对象,利用Endnote、Excel和Vosviewer等软件对数据进行相应的整理和清洗,分析了相关热点与关键词的耦合关系。结果显示：在成矿时代同位素定年的研究中,Lu-Hf年代学逐渐成为地学研究的一个热点；随着测试分析手段的进步,西藏地区作为研究青藏高原前寒武纪-早古生代演化历史的关键,逐渐成为当下国内外研究热点地区；随着信息技术的发展,地学研究的数据化、信息化,已成为地质学研究的热门方向。     

ATSP:时态网络可视化的自适应时间片划分方法

现有的时态网络可视化方法大多采用等量时间片来可视化网络的演变，不利于时态模式的快速挖掘和发现。为此，根据时态网络固有的特征提出自适应时间片划分方法（Adaptive Time Slice Partition method，ATSP）。在时态网络的两种表示方式（基于事件的表示方式和基于快照的表示方式）的基础上，构建了ATSP的基础模型，同时提出了一种改进模型用来描述事件间隔时间服从长尾分布的时态网络。为了实现时间片的不等量划分，针对探索任务的不同提出了基于时态模式的ATSP规则和基于中心节点的ATSP规则，并提出了实现算法--层次划分算法（Hierarchical Partition algorithm，HP）和增量划分算法（Incremental Partition algorithm，IP）。实验结果表明，ATSP方法比传统的时间片划分方法更能准确地表示网络的时态特征，且该方法应用于可视化时，能有效归纳并展示网络的特征，明显提高了视觉分析的效率。     

CV3: Visual Exploration,Assessment, and Comparison of CVs

The Curriculum Vitae (CV, also referred to as “résumé”) is an established representation of a person's academic and professional history. A typical CV is comprised of multiple sections associated with spatio‐temporal, nominal, hierarchical, and ordinal data. The main task of a recruiter is, given a job application with specific requirements, to compare and assess CVs in order to build a short list of promising candidates to interview. Commonly, this is done by viewing CVs in a side‐by‐side fashion. This becomes challenging when comparing more than two CVs, because the reader is required to switch attention between them. Furthermore, there is no guarantee that the CVs are structured similarly, thus making the overview cluttered and significantly slowing down the comparison process. In order to address these challenges, in this paper we propose “CV3”, an interactive exploration environment offering users a new way to explore, assess, and compare multiple CVs, to suggest suitable candidates for specific job requirements. We validate our system by means of domain expert feedback whose results highlight both the efficacy of our approach and its limitations. We learned that CV3 eases the overall burden of recruiters thereby assisting them in the selection process.     

采用八叉树和OSG分页结点的海量点云三维可视化

针对现有海量点云可视化方法存在索引构建时间长、内存占用大等问题，研究一种八叉树索引结合OSG分页结点的快速可视化方法，可在占用较小内存的基础上快速建立点云索引并实时调度。采用八叉树索引结构对海量点云进行数据组织，建立各层级的八叉树结点并以文件映射的方式分块保存，对结点文件重组织转换为支持OSG渲染引擎的多分辨率点云数据。采用基于OSG分页结点的实时调度技术，对海量点云进行高质量可视化。与目前两款主流的点云数据处理商业软件进行实验对比分析，结果表明所提方法具有索引建立速度快、内存占用小等优点，同时可视化交互更加流畅，适用于各种配置计算机下海量点云数据的调度管理与实时可视化。