Removing data and using metafounders alleviates biases for all traits in Lacaune dairy sheep predictions

Bias in dairy genetic evaluations, when it exists, has to be understood and properly addressed. The origin of biases is not always clear. We analyzed 40 yr of records from the Lacaune dairy sheep breeding program to evaluate the extent of bias, assess possible corrections, and emit hypotheses on its origin. The data set included 7 traits (milk yield, fat and protein contents, somatic cell score, teat angle, udder cleft, and udder depth) with records from 600,000 to 5 million depending on the trait, ～1,900,000 animals, and ～5,900 genotyped elite artificial insemination rams. For the ～8% animals with missing sire, we fit 25 unknown parent groups. We used the linear regression method to compare “partial” and “whole” predictions of young rams before and after progeny testing, with 7 cut-off points, and we obtained estimates of their bias, (over)dispersion, and accuracy in early proofs. We tried (1) several scenarios as follows: multiple or single trait, the “official” (routine) evaluation, which is a mixture of both single and multiple trait, and “deletion” of data before 1990; and (2) several models as follows: BLUP and single-step genomic (SSG)BLUP with fixed unknown parent groups or metafounders, where, for metafounders, their relationship matrix gamma was estimated using either a model for inbreeding trend, or base allele frequencies estimated by peeling. The estimate of gamma obtained by modeling the inbreeding trend resulted in an estimated increase of inbreeding, based on markers, faster than the pedigree-based one. The estimated genetic trends were similar for most models and scenarios across all traits, but were shrunken when gamma was estimated by peeling. This was due to shrinking of the estimates of metafounders in the latter case. Across scenarios, all traits showed bias, generally as an overestimate of genetic trend for milk yield and an underestimate for the other traits. As for the slope, it showed overdispersion of estimated breeding values for all traits. Using multiple-trait models slightly reduced the overestimate of genetic trend and the overdispersion, as did including genomic information (i.e., SSGBLUP) when the gamma matrix was estimated by the model for inbreeding trend. However, only deletion of historical data before 1990 resulted in elimination of both kind of biases. The SSGBLUP resulted in more accurate early proofs than BLUP for all traits. We considered that a snowball effect of small errors in each genetic evaluation, combined with selection, may have resulted in biased evaluations. Improving statistical methods reduced some bias but not all, and a simple solution for this data set was to remove historical records.     

Breeding schemes with optimum-contribution selection or truncation selection for beef cattle destined for use on dairy females

We tested the hypothesis that the size of a beef cattle population destined for use on dairy females is smaller under optimum-contribution selection (OCS) than under truncation selection (TRS) at the same genetic gain (ΔG) and the same rate of inbreeding (ΔF). We used stochastic simulation to estimate true ΔG realized at a 0.005 ΔF in breeding schemes with OCS or TRS. The schemes for the beef cattle population also differed in the number of purebred offspring per dam and the total number of purebred offspring per generation. Dams of the next generation were exclusively selected among the one-year-old heifers. All dams were donors for embryo transfer and produced a maximum of 5 or 10 offspring. The total number of purebred offspring per generation was: 400, 800, 1,600 or 4,000 calves, and it was used as a measure of population size. Rate of inbreeding was predicted and controlled using pedigree relationships. Each OCS (TRS) scheme was simulated for 10 discrete generations and replicated 100 (200) times. The OCS scheme and the TRS scheme with a maximum of 10 offspring per dam required approximately 783 and 1,257 purebred offspring per generation to realize a true ΔG of €14 and a ΔF of 0.005 per generation. Schemes with a maximum of 5 offspring per dam required more purebred offspring per generation to realize a similar true ΔG and a similar ΔF. Our results show that OCS and multiple ovulation and embryo transfer act on selection intensity through different mechanisms to achieve fewer selection candidates and fewer selected sires and dams than under TRS at the same ΔG and a fixed ΔF. Therefore, we advocate the use of a breeding scheme with OCS and multiple ovulation and embryo transfer for beef cattle destined for use on dairy females because it is favorable both from an economic perspective and a carbon footprint perspective.     

Convolutional Neural Network Auto Encoder Channel Estimation Algorithm in MIMO-OFDM System

Higher transmission rate is one of the technological features of prominently used wireless communication namely Multiple Input Multiple Output-Orthogonal Frequency Division Multiplexing (MIMO–OFDM). One among an effective solution for channel estimation in wireless communication system, specifically in different environments is Deep Learning (DL) method. This research greatly utilizes channel estimator on the basis of Convolutional Neural Network Auto Encoder (CNNAE) classifier for MIMO-OFDM systems. A CNNAE classifier is one among Deep Learning (DL) algorithm, in which video signal is fed as input by allotting significant learnable weights and biases in various aspects/objects for video signal and capable of differentiating from one another. Improved performances are achieved by using CNNAE based channel estimation, in which extension is done for channel selection as well as achieve enhanced performances numerically, when compared with conventional estimators in quite a lot of scenarios. Considering reduction in number of parameters involved and re-usability of weights, CNNAE based channel estimation is quite suitable and properly fits to the video signal. CNNAE classifier weights updation are done with minimized Signal to Noise Ratio (SNR), Bit Error Rate (BER) and Mean Square Error (MSE).     

Multidirectional focus measure for accurate three-dimensional shape recovery of microscopic objects

Shape from focus (SFF) is a technique to recover the shape of an object from multiple images taken at various focus settings. Most of conventional SFF techniques compute focus value of a pixel by applying one of focus measure operators on neighboring pixels on the same image frame. However, in the optics with limited depth of field, neighboring pixels of an image have different degree of focus for curved objects, thus the computed focus value does not reflect the accurate focus level of the pixel. Ideally, an accurate focus value of a pixel needs to be measured from the neighboring pixels lying on tangential plane of the pixel in image space. In this article, a tangential plane on each pixel location (i, j) in image sensor is searched by selecting one of five candidate planes based on the assumption that the maximum variance of focus values along the optical axis is achieved from the neighborhood lying on tangential plane of the pixel (i, j). Then, a focus measure operator is applied on neighboring pixels lying on the searched plane. The experimental results on both the synthetic and real microscopic objects show the proposed method produces more accurate three-dimensional shape in comparison to conventional SFF method that applies focus measures on original image planes.     

基于全相位预处理的时域多重信号分类波达方向估计方法

低信噪比下,针对宽带短脉冲情况下频域多重信号分类(MUSIC)中噪声子空间估计不稳定问题,提出一种基于全相位预处理的时域多重信号分类波达方向(DOA)估计方法。①对线列阵接收数据进行分组处理;②按搜索角度对各组数据进行相移预处理,并对各组数据预处理结果进行相加,得到一组新数据;③对线列阵接收数据在时域构建相移后的协方差矩阵,在更短数据长度下,稳定实现噪声子空间估计,并依据估计出的噪声子空间含有的正交特性,通过单位矩阵加法器得到相应空间谱估计值,实现波达方向估计。数值仿真和实测数据处理结果表明,相比频域MUSIC方法,该方法有效提高了线列阵接收数据协方差矩阵中信号含有量和信噪比,能够在更短数据长度情况下实现对噪声子空间的稳定估计,具有较好的稳定性和检测性能,提高了MUSIC方法在实际波达方向估计中的鲁棒性。     

海上稠油油田蒸汽吞吐产量确定新方法

针对目前蒸汽吞吐产量预测模型假设条件简单、普适性差等问题,一般采用测试法和类比法综合确定海上稠油油田蒸汽吞吐初期产量。由于目前海上油田通常只开展常规测试,无法直接获得热采开发初期产量。笔者提出海上稠油油田蒸汽吞吐初期产量确定新方法,建立蒸汽吞吐相对于常规开发的初期产量倍数预测模型,通过蒸汽吞吐产量倍数,将常规测试确定的产量转化为蒸汽吞吐产量。研究表明,蒸汽吞吐初期产量倍数主要受储集层渗透率、原油黏度、注入强度、蒸汽干度等因素影响,利用正交试验设计和多元回归等方法,建立海上稠油油田蒸汽吞吐初期产量倍数与油藏地质参数及注入参数之间的非线性预测模型,该模型经实际生产数据验证,预测误差小于5%,可靠性高,能够为海上稠油油田蒸汽吞吐初期产量的确定提供依据。     

煤样多元物性参数在煤与瓦斯突出防治中的应用研究

煤与瓦斯突出是一种复杂的动力现象，突出的类型不同、引起突出的危险因素不同，预测指标对其的敏感性也就不同，选择适应的突出危险性预测敏感指标及突出敏感指标的临界值，研究可靠的突出预测手段和方法来实现对突出危险性的准确预测，是指导突出防治工作的重要技术基础，而为了获得突出敏感指标的临界值就必须对煤的多元物性参数进行实验研究，掌握煤层的各项物化性质，是有效确定防治突出方法体系的关键基础。     

一种新型细旦帘子布的生产工艺研究

对新型细旦浸胶帘子布进行试生产。在试生产过程中，针对其高经密、高总经根数的特点，增加了整经工序，并在此基础上，对整经工艺、织造工艺及浸胶工艺进行探索，确定了该新型细旦浸胶帘子布的工艺参数。从试验结果来看，此次试生产达到了预期目标，并初步验证了在帘子布织造行业使用整经工序来开发生产高端细旦产品的优势，为开发高经密、高总经根数产品积累了初步经验。     

松河井田多煤层资源开发条件及合采储层伤害特征

为了降低煤层气井排采过程中的储层伤害,通过分析松河井田的资源开发条件及煤层气井排采数据,总结各排采阶段不合理排采控制引起的储层伤害特征,提出不同排采阶段合理的排采工艺对策。分析结果表明:松河井田煤层气资源丰度达到2.09×10^8m^3/km^2,煤层气资源开发条件较好;松河井田多煤层合层排采过程中,不合理排采控制工艺对煤层气井的产气量影响较大;排采初期以速敏伤害为主,排采中期以气锁和应力闭合伤害为主;修井作业及停抽期间,气锁效应及应力闭合对煤层造成伤害的可能性增大。合理的排采控制能够有效降低煤层气井的储层伤害,提高煤层气井产气量。     

基于目标级联技术的含风电互联电网机组组合策略

针对含风电互联电网日前安全约束机组组合的规模大、约束复杂、求解困难等问题,提出基于目标级联分析技术的分散协调优化策略。将问题分解为负责区域间边界节点电压相角协调的上层优化问题和以并行方式独立优化各区域发电计划的下层优化问题。下层优化以弃风电量期望和电量不足期望,量化各区域内风电、负荷预测误差,以及常规机组强迫停运等系统运行不确定性所带来的风险,并以罚函数的形式引入目标函数,以综合优化系统可靠性与经济性。2区域12节点系统和IEEE RTS96三区域互联系统算例仿真验证所建模型和算法的有效性。