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Prof. Tsung-Shing Andrew Wang Ruo-Yu Wu Yu Hong Dr. Zhe-Chong Wang Dr. Tsung-Lin Li Dr. Jiun-Jie Shie Prof. Cheng-Chih Hsu 《Chembiochem : a European journal of chemical biology》2021,22(14):2415-2419
Secondary metabolites are structurally diverse natural products (NPs) and have been widely used for medical applications. Developing new tools to enrich NPs can be a promising solution to isolate novel NPs from the native and complex samples. Here, we developed native and deuterated chemoselective labeling probes to target phenol-containing glycopeptides by the ene-type labeling used in proteomic research. The clickable azido-linker was included for further biotin functionalization to facilitate the enrichment of labeled substrates. Afterward, our chemoselective method, in conjunction with LC-MS and MSn analysis, was demonstrated in bacterial cultures. A vancomycin-related phenol-containing glycopeptide was labeled and characterized by our labeling strategy, showing its potential in glycopeptide discovery in complex environments. 相似文献
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Computer‐Interpretable Guidelines (CIGs) are the dominant medium for the delivery of clinical decision support, given the evidence‐based nature of their source material. Therefore, these machine‐readable versions have the ability to improve practitioner performance and conformance to standards, with availability at the point and time of care. The formalisation of Clinical Practice Guideline knowledge in a machine‐readable format is a crucial task to make it suitable for the integration in Clinical Decision Support Systems. However, the current tools for this purpose reveal shortcomings with respect to their ease of use and the support offered during CIG acquisition and editing. In this work, we characterise the current landscape of CIG acquisition tools based on the properties of guideline visualisation, organisation, simplicity, automation, manipulation of knowledge elements, and guideline storage and dissemination. Additionally, we describe the CompGuide Editor, a tool for the acquisition of CIGs in the CompGuide model for Clinical Practice Guidelines that also allows the editing of previously encoded guidelines. The Editor guides the users throughout the process of guideline encoding and does not require proficiency in any programming language. The features of the CIG encoding process are revealed through a comparison with already established tools for CIG acquisition. 相似文献
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Dr. Emrah Kara Dr. Nis Valentin Nielsen Bergrun Eggertsdottir Dr. Bernd Thiede Dr. Sandip M. Kanse Dr. Geir Åge Løset 《Chembiochem : a European journal of chemical biology》2020,21(13):1875-1884
We describe a novel, easy and efficient combinatorial phage display peptide substrate-mining method to map the substrate specificity of proteases. The peptide library is displayed on the pVII capsid of the M13 bacteriophage, which renders pIII necessary for infectivity and efficient retrieval, in an unmodified state. As capture module, the 3XFLAG was chosen due to its very high binding efficiency to anti-FLAG mAbs and its independency of any post-translational modification. This library was tested with Factor-VII activating protease (WT-FSAP) and its single-nucleotide polymorphism variant Marburg-I (MI)-FSAP. The WT-FSAP results confirmed the previously reported Arg/Lys centered FSAP cleavage site consensus as dominant, as well as reinforcing MI-FSAP as a loss-of-function mutant. Surprisingly, rare substrate clones devoid of basic amino acids were also identified. Indeed one of these peptides was cleaved as free peptide, thus suggesting a broader range of WT-FSAP substrates than previously anticipated. 相似文献
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Paweł Lula Octavian Dospinescu Daniel Homocianu Napoleon-Alexandru Sireteanu 《计算机、材料和连续体(英文)》2021,66(3):2425-2443
Our primary research hypothesis stands on a simple idea: The evolution of top-rated publications on a particular theme depends heavily on the progress and maturity of related topics. And this even when there are no clear relations or some concepts appear to cease to exist and leave place for newer ones starting many years ago. We implemented our model based on Computer Science Ontology (CSO) and analyzed 44 years of publications. Then we derived the most important concepts related to Cloud Computing (CC) from the scientific collection offered by Clarivate Analytics. Our methodology includes data extraction using advanced web crawling techniques, data preparation, statistical data analysis, and graphical representations. We obtained related concepts after aggregating the scores using the Jaccard coefficient and CSO Ontology. Our article reveals the contribution of Cloud Computing topics in research papers in leading scientific journals and the relationships between the field of Cloud Computing and the interdependent subdivisions identified in the broader framework of Computer Science. 相似文献
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ABSTRACT Many planning agencies worldwide now see climate change response as unavoidable. This paper proposes that a central task for contemporary planning theory is to guide planning practice as it develops multi-dimensional responses. We examine three theoretical constructs: anticipatory governance, legitimacy and social-ecological resilience. We argue that each conceptualises challenges climate change presents to planning practice, while providing theoretically informed options for responses. Building on this, we utilize Friedmann’s [2008. “The Uses of Planning Theory: A Bibliographic Essay.” Journal of Planning Education and Research 28 (2): 247–257. doi:10.1177/0739456X08325220] tasks for planning theory as a framework to assess the utility of planning theories to guide climate change response through practice. Associated issues are discussed, including the influence of translatable planning theories and the value of importing knowledge from other disciplines. The paper concludes that more sophisticated interplay between planning theory and practice may improve planning responses to the climate change threat. The need for planning theory to translate its conceptual discoveries to the domain of practice is key. 相似文献
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