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1.
Corey Andrews Yiting Xu Michael Kirberger Jenny J. Yang 《International journal of molecular sciences》2021,22(1)
Calmodulin (CaM) is an important intracellular protein that binds Ca2+ and functions as a critical second messenger involved in numerous biological activities through extensive interactions with proteins and peptides. CaM’s ability to adapt to binding targets with different structures is related to the flexible central helix separating the N- and C-terminal lobes, which allows for conformational changes between extended and collapsed forms of the protein. CaM-binding targets are most often identified using prediction algorithms that utilize sequence and structural data to predict regions of peptides and proteins that can interact with CaM. In this review, we provide an overview of different CaM-binding proteins, the motifs through which they interact with CaM, and shared properties that make them good binding partners for CaM. Additionally, we discuss the historical and current methods for predicting CaM binding, and the similarities and differences between these methods and their relative success at prediction. As new CaM-binding proteins are identified and classified, we will gain a broader understanding of the biological processes regulated through changes in Ca2+ concentration through interactions with CaM. 相似文献
2.
Franois Ancien Fabrizio Pucci Marianne Rooman 《International journal of molecular sciences》2021,22(9)
Sphingomyelin phosphodiesterase (SMPD1) is a key enzyme in the sphingolipid metabolism. Genetic SMPD1 variants have been related to the Niemann-Pick lysosomal storage disorder, which has different degrees of phenotypic severity ranging from severe symptomatology involving the central nervous system (type A) to milder ones (type B). They have also been linked to neurodegenerative disorders such as Parkinson and Alzheimer. In this paper, we leveraged structural, evolutionary and stability information on SMPD1 to predict and analyze the impact of variants at the molecular level. We developed the SMPD1-ZooM algorithm, which is able to predict with good accuracy whether variants cause Niemann-Pick disease and its phenotypic severity; the predictor is freely available for download. We performed a large-scale analysis of all possible SMPD1 variants, which led us to identify protein regions that are either robust or fragile with respect to amino acid variations, and show the importance of aromatic-involving interactions in SMPD1 function and stability. Our study also revealed a good correlation between SMPD1-ZooM scores and in vitro loss of SMPD1 activity. The understanding of the molecular effects of SMPD1 variants is of crucial importance to improve genetic screening of SMPD1-related disorders and to develop personalized treatments that restore SMPD1 functionality. 相似文献
3.
四川盆地蕴含丰富的致密砂岩气资源,近期利用高精度三维资料开展侏罗系沙溪庙组河道砂体勘探取得突出成效。沙溪庙组河道砂体具有横向变化快、储层非均质性强的特点,因此提高河道砂体的边界识别及其含气性预测精度是致密气地震勘探的关键。通过开展AVO特征低频保护的“六分法”(分类、分频、分时、分域、分步和分区)高保真叠前去噪、近地表Q补偿和OVT域叠前时间偏移等技术攻关,形成了一套针对川中地区侏罗系沙溪庙组致密气藏的“双高”(高保真、高分辨率)地震处理技术,并创新应用“双亮点”属性及多波、多分量砂体含气性地震预测等解释技术,提高了含气砂体预测精度。该技术系列在川中沙溪庙组致密气预测应用成果显著,地震数据频带得到了拓宽,低频信息更加丰富,资料信噪比明显提升,河道边界及其含气性预测的精度大幅提高,钻井成功率超过83%,应用成果有力地支撑了该地区沙溪庙组致密气的增储上产。 相似文献
4.
平台支持船由于作业需要通常配备有动力定位系统,其在侧推工况下舱室噪声超标较为严重。针对这个问题采用计算流体力学(CFD)方法,得到侧推螺旋桨作用在导管上的脉动压力,并将时域计算结果转换成噪声计算的激励条件。采用有限元(FE)与统计能量分析(SEA)混合方法建立船体中频段FE-SEA耦合模型并建立船体高频段SEA模型,对某65 m AHTS船侧推工况下全频段(63 Hz~8000 Hz)舱室噪声进行预报,分析该船噪声分布规律及主要影响因素。并建立起全船的SEA模型,在中频段对比SEA与FE-SEA两种方法得到的舱室声压级频谱曲线,验证了使用混合模型的必要性。 相似文献
5.
Reliable prediction of flooding conditions is needed for sizing and operating packed extraction columns. Due to the complex interplay of physicochemical properties, operational parameters and the packing-specific properties, it is challenging to develop accurate semi-empirical or rigorous models with a high validity range. State of the art models may therefore fail to predict flooding accurately. To overcome this problem, a data-driven model based on Gaussian processes is developed to predict flooding for packed liquid-liquid and high-pressure extraction columns. The optimized Gaussian process for the liquid-liquid extraction column results in an average absolute relative error (AARE) of 15.23 %, whereas the algorithm for the high-pressure extraction column results in an AARE of 13.68 %. Both algorithms can predict flooding curves for different packing geometries and chemical systems precisely. 相似文献
6.
7.
目的 提升老年人APP的用户体验水平。方法 提出一种基于Logistic回归的老年人APP用户体验优化设计研究方法。首先,通过文献研究和焦点小组法确定APP的设计模式,并选择合适的正交表确定设计模式的组合方式;其次,构建以行为体验、感知体验和情感体验为基础的用户体验评价体系,邀请被试者对试验样本执行具有代表性的任务,并对用户体验进行评价研究,收集试验数据;再次,运用序次Logistic回归建立APP设计模式与用户体验之间的关系模型,确定APP的最佳设计方案;最后,运用A/B测试方法对得到的试验结果进行验证。结论 以老年人移动医疗APP为例进行研究,结果表明所提出的方法可以有效地对老年人APP的用户体验进行优化设计,有助于设计师了解老年用户的偏好,设计出适合老年人使用的APP。 相似文献
8.
《Advanced Powder Technology》2022,33(11):103814
Flip-flow screening is an important method for classifying fine particles. The traditional research of flip-flow screening focuses on the final screening results, and neglects the screen-penetration process. However, the screen-penetration process directly affects the final screening effect. In this paper, a dynamic model of the flip-flow screen-penetration process was proposed and clarified the influence mechanism of main structural parameters on the screening process. First, based on theoretical derivation and regression fitting, the mathematical model of particle screen-penetration rate and screening time was established, and the dynamic evaluation index was obtained. Then, the effect of main structural parameters, namely, the excitation frequency, displacement excitation amplitude, and stretching amount of the screen plate, on the dynamic indexes, was explored. Furthermore, a quadratic polynomial model of the main structural parameters and the two-stage dynamic evaluation index were established by using the response surface method. The explicitness and interactivity of the effects of parameters were elucidated. This work is of great significance for the accurate control of the screening process. 相似文献
9.
Efficient electricity price forecasting plays a significant role in our society. In this paper, a novel influencer-defaulter mutation (IDM) mutation operator has been proposed. The IDM operator has been combined with six well-known optimization algorithms to create mutated optimization algorithms whose performance has been tested on twenty-four standard benchmark functions. Further, the artificial neural network is integrated with mutated optimization algorithms to solve the electricity price prediction problem. The policymakers can identify appropriate variables based on the predicted prices to help future market planning. The statistical results prove the efficacy of the IDM operator on the recent optimization algorithms. 相似文献
10.