VisComplete: automating suggestions for visualization pipelines

Building visualization and analysis pipelines is a large hurdle in the adoption of visualization and workflow systems by domain scientists. In this paper, we propose techniques to help users construct pipelines by consensus--automatically suggesting completions based on a database of previously created pipelines. In particular, we compute correspondences between existing pipeline subgraphs from the database, and use these to predict sets of likely pipeline additions to a given partial pipeline. By presenting these predictions in a carefully designed interface, users can create visualizations and other data products more efficiently because they can augment their normal work patterns with the suggested completions. We present an implementation of our technique in a publicly-available, open-source scientific workflow system and demonstrate efficiency gains in real-world situations.     

Querying and creating visualizations by analogy

While there have been advances in visualization systems, particularly in multi-view visualizations and visual exploration, the process of building visualizations remains a major bottleneck in data exploration. We show that provenance metadata collected during the creation of pipelines can be reused to suggest similar content in related visualizations and guide semi-automated changes. We introduce the idea of query-by-example in the context of an ensemble of visualizations, and the use of analogies as first-class operations in a system to guide scalable interactions. We describe an implementation of these techniques in VisTrails, a publicly-available, open-source system.     

Report of the Surgeon General's Workshop on Pornography and Public Health.

A panel of clinicians and researchers concluded that pornography does stimulate attitudes and behavior that lead to gravely negative consequences for individuals and for society, and that these outcomes impair the mental, emotional, and physical health of children and adults. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Modeling of transport and chemistry in channel flows of automotive catalytic converters

A novel comprehensive numerical study is presented for a better understanding of mass transfer in channel flows with catalytically active walls at moderate temperatures and surface reaction rates. Altogether, 18 different numerical models are compared, which represent mass transfer in single channels of a honeycomb-type automotive catalytic converter operated under direct oxidation conditions. Three different channel geometries have been investigated: circular cross-section, square cross-section, and square cross-section with rounded corners (fillets). 1D plug-flow, 2D boundary-layer and Navier–Stokes, and 3D Navier–Stokes equations are applied to model the reactor geometry. The diffusion limitation within the porous washcoat has been modeled by a simplified zero-dimensional effectiveness factor model as well as multidimensional reaction–diffusion models. Furthermore, simulations are also carried out for cases with instantaneous diffusion within the washcoat. All numerical models account for the coupled interactions of mass-transfer and heterogeneous chemistry within the channels. The chemical conversion of the pollutants on the platinum catalyst is described by an elementary-step-like heterogeneous reaction mechanism consisting of 74 reactions among 11 gas-phase species and 22 adsorbed surface species. The results of numerical simulations are compared with experimental data.     

Constant-gap spectrometer design for the electron/ion collider ELISe

For the study of electron-scattering off radioactive nuclei, the ELISe spectrometer will be constructed as a part of the Facility of Antiprotons and Ion Research (FAIR) in Darmstadt. A conceptional design of a spectrometer with a “clam-shell” gap was presented before. Here, we will present an improved design with a pre-deflector with a constant gap. Such a pre-deflector is not only simpler to construct but also provides larger angle acceptances in the forward-angle range compared to those with the “clam-shell” design.     

Hole Transport in Poly(phenylene vinylene)/Methanofullerene Bulk‐Heterojunction Solar Cells

A fundamental limitation of the photocurrent of solar cells based on a blend of poly(2‐methoxy‐5‐(3′,7′‐dimethyloctyloxy)‐p‐phenylene vinylene) (MDMO‐PPV) and [6,6]‐phenyl C₆₁‐butyric acid methyl ester (PCBM) is caused by the mobility of the slowest charge‐carrier species, the holes in the MDMO‐PPV. In order to allow the experimentally observed photocurrents electrostatically, a hole mobility of at least 10^–8 m² V^–1 s^–1 is required, which exceeds the observed hole mobility in pristine MDMO‐PPV by more than two orders of magnitude. However, from space‐charge‐limited conduction, admittance spectroscopy, and transient electroluminescence measurements, we found a hole mobility of 2 × 10^–8 m² V^–1 s^–1 for the MDMO‐PPV phase in the blend at room temperature. Consequently, the charge‐carrier transport in a MDMO‐PPV:PCBM‐based solar cell is much more balanced than previously assumed, which is a necessary requirement for the reported high fill factors of above 50 %.     

Stereoselective epoxidation of arachidonic acid by cytochrome P-450s 2CAA and 2C2

In the present study, we determined the stereoselective epoxidation of arachidonic acid by cytochrome P-450 (P-450) 2CAA and P-450 2C2, two arachidonic acid epoxygenases found in rabbit renal cortex, by chiral normal-phase high-performance liquid chromatography (HPLC)-analysis. Purified P-450 2CAA reconstituted with P-450 oxidoreductase, lipid and cytochrome b5 or microsomes isolated from COS-1 cells expressing P-450 2C2 were incubated in the presence of [1-14C]arachidonic acid. The epoxide metabolites 14,15- and 11,12-epoxyeicosatrienoic acids (EETs) were purified by reverse-phase HPLC and derivatized to methyl (14,15-EET) and pentafluorobenzyl (11,12-EET) esters. Enantiomers of 14,15-EET-methyl ester and 11,12-EET-pentafluorobenzyl ester were resolved on Chiralcel OB and OD columns, respectively, with a mobile phase of 0.15% 2-propanol in n-hexane. P-450 2CAA and P-450 2C2 produce 11,12- and 14,15-EETs in distinct ratios but are equally stereoselective at the 11,12-position. P-450 2CAA produced 11(S), 12(R)-EET with 63% stereoselectivity, and P-450 2C2 produced the same enantiomer with 61% stereoselectivity. Both enzymes are also stereoselective at the 14,15- position, preferentially producing the 14(R), 15(S)-EET. P-450 2CAA produces this enantiomer with 72% selectivity, and P-450 2C2 produces it with 62% selectivity. The results of this study indicate that P-450 2CAA and P-450 2C2 are not only regioselective but also exhibit a high degree of stereoselectivity.