A novel ACO–GA hybrid algorithm for feature selection in protein function prediction

Protein function prediction is an important problem in functional genomics. Typically, protein sequences are represented by feature vectors. A major problem of protein datasets that increase the complexity of classification models is their large number of features. Feature selection (FS) techniques are used to deal with this high dimensional space of features. In this paper, we propose a novel feature selection algorithm that combines genetic algorithms (GA) and ant colony optimization (ACO) for faster and better search capability. The hybrid algorithm makes use of advantages of both ACO and GA methods. Proposed algorithm is easily implemented and because of use of a simple classifier in that, its computational complexity is very low. The performance of proposed algorithm is compared to the performance of two prominent population-based algorithms, ACO and genetic algorithms. Experimentation is carried out using two challenging biological datasets, involving the hierarchical functional classification of GPCRs and enzymes. The criteria used for comparison are maximizing predictive accuracy, and finding the smallest subset of features. The results of experiments indicate the superiority of proposed algorithm.     

Attitude of Iranian physicians and nurses toward a clinical decision support system for pulmonary embolism and deep vein thrombosis

This research project sought to design and implement a computerized clinical decision support system (CDSS) that was able to identify patients who were at risk of pulmonary embolism (PE) and deep vein thrombosis (DVT), as well as produce reminders for prophylactic action for these diseases. The main purpose of the CDSS was to attempt to reduce the morbidity and mortality caused by embolism and thrombosis in patients admitted to hospitals. After implementation of this system in one of the large educational hospitals of Iran, a standard questionnaire was used, and interviews were conducted with physicians and nurses to evaluate the performance of the designed system for reducing the incidence of pulmonary embolism and thrombosis. From physicians and nurses’ point of view, a system which assists the medical staff in making better decisions regarding patient care, and also reminds pulmonary embolism and thrombosis preventive procedures with timely warnings, can influence patient care quality improvement and lead to the improved performance of the medical staff in preventing the incidence of pulmonary embolism and thrombosis.     

Investigation of Hydrodynamics of High‐Temperature Fluidized Beds by Pressure Fluctuations

Hydrodynamics of a gas‐solid fluidized bed at elevated temperatures was investigated by analyzing pressure fluctuations in time and frequency domains. Sand particles were fluidized with air at various bed temperatures. At a constant gas velocity, the standard deviation, power spectrum density function, and wide‐band energy of pressure fluctuations reach a maximum at 300 °C. Increasing the temperature to this value causes larger bubble sizes and after the bubbles reach their maximum size, they break into smaller bubbles. The Archimedes number decreases with higher temperature and the type of fluidization becomes closer to that of Geldart A boundary at this maximum temperature. Based on estimation of the drag force acting on the emulsion phase, it was concluded that 300 °C was a transition temperature at which the drag force reaches a minimum due to a significant change of interparticle and hydrodynamic forces.     

Controlled release of fluorouracil (5-FU) from chitosan-co-poly(ethylene glycol)/ poly(glycerol sebacate)-co-poly(ethylene glycol)-coated iron oxide

A blend of polyglycerol sebacate-poly ethylene glygol/chitosan-poly ethylene glycol-coated iron oxide (PGS-PEG/CS-PEG@Fe₃O₄) nanoparticles for 5FU delivery was prepared by reverse ultrasonic emulsification method. To enhance polymers’ solubility, PEG was grafted. Chemical characterization was performed through Fourier transformed infrared and proton nuclear magnetic resonance spectra. In vitro assay revealed that release profile of 5FU-loaded PGS-PEG/CS-PEG@Fe₃O₄ is sustained. Moreover, cytotoxicity was analyzed on HT29 cell line at the presence of external magnetic field using the lactate dehydrogenase and Alamar Blue. Results illustrate that (PGS-PEG/CS-PEG@Fe₃O₄) is promising to use as a carrier for 5FU anticancer agent with sustained tailored release.     

Microparticles containing erlotinib-loaded solid lipid nanoparticles for treatment of non-small cell lung cancer

Non-small cell lung cancer (NSCLC) patients with sensitizing mutations in the exons 18–21 of the epithelial growth factor receptor (EGFR) gene show increased kinase activity of EGFR. Hence, tyrosine kinase inhibitors (TKIs) such as erlotinib (ETB) have commonly been used as the second line therapeutic option for the treatment of metastatic NSCLC. While the ETB is available as an oral dosage form, the local delivery of this TKI to the diseased cells of the lung may ameliorate its therapeutic impacts. In the current study, we report on the development of ETB-loaded solid lipid nanoparticle (SLN) based formulation of dry powder inhaler (ETB-SLN DPI). ETB-SLNs were formulated using designated amount of compritol/poloxamer 407. The engineered ETB-SLNs showed sub-100?nm spherical shape with an encapsulation efficiency of 78.21%. MTT assay and DAPI staining revealed that the ETB-SLNs enhanced the cytotoxicity of cargo drug molecules in the human alveolar adenocarcinoma epithelial A549 cells as a model for NSCLC. To attain the ETB-SLN DPI, the ETB-SLNs were efficiently spray dried into microparticles (1–5?μm) along with mannitol. The ETB-SLN DPI powder displayed suitable flowability and aerodynamic traits. The Carr's Index, Hausner ratio and Next Generation Impactor (NGI) analyses confirmed deep inhalation pattern of the formulation. Based on these findings, we propose the ETB-SLN DPI as a promising treatment modality for the NSCLC patients.     

An efficient extraction and clean‐up procedure for pesticide determination in olive oil

This work reports a simple, rapid, and effective extraction method based on liquid–liquid extraction (LLE) followed by matrix solid‐phase dispersion‐sonication for detection, identification and quantification of multiclass pesticides in virgin olive oil using liquid chromatography mass spectrometry (LC‐QTOF‐MS). LLE to extract pesticide residues in virgin olive oil was performed in order to study the centrifugation efficiency to obtain high recovery yield and low co‐extract fat residue in the final extract. Different suitable parameters of MSPD procedure were evaluated, such as nature of dispersing phase, clean‐up adsorbent, and volume of eluting solvent (acetonitrile) in different extraction conditions, with or without sonication. The best results were obtained using 5 g of virgin olive oil, 2 g of PSA as dispersant sorbent, 2 g of Florisil/GCB (70:30 w/w) as clean‐up sorbent, and 15 mL of acetonitrile as eluting solvent under conditions of 15 min ultrasonic bath at RT. Method validation was performed in order to study sensitivity, linearity, precision, and accuracy. Average recoveries ranged between 73.7 and 104.2% with relative SDs 5.3–13.4% at three concentration levels (25, 50, and 100 µg/kg). Detection and quantification limits ranged from 1.5 to 5 µg/kg and 3 to 9 µg/kg, respectively.     

Simultaneous biodesulphurization and denitrification using an oil reservoir microbial culture: Effects of sulphide loading rate and sulphide to nitrate loading ratio

Biooxidation of sulphide under denitrifying conditions is a key process in control of souring in oil reservoirs and in treatment of gas and liquids contaminated with sulphide and nitrate. In this work, biooxidation of sulphide was studied using a representative culture originated from an oil reservoir. Effects of sulphide concentration, sulphide to nitrate molar ratio, and loading rates of sulphide and nitrate on their removal rates and composition of the end products were investigated. In the batch system sulphide removal rate passed through a maximum as sulphide concentration was increased from 2.1 to 16.3 mM, with the highest rate (2.06 mM h⁻¹) observed with 10.7 mM sulphide. Nitrate removal was coupled to sulphide oxidation and the highest removal rate was 1.05 mM h⁻¹. In the continuous bioreactors fed with 10 and 5, 15 and 7.5, and 20 and 10 mM sulphide and nitrate, cell wash-out occurred as dilution rate was increased above 0.15, 0.13 and 0.08 h⁻¹, respectively. Prior to cell wash-out linear increases in sulphide and nitrate removal rates were observed as loading rate was increased. The highest sulphide and nitrate removal rates of 2.0 and 0.92 mM h⁻¹ were obtained in the bioreactor fed with 15 mM sulphide and 7.5 mM nitrate at loading rates of 2.1 and 0.93 mM h⁻¹, respectively. Short residence times and high sulphide to nitrate ratios promoted the formation of sulphur, a desired end product for ex situ treatment of contaminated streams. Combination of long residence times and low sulphide to nitrate ratios, which favours formation of sulphate, is the suitable strategy for in situ removal of H₂S from oil reservoirs.     

Microstructural and electrical properties of varistors prepared from coated ZnO nanopowders

This paper describes a solution-based technique for fabrication of varistor grade composite nanopowders. The method consists of coating major varistor dopants on the surface of the ZnO nanoparticles. As a result, a homogenous mixture of dopants and ZnO nanoparticles will be achieved. TEM results indicated that a composite layer of dopants with the average particle size of 9 nm on the surface of ZnO nanoparticles has been successfully prepared. Sintering of the coated powders was performed in temperatures as low as 850 °C and final specimens with average particle size of 900 nm and density of 98.5% were achieved. In comparison to conventional mixing, varistors prepared from coated nanopowders exhibited superior electrical properties and microstructure homogeneity. The improvement of electrical properties can be attributed to small grain size, homogenous distribution of dopants and elimination of large Bi-Pockets. In addition, the processing route of schottky barrier formation is quite different from what is generally considered as the method of barrier formation in ZnO grain boundaries.