Proteome analysis of tissues by mass spectrometry

Tissues and biofluids are important sources of information used for the detection of diseases and decisions on patient therapies. There are several accepted methods for preservation of tissues, among which the most popular are fresh‐frozen and formalin‐fixed paraffin embedded methods. Depending on the preservation method and the amount of sample available, various specific protocols are available for tissue processing for subsequent proteomic analysis. Protocols are tailored to answer various biological questions, and as such vary in lysis and digestion conditions, as well as duration. The existence of diverse tissue‐sample protocols has led to confusion in how to choose the best protocol for a given tissue and made it difficult to compare results across sample types. Here, we summarize procedures used for tissue processing for subsequent bottom‐up proteomic analysis. Furthermore, we compare protocols for their variations in the composition of lysis buffers, digestion procedures, and purification steps. For example, reports have shown that lysis buffer composition plays an important role in the profile of extracted proteins: the most common are tris(hydroxymethyl)aminomethane, radioimmunoprecipitation assay, and ammonium bicarbonate buffers. Although, trypsin is the most commonly used enzyme for proteolysis, in some protocols it is supplemented with Lys‐C and/or chymotrypsin, which will often lead to an increase in proteome coverage. Data show that the selection of the lysis procedure might need to be tissue‐specific to produce distinct protocols for individual tissue types. Finally, selection of the procedures is also influenced by the amount of sample available, which range from biopsies or the size of a few dozen of mm² obtained with laser capture microdissection to much larger amounts that weight several milligrams.     

Processing and storage effects on the oxidative stability of hemp (Cannabis sativa L.) oil‐in‐water emulsions

Hempseed oil was used to form oil‐in‐water emulsions, and the effect of heating, storage and light on the oxidative stability of the dispersed phase was investigated. Lipid oxidation rate increased following thermal processing and light exposure, whereas oxidation markers remained relatively unaffected during emulsions storage at 4 °C for 10 days. Induction times of the emulsions were reduced up to 26% and the concentration of thiobarbituric acid reactive substances increased up to 4.5‐fold, depending on the processing conditions. Selected berries as potential sources of natural antioxidants were screened for polyphenol and anthocyanin content in order to investigate their ability to retard lipid oxidation in comparison with a commercially available synthetic counterpart. Raspberry powder extract significantly improved the oxidative stability of hemp‐based emulsion compared with the control and was even more effective compared to a synthetic antioxidant when samples were subjected to heat treatment.     

The influence of Ni/Nd‐based Ziegler–Natta catalyst on microstructure configurations and properties of butadiene rubber

Neodymium (Nd)‐based Ziegler–Natta catalyst has been well known for preparing polybutadiene rubber (BR) containing high, about 98%, cis−1,4 configuration with extremely low gel content providing superior resistance to low‐temperature fatigue and abrasion. However, its cost is more expensive than a conventional nickel (Ni)‐based catalyst. The Nd‐BR has poor processability with high cold flow due to its high linearity and molecular weight. To compare with a traditional process, the BR produced by Ni‐based catalyst has higher level of branching resulting in the better processability, but it contains medium amount of gel. To balance the catalyst cost and the BR properties, this article reported the influence of a solution containing Ni‐ and Nd‐based Ziegler–Natta catalyst (Ni/Nd) using diethyl aluminum chloride and triethyl aluminum as co‐catalysts on 1,3‐butadiene (BD) conversion and physical properties of the elastomeric materials based on obtained rubber (Ni/Nd‐BR). In the presence of toluene, the increase in the Ni/Nd molar ratio from 0.0/1.0 to 0.4/0.6 yielded Ni/Nd‐BR containing cis−1,4 units of 95%–96% with significantly decreasing both levels of vinyl−1,2 and trans−1,4 configurations from 0.26% to 0.13% and 4.44% to 3.07%, respectively. When cyclohexane was applied as the reaction media, 100% BD conversion was achieved and the Ni/Nd‐BR had very low content of vinyl−1,2 unit (0.07%). The mechanical properties in terms of tensile properties and abrasion resistance of the elastomer based on Ni/Nd‐BR having high cis‐1,4 and relatively higher trans−1,4 configurations were superior to elastomers based on commercial BRs produced by using Ni‐ and Nd‐based catalyst systems. © 2015 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2015 , 132, 41834.     

Predicting compliance of children with and without developmental delay.

Noncompliance is a common problem exhibited by children with developmental delay (DD; Walker, 1993). The authors evaluated whether performance on the Assessment of Basic Learning Abilities (ABLA) test would predict compliance of children with and without DD to instructions alone (IA) versus instructions with modelling and/or gestures (IMG) administered by their caregivers. The ABLA test uses standard prompting and reinforcement procedures to assess the ease or difficulty with which a testee is able to learn a simple imitation and five two-choice discriminations. Twenty-one children without DD and 16 children with DD were presented with five age-appropriate educational tasks by their respective caregivers in a structured teaching session that included IA on some trials and IMG on others. The ABLA test performance reliably predicted the compliance of the children in the two conditions, and the results were consistent across both groups. The results are important for providing information to caregivers on how best to instruct their children in an effort to increase compliance. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Kinetics of the Syntheses of Mesityl Oxide (MO) and Methyl Isobutyl Ketone (MIBK) in a Fixed-Bed Flow Reactor (FBR)

Nb₂O₅/SiO₂ and Pd/Nb₂O₅/SiO₂ catalysts were studied for the liquid phase syntheses of mesityl oxide (MO) and methyl isobutyl ketone (MIBK) in a fixed bed flow reactor (FBR). Catalyst activities as high as 1.7 g/h g_cat and selectivities ranging from 93.4 to 100% for MO synthesis were observed. The catalyst activity was found to be a strong function of space velocity likely due to product inhibition. A synergistic effect was observed whereby the catalyst activity for all organic products increased by 22% and the MIBK productivity increased by 20% at 160 °C and WHSV = 8.6 h^?1 from the introduction of hydrogen to the reactor. However, the MIBK selectivity was constrained to less than 83.5% due to competing reactions.     

Minimization of free radical damage by metal catalysis of multivitamin/multimineral supplements

Multivitamin/multimineral complexes are the most common dietary supplements. Unlike minerals in foods that are incorporated in bioorganic structures, minerals in dietary supplements are typically in an inorganic form. These minerals can catalyze the generation of free radicals, thereby oxidizing antioxidants during digestion. Here we examine the ability of a matrix consisting of an amino acid and non-digestible oligosaccharide (AAOS) to blunt metal-catalyzed oxidations. Monitoring of ascorbate radical generated by copper shows that ascorbate is oxidized more slowly with the AAOS matrix than with copper sulfate. Measurement of the rate of oxidation of ascorbic acid and Trolox^® by catalytic metals confirmed the ability of AAOS to slow these oxidations. Similar results were observed with iron-catalyzed formation of hydroxyl radicals. When compared to traditional forms of minerals used in supplements, we conclude that the oxidative loss of antioxidants in solution at physiological pH is much slower when AAOS is present.