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强相关树基因选择方法及AE-RSVM分类研究
引用本文:张 岩,闫德勤,吕志超,郑宏亮.强相关树基因选择方法及AE-RSVM分类研究[J].计算机工程与应用,2013,49(17):245-249.
作者姓名:张 岩  闫德勤  吕志超  郑宏亮
作者单位:辽宁师范大学 计算机与信息技术学院,辽宁 大连 116081
摘    要:对肿瘤基因表达谱进行分析,从而有效区分正常样本与肿瘤样本的关键是:准确找出能够决定样本类别的最少特征基因,并用一个性能较好的分类器进行分类预测。针对该问题,用修订的特征记分准则(RFSC)去除分类无关基因;对两两冗余法进行改进,提出强相关树法用于冗余基因的去除;对粗糙支持向量机(RSVM)改进,提出近似等价粗糙支持向量机(AE-RSVM)对样本集进行分类测试。以肿瘤样本集为例进行测试,实验结果表明了提出方法的可行性和有效性。

关 键 词:基因表达谱  肿瘤分类  基因选择  支持向量机  等价类  

Strong correlative tree for gene selection and AE-RSVM for classification
ZHANG Yan,YAN Deqin,LV Zhichao,ZHENG Hongliang.Strong correlative tree for gene selection and AE-RSVM for classification[J].Computer Engineering and Applications,2013,49(17):245-249.
Authors:ZHANG Yan  YAN Deqin  LV Zhichao  ZHENG Hongliang
Affiliation:School of Computer and Information Technology, Liaoning Normal University, Dalian, Liaoning 116081, China
Abstract:The key of distinguishing between normal and tumor samples effectively for tumor gene expression data is to find out the fewest genes which can predict the classes, then use a good performance classifier to classify. Faced with the problem, it uses the Revised Feature Score Criterion(RFSC) to remove the genes irrelevant to the classification task. It improves the pair-wise redundancy method, proposes strong correlative tree to filter the redundant gene. It improves the Rough Support Vector Machine(RSVM) and proposes the Approximate Equivalence Rough Support Vector Machine(AE-RSVM), and then validates classification for data sets. Using the tumor data set to test, the experimental results show the feasibility and effectiveness of the method proposed in this paper.
Keywords:gene expression profile  tumor classification  gene selection  support vector machine  equivalence class  
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