Prediction of DNA-binding regulatory proteins in bacteriophage T7

The high-resolution structure of several specific DNA-bindingproteins have been determined, and they display a common structuralmotif which mediates their binding to DNA. This motif consistsof two -helices connected by a sharp turn, and its amino acidsequence has several distinguishing features. A computer searchof the proteins coded by the genome of bacteriophage T7 hasbeen performed in an attempt to identify those proteins thatpotentially contain this motif. Eight proteins were found tohave regions similar to that of the motif. Of these, three arerelatively small, have no known function and are good candidatesfor being DNA-binding regulatory proteins. The methods describeduse commonly available computer programs and databases, andare therefore easy to implement.