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利用灰度纹理分析方法识别蛋白质空间结构
引用本文:施建宇,雷朝霞,方智裕.利用灰度纹理分析方法识别蛋白质空间结构[J].计算机工程与应用,2011,47(20):151-154.
作者姓名:施建宇  雷朝霞  方智裕
作者单位:1. 西北工业大学生命科学院,西安,710072
2. 鄱阳县第一中学计算机教研组,江西上饶,333100
3. 鄱阳县广播电视台多媒体管理中心,江西上饶,333100
基金项目:国家自然科学基金,中国博士后科学基金
摘    要:蛋白质三维空间结构固有的复杂性给其结构分类带来了较大的困难。将蛋白质空间结构映射成为二维距离矩阵,并进一步视作灰度纹理图像,使用拉冬变换分析了该图像的纹理方向特性,基于灰度共生矩阵和Radon投影矩阵提出了一种低维的蛋白质结构特征提取方法。实验结果与对比表明,该方法不仅具有低维的特征,而且有效地实现了多类蛋白质结构分类识别。

关 键 词:距离矩阵  灰度共生矩阵  拉冬变换  支持向量机  特征提取
修稿时间: 

Spatial structure recognition of protein based on gray texture analysis
SHI Jianyu,LEI Zhaoxia,FANG Zhiyu.Spatial structure recognition of protein based on gray texture analysis[J].Computer Engineering and Applications,2011,47(20):151-154.
Authors:SHI Jianyu  LEI Zhaoxia  FANG Zhiyu
Affiliation:1.School of Life Science,Northwestern Polytechnical University,Xi’an 710072,China 2.Group of Computer Science,No.1 High School of Poyang,Shangrao,Jiangxi 333100,China 3.Administration of Multimedia,Broadcasting Station of Poyang,Shangrao,Jiangxi 333100,China
Abstract:The intrinsic complexity of Protein Spatial Structure(PSS) brings a heavy difficulty to its structural classification. In this paper,PSS is mapped into 2-D distance matrix and further regarded as texture image of which textural directions are detected by Radon transform.Consequently, a novel method of feature extraction of PSS with low dimension is proposed based on gray level co-occurrence matrix and Radon transform project matrix.The experiments and the comparison results demonstrate that the presented method can not only product low-dimensional feature and also achieve effective classification of PSS.
Keywords:distance matrix  gray level co-occurrence matrix  Radon transform  support vector machines  feature extraction  
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