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基于容错机制的精细药物分子对接网格
引用本文:卢桂艳,郭权.基于容错机制的精细药物分子对接网格[J].计算机工程,2010,36(19):285-287.
作者姓名:卢桂艳  郭权
作者单位:1. 大连民族学院计算机学院,辽宁,大连,116600
2. 大连东软信息学院计算机系,辽宁,大连,116024
基金项目:国家"863"计划基金资助项目,国家自然科学基金资助项目 
摘    要:针对药物分子对接的搜索空间大、耗费时间长、对计算环境要求高等问题,给出一种将网格技术应用于药物分子对接的方案。基于遗传算法多种群竞争机制的对接演化模型GasDock,以信息熵控制空间的收缩,增强进化的目的性,提高对接效率。提出局部类树型结构及结点失效的容错机制,提高了精细药物分子对接任务的效率及容错性。测试结果证明了精细药物分子对接与网格技术相结合的合理性和有效性。

关 键 词:分子对接  配体  容错机制  信息熵

Refined Medicine Molecule Docking Grid Based on Error-tolerance Mechanism
LU Gui-yan,GUO Quan.Refined Medicine Molecule Docking Grid Based on Error-tolerance Mechanism[J].Computer Engineering,2010,36(19):285-287.
Authors:LU Gui-yan  GUO Quan
Affiliation:(1. School of Computer, Dalian Nationality University, Dalian 116600, China; 2. Computer Department, Dalian Neusoft Institute of Information, Dalian 116024, China)
Abstract:This paper presents a solution of medicine molecular docking combined with grid techniques to solve problems such as too big searching space,too much docking time and too complicated computing environment.Based on GAsDock--a docking evolvement model for multi-population competition mechanism of GA,and uses informational entropy,this paper controls the space narrowing,improves the evolutional reasonability and docking efficiency.Then local tree-structure and error-tolerance mechanism are provided.The docking time is reduced and the grid resources are used more efficiently.Text results show that the combination of refined medicine molecular docking design and grid techniques are reasonable and efficient.
Keywords:molecule docking  ligand  error-tolerance mechanism  informational entropy
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