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Heterogeneous Distribution of Computations Solving Linear Algebra Problems on Networks of Heterogeneous Computers
Affiliation:1. Diabetes Epidemiology and Clinical Research Section, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, 1550 East Indian School Road, Phoenix, AZ 85014, United States;2. Center for Genes, Environment, and Health, Department of Biomedical Research, National Jewish Health, 1400 Jackson Street, Denver, CO 80206, United States;3. Diabetes, Cardiovascular and Metabolic Diseases Division, Translational Genomics Research Institute, 445 Fifth Street, Phoenix, AZ 85004, United States;4. South Texas Diabetes and Obesity Institute (STDOI), University of Texas Rio Grande Valley (UTRGV) School of Medicine, 2700 E. Jackson St. Brownsville, TX 78520; 1214 W. Schunior Street, Edinburgh, TX 78541; 3463 Magic Drive San Antonio, TX 78229, United States;5. Departments of Medicine and Cellular & Structural Biology, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States
Abstract:This paper presents and analyzes two different strategies of heterogeneous distribution of computations solving dense linear algebra problems on heterogeneous networks of computers. The first strategy is based on heterogeneous distribution of processes over processors and homogeneous block cyclic distribution of data over the processes. The second is based on homogeneous distribution of processes over processors and heterogeneous block cyclic distribution of data over the processes. Both strategies were implemented in the mpC language—a dedicated parallel extension of ANSI C for efficient and portable programming of heterogeneous networks of computers. The first strategy was implemented using calls to ScaLAPACK; the second strategy was implemented with calls to LAPACK and BLAS. Cholesky factorization on a heterogeneous network of workstations is used to demonstrate that the heterogeneous distributions have an advantage over the traditional homogeneous distribution.
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