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Compatibility of unrooted phylogenetic trees is FPT
Authors:David Bryant  Jens Lagergren
Affiliation:1. McGill Centre for Bioinformatics, Montreal, Que., Canada;2. Stockholm Bioinformatics Center and Department of Numerical Analysis and Computer Science, KTH, Stockholm, Sweden
Abstract:A collection of T1,T2,…,TkT1,T2,,Tk of unrooted, leaf labelled (phylogenetic) trees, all with different leaf sets, is said to be compatible   if there exists a tree TT such that each tree TiTi can be obtained from TT by deleting leaves and contracting edges. Determining compatibility is NP-hard, and the fastest algorithm to date has worst case complexity of around Ω(nk)Ω(nk) time, nn being the number of leaves. Here, we present an O(nf(k))O(nf(k)) algorithm, proving that compatibility of unrooted phylogenetic trees is fixed parameter tractable   (FPT) with respect to the number kk of trees.
Keywords:
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