首页 | 本学科首页   官方微博 | 高级检索  
     

基于SNP实验流程的信息管理系统
引用本文:李罡,黄懿,戢茜,袁一,吴坚,王超,郭景康,王健. 基于SNP实验流程的信息管理系统[J]. 计算机与应用化学, 2007, 24(8): 1085-1091
作者姓名:李罡  黄懿  戢茜  袁一  吴坚  王超  郭景康  王健
作者单位:上海大学生物信息研究中心,上海,200444
摘    要:针对研究单核苷酸多态性(SNP)分子生物实验的特点和需求,利用Java技术开发一套基于SNP实验流程的,并且集成TaqMan、Sequencing、Illumina 3个实验平台数据的实验室信息管理系统。系统为B/S体系,采用基于MVC(Model-View-Con- troller)模式的J2EE架构,层次清晰、界面友好、使用方便、支持多用户同时在线操作,且可跨操作系统平台(Windows/Linux/ Unix)运行。本文简要介绍系统的设计思路、体系架构、实现过程和主要功能。本系统实现了实验室数据的收集、存储、整合、查询,提高实验室的工作效率和管理水平,可为今后分子生物学、化学、医学以及其他实验学科的实验室信息管理系统的建设提供参考。

关 键 词:实验室信息管理系统  单核苷酸多态性  Java
文章编号:1001-4160(2007)08-1085-1091
修稿时间:2007-02-08

Information management system based on single nucleotide polymorphisms experiment workflow
Li Gang,Huang Yi,Ji Qian,Yuan Yi,Wu Jian,Wang Chao,Guo Jingkang,Wang Jian. Information management system based on single nucleotide polymorphisms experiment workflow[J]. Computers and Applied Chemistry, 2007, 24(8): 1085-1091
Authors:Li Gang  Huang Yi  Ji Qian  Yuan Yi  Wu Jian  Wang Chao  Guo Jingkang  Wang Jian
Affiliation:Bioinformatics Center, Shanghai University, Shanghai, 200444, China
Abstract:Modem molecular biology labs doing SNP (Single Nucleotide Polymorphism) related research are confronted with the task of managing and integrating data from multiple sources generated by various experiment platforms.To meet their needs,we developed a java-based LIMS (Laboratory Information Management System) that manages data from TaqMan,Illumina and sequencing platforms.It is a multi-user B/S system with J2EE architecture based on MVC (Model-View-Controller) model that supports multiple OS platforms (Windows/Linux/Unix).This LIMS proves to help SNP labs to collect,store,manage,integrate,and search data effectively.This article describes the software and its design,implementation and main functions.These details may provide valuable information and shed light on the development and implementation of future LIMS targeted at other types of laboratories conducting biological,chemical or medical experiments.
Keywords:LIMS (laboratory information management system)  SNP (single nucleotide polymorphism)  Java
本文献已被 CNKI 维普 万方数据 等数据库收录!
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号