Large wood addition for aquatic habitat rehabilitation in an incised,sand‐bed stream,Little Topashaw Creek,Mississippi

Large wood (LW) is a key component of stream habitats, and degraded streams often contain little wood relative to less‐impacted ones. Habitat rehabilitation and erosion control techniques that emphasize addition of natural wood in the form of individual elements or structures are increasingly popular. However, the efficacy of wood addition, especially in physically unstable, warmwater systems is not well established. The effects of habitat rehabilitation of Little Topashaw Creek, a sinuous, sand‐bed stream draining 37 km² in northwest Mississippi are described herein. The rehabilitation project consisted of placing 72 LW structures along eroding concave banks of a 2‐km reach and planting 4000 willow cuttings in sandbars opposite or adjacent to the LW structures. Response was measured by monitoring flow, channel geometry, physical aquatic habitat and fish populations in treated and untreated reaches for 2 years before and 4 years after rehabilitation. Initially, LW structures reduced high flow velocities at concave bank toes. Progressive failure of the LW structures and renewed erosion began during the second year after rehabilitation, with only 64% of the structures and about 10% of the willow plantings surviving for 3 years. Accordingly, long‐term changes in physical habitat attributable to rehabilitation were limited to an increase in LW density. Fish biomass increased in the treated reach, and species richness approximately doubled in all reaches after rehabilitation, suggesting the occurrence of some sort of stressful event prior to our study. Fish community composition shifted toward one typical of a lightly degraded reference site, but similar shifts occurred in the untreated reaches downstream, which had relatively high levels of naturally occurring LW. Large wood is a key component of sand‐bed stream ecosystems, but LW addition for rehabilitation should be limited to sites with more stable beds and conditions that foster rapid woody plant colonization of sediment deposits. Published in 2006 by John Wiley & Sons, Ltd.     

The introduction of woody debris into a channelized stream: effect on trout populations and habitat

Large woody debris was explored as a method of restructuring channelized streams to improve salmonid habitat. Whole trees were inserted in sections along a 2 km reach of a channelized stream to determine if large woody debris: (1) increased the abundance and biomass of brown (Salmo trutta) and rainbow trout (Oncorhynchus mykiss); (2) had an effect on physical habitat features; and (3) provided trouts with additional habitat. Trout populations and stream morphology were monitored before and after the introduction of woody debris and compared to control sections lacking woody debris. Abundance and biomass of both brown and rainbow trout increased in the treatment section compared to the control. Maximum and standard deviation of fish total length increased in all sections during summer months. The number of individuals and the standard deviations of total lengths decreased in the control section in winter, but increased in the treatment section. Mean water velocities decreased and number and volume of pools increased in treatment sections. Brown and rainbow trouts sought woody debris structures for cover. We conclude that large woody debris can serve as a method of reconstructing channelized streams to improve salmonid habitat. Copyright © 2002 John Wiley & Sons, Ltd.     

Effects of large woody debris on surface structure and aquatic habitat in forested streams,southern interior British Columbia,Canada

It is well known that large woody debris (LWD) plays an important functional role in aquatic organisms' life. However, the influence of LWD on channel morphology and aquatic environments at watershed levels is still unclear. The relationships between wood and surface structure and aquatic habitat in 35 first through fifth order streams of southern interior British Columbia were investigated. Study streams in the channel networks of the study watersheds were classified into four size categories based on stream order and bankfull width: Stream size I: bankfull width was less than 3 m, Stream size II: 3–5 m, Stream size III: 5–7 m, Stream size IV: larger than 7 m. We found the number of functional pieces increased with stream size and wood surface area in stream sizes I, II and III (24, 28 and 25 m²/100 m², respectively) was significantly higher than that in stream size IV (12 m²/100 m²). The contribution of wood pieces to pool formation was 75% and 85% in stream sizes II and III, respectively, which was significantly higher than those in stream size I (50%) and size IV (25%). Between 21% and 25% of wood pieces were associated with storing sediment, and between 20% and 29% of pieces were involved in channel bank stability in all study streams. Due to long‐term interactions, LWD in the intermediate sized streams (Size II and III) exhibited much effect on channel surface structure and aquatic habitats in the studied watersheds. Copyright © 2008 John Wiley & Sons, Ltd.     

Impact of a 100‐year flood on vegetation,benthic invertebrates,riparian fauna and large woody debris standing stock in an alpine floodplain

This paper investigates the impact of a 100‐year flood in May 1999 on community composition and large woody debris standing stock in an alpine floodplain (Isar, Germany). Detailed pre‐flood data sampled from 1993 to 1998 are compared with the situation directly after the flood. In those parts of the Isar floodplain mainly covered with pioneer vegetation prior to flooding, the coverage of unvegetated gravel bars increased by 22% following the flood. However, the flood did not remove larger amounts of older successional vegetation stages (willow thickets, floodplain forest). No significant changes in the benthic invertebrate fauna were recorded. The lowest densities of riparian ground beetles (Carabidae) within the study were recorded one month after the flood. Two months later, the ground beetle densities increased to the highest values ever recorded, indicating the ground beetle's high potential for recolonization. These results highlight the degree of resilience of both the aquatic and the riparian invertebrate fauna. The flood also caused a significant increase in large woody debris standing stock; in one section the number of logs increased tenfold and the volume increased by a factor of 20, leading to the assumption that most woody debris in alluvial flood‐plains is provided by catastrophic events. Copyright © 2004 John Wiley & Sons, Ltd.     

Experimental reintroduction of woody debris on the Williams River,NSW: geomorphic and ecological responses

A total of 436 logs were used to create 20 engineered log jams (ELJs) in a 1.1 km reach of the Williams River, NSW, Australia, a gravel‐bed river that has been desnagged and had most of its riparian vegetation removed over the last 200 years. The experiment was designed to test the effectiveness of reintroducing woody debris (WD) as a means of improving channel stability and recreating habitat diversity. The study assessed geomorphic and ecological responses to introducing woody habitat by comparing paired test and control reaches. Channel characteristics (e.g. bedforms, bars, texture) within test and control reaches were assessed before and after wood placement to quantify the morphological variability induced by the ELJs in the test reach. Since construction in September 2000, the ELJs have been subjected to five overtopping flows, three of which were larger than the mean annual flood. A high‐resolution three‐dimensional survey of both reaches was completed after major bed‐mobilizing flows. Cumulative changes induced by consecutive floods were also assessed. After 12 months, the major geomorphologic changes in the test reach included an increase in pool and riffle area and pool depth; the addition of a pool–riffle sequence; an increase by 0.5–1 m in pool–riffle amplitude; a net gain of 40 m³ of sediment storage per 1000 m² of channel area (while the control reach experienced a net loss of 15 m³/1000 m² over the same period); and a substantial increase in the spatial complexity of bed‐material distribution. Fish assemblages in the test reach showed an increase in species richness and abundance, and reduced temporal variability compared to the reference reach, suggesting that the changes in physical habitat were beneficial to fish at the reach scale. Copyright © 2004 John Wiley & Sons, Ltd.     

Post‐flooding distribution and characteristics of large woody debris piles along the semi‐arid Sabie River,South Africa

The formation of large woody debris (LWD) piles has a profound impact on channel patterns and riparian succession in temperate rivers. The opportunity to study LWD along the Sabie River, a river in the semi‐arid region of Kruger National Park, South Africa, arose in February 2000 after a significant flood (c. 100‐year return interval) removed a large proportion of the fully mature riparian forest and other plant communities. Much of the uprooted vegetation was deposited as LWD piles (woody vegetation accumulations deposited on the ground > 0.1 m³) throughout the riparian and upland zones. In this article we describe the spatial distribution patterns of LWD as related to geomorphic channel type and flood frequency zone, and assess pile composition characteristics six months after the flood. Within the areas surveyed there were 68 LWD piles per hectare, the median size of LWD piles was 4.6 m³ but pile sizes (by volume) varied widely. Pool/rapid geomorphic channel types had the highest density of LWD piles (79 ha^?1) and the largest piles (by volume) were in the bedrock anastomosing channels (mean = 124 m³). Piles were larger in the seasonal and ephemeral flood frequency zones (mean = 54 m³ and 55 m³) than piles in the active zone (c. 2 m³). The patterns of distribution and volume of LWD will affect the subsequent development of vegetation communities as debris piles form a mosaic of patches of surviving organisms and propagules that can strongly influence the initial trajectory of succession. The amount, distribution, and subsequent decomposition of LWD are different from that reported for temperate rivers, suggesting that the role of LWD may be different on non‐floodplain rivers such as the Sabie in semi‐arid South Africa. Copyright © 2004 John Wiley & Sons, Ltd.     

Bank stabilization,riparian land use and the distribution of large woody debris in a regulated reach of the upper Missouri River,North Dakota,USA

Large woody debris (LWD) is an important component of ecosystem structure and function in large floodplain rivers. We examined associations between LWD distribution and riparian land use, bank stabilization (e.g. riprap revetment), local channel geomorphology, and distance downriver from the dam in the Garrison Reach, a regulated reach of the upper Missouri River in North Dakota, USA. We conducted a survey of shoreline‐associated LWD in the reach during typical summer flow conditions. Reach‐wide LWD density was 21.3 pieces km^?1 of shoreline, of which most pieces (39% ) were ‘beached’ between the waterline and the bankfull level, 31% of pieces had evidence of originating at their current location (anchored), 18% of pieces were in deep water (>1 m), and 13% were in shallow water. LWD density along unstabilized alluvial (sand/silt) shorelines (27.3 pieces km^?1) was much higher than along stabilized shorelines (7.2 pieces km^?1). LWD density along forested shorelines (40.1 pieces km^?1) was higher than along open (e.g. rangeland, crop land; 9.2 pieces km^?1) or developed (e.g. residential, industrial; 7.8 pieces km^?1) shorelines. LWD density was highest overall along unstabilized, forested shorelines (45 pieces km^?1) and lowest along open or developed shorelines stabilized with a blanket‐rock revetment (5.5 pieces km^?1). Bank stabilization nearly eliminated the positive effect of riparian forest on LWD density. A predicted longitudinal increase in LWD density with distance from the dam was detected only for deep LWD (including snags) along unstabilized alluvial shorelines. Partial resurvey in the summer following the initial survey revealed a reduction in total LWD density in the reach that we attribute to an increase in summer flow between years. Changes in riparian management and land use could slow the loss of LWD‐related ecosystem services. However, restoration of a natural LWD regime in the Missouri River would require naturalization of the hydrograph and modification of existing bank stabilization and channel engineering structures. Copyright © 2004 John Wiley & Sons, Ltd.     

Population effect of a large‐scale stream restoration effort on Chinook salmon in the Pahsimeroi River,Idaho

Stream habitat restoration is an important tool for fisheries management in impaired lotic systems. Although small‐scale benefits of stream habitat restoration are commonly investigated, it is difficult to demonstrate population effects. The Pahsimeroi River Chinook salmon Oncorhynchus tshawytscha population was previously restricted to the lower portion of the river by multiple irrigation structures. To address fish passage issues, a combination of restoration projects was initiated including barrier removals, instream flow enhancements and installation of fish screens on diversions. The largest barrier was removed in 2009, more than doubling the amount of accessible linear habitat. We hypothesized restoration efforts would expand the distribution of spawning salmon in the Pahsimeroi River watershed, leading to a broader distribution of juveniles. We also hypothesized a broader juvenile distribution would have population effects by reducing the prevalence of density‐dependent growth and survival. Redds were documented in newly accessible habitat immediately following barrier removal and accounted for a median of 42% of all redds in the Pahsimeroi River watershed during 2009–2015. Snorkel surveys also documented juvenile rearing in newly accessible habitat. Juvenile productivity increased from a median of 64 smolts/female spawner for brood years 2002–2008 to 99 smolts/female spawner for brood years 2009–2014. Overall, results suggested increased habitat accessibility in the Pahsimeroi River broadened the distribution of spawning adult and rearing juvenile salmon and reduced the effects of density‐dependent survival. Large‐scale stream restoration efforts can have a population effect. Despite the large‐scale effort and response, habitat restoration alone is likely not sufficient to restore this population.     

Consumer‐diet discrimination of δ13C and δ15N: Source‐ and feeding‐oriented patterns based on gut content analysis in a large subtropical river of China

Understanding the trophic discrimination (?¹³C and ?¹⁵N) between consumers and diets in fluvial systems remains difficult because of the variable food sources and complex predator–prey interactions from headwaters to the estuaries. Here, stable carbon (δ¹³C) and nitrogen (δ¹⁵N) isotopes in fish and invertebrates from a large subtropical river in southern China were determined to explore trophic discrimination in conjunction with a gut content analysis. The ?¹³C values showed significant differences (p < .05) among functional feeding groups, with fish, shrimp, and insect scrapers presenting higher ?¹³C values (1.20 ± 0.23‰ to 1.51 ± 0.31‰) than other groups. The ?¹⁵N values varied significantly between invertebrates (0.64 ± 0.17‰ of insect collector‐gatherers to 1.63 ± 0.36‰ of shrimp predators) and fish (1.98 ± 0.19‰ of detritivores to 2.71 ± 0.43‰ of crustaceavores) and exhibited an increasing tendency from primary to secondary consumers. A linear regression analysis revealed that the longitudinal changes in ?¹³C and ?¹⁵N were closely associated with the δ¹³C of periphyton, the δ¹⁵N of particulate organic matter (POM) in water, and the relative contribution (%) of periphyton and organic detritus to the diet composition of consumers. These results indicated that discrimination factors might not only be influenced by the isotope signatures of basal food sources but also downstream shifts in dominant food items utilized by consumers. In particular, trophic discrimination between periphyton– and detritus–based food chains, such as “epilithic diatoms–shrimp scrapers–crustaceavorous fish” and “POM–bivalves–molluscivorous fish,” displayed regionally specific patterns. When back‐calculating to the diet assimilation and trophic position in subtropical streams and rivers, we suggest using the basin‐scale ?¹³C value of 0.96 ± 0.26‰ for all consumers and ?¹⁵N values of 1.07 ± 0.32‰ for invertebrates and 2.38 ± 0.37‰ for fish.     

The role of the hyporheic zone in the nitrogen dynamics of a semi‐arid gravel bed stream located downstream of a heavily polluted reservoir (Tafna wadi,Algeria)

Nitrogen retention was measured along the Tafna wadi downstream of a heavily polluted reservoir in North‐West Algeria to understand the role of the hyporheic zone (HZ) in nitrogen dynamics. Nutrient concentrations were measured monthly for 2 years within the bed sediments of a 300 m reach located 20 km downstream from the dam. Due to strong hydrological fluctuations hyporheic water was analysed during natural low and high water (HW) periods, and during water reservoir releases. Nutrient concentrations in surface water (SW) increased during water releases and in the HZ during the low water (LW) periods. Surface/hyporheic water interactions were characterized by determining the vertical hydraulic gradient (VHG) and the chemical signature of the ground water (GW). The latter was obtained from regional GW monitoring. Hyporheic chemistry was strongly influenced by patterns of surface flow. Hyporheic and SWs had similar chloride concentrations during high flow when they were significantly lower than those of the regional GW. GW was generally richer in nitrates and nitrites, but was lower in ammonium concentrations than interstitial and river waters. Nitrates decreased significantly from upstream to downstream within the HZ throughout the hydrological period even though temporal fluctuations were high. Ammonium concentrations in interstitial water (IW) were significantly higher than in SW and generally increased from upstream to downstream. This study demonstrates the importance of the HZ in altering the dissolved inorganic nitrogen composition and concentrations of heavily polluted arid streams. The study is of interest because it documents a large ‘natural experiment’ that being the effect of periodic water release from a reservoir with serious water quality problems on the water quality dynamics (particularly nitrogen) of subsurface and SWs downstream. Copyright © 2008 John Wiley & Sons, Ltd.     

Long‐term changes in macroinvertebrate communities of a heavy metal polluted stream: the river Nent (Cumbria,UK) after 28 years

The macroinvertebrate fauna of the river Nent, a heavy metal polluted upland stream in northern England, first surveyed in 1976, was re‐examined in 2004 to assess long‐term changes in relation to activities in the catchment which have included, a river restoration project, works associated with the development of a mine heritage site and the removal of a chicken farm and more effective organic pollution control measures. The degree of change between years in total abundance, numbers of taxa and community composition varied considerably between sites. Two tributary sites showed marked changes between years due to a reduction in acidity in one and changed substratum in the other but in the main river no significant difference in total taxa and total abundance was observed between years, although seasonal differences were significant. Multivariate community analyses grouped 1976 samples with those taken in 2004 but revealed a clear separation between upper and lower Nent sites. This observed difference may be related to increased algal cover in the lower sites in conjunction with geomorphological features of the lower Nent. Environmental assessment methodology River Invertebrate Prediction and Classification System (RIVPACS) identified ‘sensitive’ faunal groups and indicated that the extensive impact of zinc pollution in the main river has remained practically the same between 1976 and 2004. This persistence of community structure despite the heavily disturbed nature of the river is attributed to relative constancy in instream habitat conditions. The recent activities in the catchment have had little effect on the overall controllers of faunal communities in this system, zinc concentrations and geomorphological characteristics of the stream. However, further disturbances involving movement of spoil heaps and channel alterations in the upper catchment may increase both sediment and heavy metal loadings to the river. Copyright © 2007 John Wiley & Sons, Ltd.     

The influence of hydro‐climatic and anthropogenic effects on the long‐term variation of commercial fisheries in a large floodplain river

This study deals with the effects of climate fluctuations and anthropogenic impacts on fisheries of Paraná River over the last 100 years. It is the first attempt to appraise the influence of hydro‐climatic and anthropogenic variables on the population changes of the most important inland fisheries of Argentina. Datasets covering more than eight decades (1935–2016) of a number of frequent and abundant commercial species inhabiting the main channel as well as the large floodplain of Paraná River were used. Our results suggest that fish catches and structure changed over time. Long and short‐term changes and reductions were closely related to fluctuations of 18 hydro‐climatic variables. Positive effects on the ichthyofauna were recorded during humid periods (1930–1940 and 1970–2000), when the frequency of large spring–summer floods increased. An increase in anthropic impacts (accounted for with nine variables) were recorded during the last two decades. We highlight the usefulness of the approach to support the management of the resources, ensuring sustainability of commercial fish assemblages and the long‐term conservation of biodiversity in big rivers.     

Linking a spatially explicit watershed model (SWAT) with an in‐stream fish habitat model (PHABSIM): A case study of setting minimum flows and levels in a low gradient,sub‐tropical river

As changes in landuse and the demand for water accelerate, regulators and resource managers are increasingly asked to evaluate water allocation against the need for protection of in‐stream habitat. In the United States, only a small number of river basins have the long‐term hydrograph data needed to make these assessments. This paper presents an example of how to bridge the conceptual and physical divide between GIS‐based watershed modelling of basin‐discharge and in‐stream hydraulic habitat models. Specifically, we used a Soil and Water Assessment Tool (SWAT) model for the Hillsborough River to produce data for use in a Physical HABitat SIMulation (PHABSIM) model of the same river. This coupling of models allowed us to develop long‐term discharge data in ungauged river systems based on watershed characteristics and precipitation records. However this approach is not without important limitations. Results confirm that accuracy of the SWAT‐predicted hydrograph declines significantly when either the DEM resolution becomes too coarse or if DEM data are resampled to a coarser or finer resolution. This is due to both changes in the size and shape of the river basin with the varying DEMs and subsequent shifts in the proportions of land use, soils and elevation. Results show the use of 30 m DEMs produced hydrographic patterns amenable for using in‐stream habitat protocols like PHABSIM model, especially where little or no hydrographic and land use information exists. Copyright © 2010 John Wiley & Sons, Ltd.     

Regime shifts observed in Lake Kasumigaura,a large shallow lake in Japan: Analysis of a 40‐year limnological record

Lake Kasumigaura, which is composed of the two basins (Nishiura and Kitaura), is a large, shallow, hypereutrophic lake. Phytoplankton and water quality records from the past forty years were analysed to elucidate whether or not, when, and what type of certain regime shifts may have occurred, based on using inferential regime shift detectors. Characteristics of the phytoplankton and water quality changes were similar at 6 sampling sites in the two basins, with 20 water quality parameters being classified into four groups, based on cluster analysis. Shifts in dominant plankton groups (DPGs) and water quality occurring almost concomitantly, concentration on the period from 1987 to 1992 (Shift A) and from 1997 to 2001 (Shift B), with those observed for the two basins usually being similar with small differences. Two types of inferential regime shift detectors (sequential t‐test type; Rodionov's RSD and sequential F‐test type: package strucchange in R) yielded similar timings and significances of the shifts. Furthermore, changes in skewness and conditional heteroskedasticity (package early warnings in R) usually represented early warning signals before the shifts. Correlation analysis and ratios of dissolved inorganic nitrogen (DIN) vs. total phosphorus (TP) supported the hypothesis that phosphorus was the phytoplankton biomass limiting nutrient, except for one period for the Nishiura basin. Neither the nitrogen:phosphorus (N/P) ratio hypothesis and ammonia–nitrate (NH₄‐N/NO₃‐N) hypothesis satisfactorily explain the DPGs before and after Shift A (Microcystis spp. and Planktothrix spp., respectively), although it may be possible that these ratios triggered the DPG change in this shift. A considerable increase in silicon was observed for Shift B when the DPGs changed from cyanobacteria to diatoms. Further studies on the accurate types and triggers of the regime shifts are necessary to better understand the interactions between ecosystem and water quality for this and similar lakes elsewhere.     

Channel response to sediment replenishment in a large gravel‐bed river: The case of the Saint‐Sauveur dam in the Buëch River (Southern Alps,France)

The Saint‐Sauveur dam was built in 1992 in the middle section of the Buëch River. Downstream of the dam, a channel incision by several meters was observed. A gravel replenishment operation was planned in order to restore the active channel. An equivalent of two times the mean annual bedload‐transport capacity (43,500 m³) was replenished downstream of the dam in September 2016. The aim of this paper is to quantify morphological change associated with sediment remobilization in order to evaluate the efficiency of the restoration works. The monitoring was based on a combination of (a) change detection using sequential high‐resolution digital elevation models (from airborne LiDAR data), (b) bedload tracing using active ultrahigh‐frequency radio‐frequency identification technology, and (c) complementary field surveys of channel grain‐size distribution and morphology for bedload‐transport computation. Field monitoring allows us to capture a net aggradation along a 2‐km reach after the first post‐replenishment flood. A sediment balance analysis was performed to back‐calculate bedload supply coming from the sluicing operation during the flood. Although the sediment replenishment operation clearly had a positive impact on the morphological conditions of the starved river reach, the effective bedload supply from artificial berms (22,650 m³) was insufficient to initiate substantial channel shifting along the restored reach and a subsequent amplification of the sediment recharge. The combination of high‐resolution topographic resurveys and sediment tracing was successful to evaluate the downstream propagation of sediment replenishment effects.     

Monitoring of environmental flow outcomes in a large river basin: The Commonwealth Environmental Water Holder's long‐term intervention in the Murray–Darling Basin,Australia

The Murray–Darling Basin in south‐eastern Australia contains over 70,000 km² of wetlands and floodplains, many of which are in poor condition. In response, Australian governments have committed to a major restoration program, the Murray–Darling Basin Plan that includes management of 2,750 Gl of environmental water to protect and restore aquatic ecosystems. The restoration is being undertaken within an adaptive management framework that includes monitoring the outcomes of environmental flows in seven river valleys. This paper provides an overview of the 5‐year monitoring project and some preliminary results. Monitoring design considered the Basin Plan's environmental objectives, conceptual models of ecosystem responses to flow, and an outcomes framework linking flow responses to the environmental objectives. Monitoring indicators includes ecosystem type, vegetation, river metabolism, and fish. Responses are evaluated to identify the contribution of environmental flows to Basin Plan environmental objectives and continual improvements in management. The program is unique in that it seeks to monitor long‐term outcomes of environmental flows at the river basin scale. Despite many challenges, the monitoring has become a key part of the adaptive management of environmental flows in the Murray–Darling Basin.