Mechanical Characterization of Amyloid Fibrils Using Coarse‐Grained Normal Mode Analysis

Recent experimental studies have shown that amyloid fibril formed by aggregation of β peptide exhibits excellent mechanical properties comparable to other protein materials such as actin filaments and microtubules. These excellent mechanical properties of amyloid fibrils are related to their functional role in disease expression. This indicates the necessity of understanding how an amyloid fibril achieves the remarkable mechanical properties through self‐aggregation with structural hierarchy. However, the structure‐property–function relationship still remains elusive. In this work, the mechanical properties of human islet amyloid polypeptide (hIAPP) are studied with respect to its structural hierarchies and structural shapes by coarse‐grained normal mode analysis. The simulation shows that hIAPP fibril can achieve the excellent bending rigidity via specific aggregation patterns such as antiparallel stacking of β peptides. Moreover, the length‐dependent mechanical properties of amyloids are found. This length‐dependent property has been elucidated from a Timoshenko beam model that takes into account the shear effect on the bending of amyloids. In summary, the study sheds light on the importance of not only the molecular architecture, which encodes the mechanical properties of the fibril, but also the shear effect on the mechanical (bending) behavior of the fibril.     

Engineering Increased Stability into Self‐Assembled Protein Fibers

Two stages in the rational redesign of a peptide‐based, self‐assembling fiber (SAF) are described. The SAF system comprises two peptides designed to form an offset α‐helical coiled‐coil heterodimer. The “sticky‐ends” are complementary and promote longitudinal assembly. Alone, the two peptides are unstructured, but co‐assemble upon mixing to form α‐helical fibrils, which bundle to form fibers 40–50 nm wide and tens of micrometers long. Assembly is controllable and occurs at pH 7 in water, making SAFs a potential scaffold for 3D cell culture. The purposes of the redesigns were 1) to investigate the fiber‐thickening process, and 2) to increase fiber stability for potential biological and biomedical applications. First, mutations were made to the original peptide designs to increase fibril–fibril interactions and so produce thicker and more‐stable fibers. The second iteration aimed to increase the primary peptide–peptide interactions by increasing the overlap in the offset dimer and so promote the initial step in fiber formation. As judged by circular dichroism spectroscopy and transmission electron microscopy, both iterations improved fiber assembly and stability: the critical peptide concentration for assembly improved from 60 μM to 4 μM ; the midpoint of thermal unfolding increased from 22 °C to 65 °C; and the salt tolerance improved from 75 mM to greater than 250 mM KCl. These improvements bring closer applications of the SAF system under physiological conditions, for example as a biocompatible material for 3D cell culture. In addition, ordered surface features were observed in the second‐ and third‐generation fibers compared with the original design. This indicates improved internal order in the redesigned fibers. In turn, this suggests a molecular mechanism for the improved stability and sheds light on the fiber‐assembly process.     

Evolution‐Based Design of an Injectable Hydrogel

A new class of simple, linear, amphiphilic peptides are developed that have the ability to undergo triggered self‐assembly into self‐supporting hydrogels. Under non‐gelling aqueous conditions, these peptides exist in a random coil conformation and peptide solutions have the viscosity of water. On the addition of a buffered saline solution, the peptides assemble into a β‐sheet rich network of fibrils, ultimately leading to hydrogelation. A family of nine peptides is prepared to study the influence of peptide length and amino acid composition on the rate of self‐assembly and hydrogel material properties. The amino acid composition is modulated by varying residue hydrophobicity and hydrophilicity on the two opposing faces of the amphiphile. The conformation of peptides in their soluble and gel state is studied by circular dichroism (CD), while the resultant material properties of their gels is investigated using oscillatory sheer rheology. One weight percent gels formed under physiological conditions have storage modulus (G′) values that vary from ≈20 to ≈800 Pa, with sequence length and hydrophobic character playing a dominant roll in defining hydrogel rigidity. Based on the structural and functional data provided by the nine‐peptide family members, an optimal sequence, namely LK13, is evolved. LK13 (LKLKLKLKLKLKL‐NH₂) undergoes triggered self‐assembly, affording the most rigid gel of those studied (G′=797 ± 105). It displays shear thin‐recovery behavior, allowing its delivery by syringe and is cytocompatibile as assessed with murine C3H10t1/2 mesenchymal stem cells.     

Amyloid Directed Synthesis of Titanium Dioxide Nanowires and Their Applications in Hybrid Photovoltaic Devices

This paper reports β‐lactoglobulin amyloid protein fibrils directed synthesis of Titanium Dioxide (TiO₂) hybrid nanowires. Protein fibrils act as templates to generate closely packed TiO₂ nanoparticles on the surface of the fibrils using titanium (IV) bis (ammonium lactato) dihydroxide (TiBALDH) as precursor, resulting in the TiO₂–coated amyloid hybrid nanowires. These amyloid fibrils also exhibit complexation with a luminescent water‐soluble semiconductive polythiophene (P3HT). TiO₂ nanowires behave as electron acceptor while, P3HT as electron donor. In this way, amyloid‐TiO₂ hybrid nanowires can serve in heterojunction photovoltaic devices. To demonstrate this, a photovoltaic active layer is prepared by spin coating the blended mixture of polythiophene‐coated fibrils and amyloid‐TiO₂ hybrid nanowires. The current–voltage characteristics of these photovoltaic devices exhibit excellent fill factor of 0.53, photovoltaic current density of 3.97 mA·cm^?2 and power conversion efficiency of 0.72%, highlighting a possible future role for amyloid‐based templates in donor–acceptor devices, organic electronics and hybrid solar cells.     

Amyloid Fibrils form Hybrid Colloidal Gels and Aerogels with Dispersed CaCO3 Nanoparticles

New hybrid colloidal gels are reported formed by amyloid fibrils and CaCO₃ nanoparticles (CaNPs), with Ca²⁺ as charge screening ions and CaNPs as physical crosslinking agents to establish and stabilize the network. The gel is characterized by rheological measurements and diffusing wave spectroscopy, complemented by microscopic observations using transmission and scanning electron microscopy. The hybrid colloidal gels show a two orders of magnitude improved gel strength at significantly shorter gelation times compared to previous calcium ion‐induced amyloid fibril gels. Supercritical CO₂‐dried colloidal aerogels allow demonstrating that amyloid fibrils, combined with smaller (higher specific surface area) CaNPs, constitute a denser fibrils network, resulting in stronger gels. By varying the amyloid fibril concentration and the CaNPs size and concentration, the complete phase diagram is mapped out. This enables identifying the sol–gel phase transition and a window for gel formation, which widens with increasing CaNPs size. Finally pH responsiveness and self‐healing properties of this hybrid colloidal gel are also demonstrated, making these systems a suitable candidate for biological applications.     

Fibrillar Constructs from Multilevel Hierarchical Self‐Assembly of Discotic and Calamitic Supramolecular Motifs

We here report on polymeric solid‐state self‐assembly leading to organization over six length scales, ranging from the molecular scale up to the macroscopic length scale. We combine several concepts, i.e., rod‐like helical and disc‐like liquid crystallinity, block copolymer self‐assembly, DNA‐like interactions to form an ionic polypeptide–nucleotide complex and packing frustration to construct mesoscale fibrils. Ionic complexation of anionic deoxyguanosine monophosphate (dGMP) and triblock coil–rod–coil copolypeptides is used with cationic end blocks and a helical rod‐like midblock. The guanines undergo Hoogsteen pairing to form supramolecular discs, they π‐stack into columns that self‐assemble into hexagonal arrays that are controlled by the end blocks. Packing frustration between the helical rods from the block copolymer midblock and the discotic motif limits the lateral growth of the assembly thus affording mesoscale fibrils, which in turn, form an open fibrillar network. The concepts suggest new rational methodologies to construct structures on multiple length scales in order to tune polymer properties.     

Ordering of Disordered Nanowires: Spontaneous Formation of Highly Aligned,Ultralong Ag Nanowire Films at Oil–Water–Air Interface

One‐dimensional nanomaterials and their assemblies attract considerable scientific interest in the physical, chemical, and biological fields because of their potential applications in electronic and optical devices. The interface‐assembly method has become an important route for the self‐assembly of nanoparticles, nanosheets, nanotubes, and nanorods, but the self‐assembly of ultralong nanowires has only been successful using the Langmuir–Blodgett approach. A novel approach for the spontaneous formation of highly aligned, ultralong Ag nanowire films at the oil–water–air interface is described. In this approach, the three‐phase interface directs the movement and self‐assembly process of the ultralong Ag nanowires without the effect of an external force or complex apparatus. The ordered films exhibit intrinsic large electromagnetic fields that are localized in the interstitials between adjacent nanowires. This new three‐phase‐interface approach is proven to be a general route that can be extended to self‐assemble other ultralong nanowires and produce ordered films.     

Hierarchical Self‐Assembly of Peptide‐Coated Carbon Nanotubes

Numerous applications, from molecular electronics to super‐strong composites, have been suggested for carbon nanotubes. Despite this promise, difficulty in assembling raw carbon nanotubes into functional structures is a deterrent for applications. In contrast, biological materials have evolved to self‐assemble, and the lessons of their self‐assembly can be applied to synthetic materials such as carbon nanotubes. Here we show that single‐walled carbon nanotubes, coated with a designed amphiphilic peptide, can be assembled into ordered hierarchical structures. This novel methodology offers a new route for controlling the physical properties of nanotube systems at all length scales from the nano‐ to the macroscale. Moreover, this technique is not limited to assembling carbon nanotubes, and could be modified to serve as a general procedure for controllably assembling other nanostructures into functional materials.     

Histological study of experimental murine AA amyloidosis

The localization of amyloid fibril components and the cells related to the formation and resorption of the fibrils are still controversial. We conducted a time-kinetic study to analyse the process of amyloid fibril deposition in the spleen of an AA amyloidosis animal model immunohistochemically. Murine AA amyloidosis was induced by an emulsion injection composed of Freund's complete adjuvant and Mycobacterium butyricum. The serum amyloid A level was the highest at 3 days after the induction and gradually decreased. The amyloid deposition was first detected in extracellular spaces in the marginal zone of the spleen at 7 days after induction. F4/80 positive red pulp macrophages increased in number after the induction and accumulated near the amyloid deposition areas. Amyloid P component (APC) and chondroitin sulphate proteoglycan (CSPG), which are composed of amyloid fibril, were detected in the cytoplasm of F4/80 positive red pulp macrophages and ER-TR9 positive marginal zone macrophages, respectively, then localized in the amyloid deposition areas. APC was also localized in CSPG positive and F4/80 negative cells, which might be fibroblasts at 3 days. These results suggest a close association of APC positive/ER-TR9 positive macrophages and APC positive/CSPG positive fibroblasts in the formation of amyloid fibrils and F4/80 positive macrophages with the resorption of fibrils.     

Oriented Growth of Self‐Assembled Polyaniline Nanowire Arrays Using a Novel Method

A novel method for fabrication of highly oriented polyaniline (PANI) nanowires without removal of the template was developed by combining self‐assembly and template synthesis techniques. By using a self‐assembly process under inhibition conditions, oriented arrays of PANI nanowires growing out of the nanoporous template were obtained, with nanowire diameters ranging from 110 to 190 nm and lengths of several micrometers. The lengths of these wires can be roughly controlled by the polymerization time.     

3D2 Self‐Assembling Janus Peptide Dendrimers with Tailorable Supermultivalency

The self‐assembly of peptides enables the construction of self‐assembled peptide nanostructures (SPNs) with chemical composition similar to those of natural proteins; however, the structural complexity and functional properties of SPNs are far beneath those of natural proteins. One of the most fundamental challenges in fabricating more elaborate SPNs lies in developing building blocks that are simultaneously more complex and relatively easy to synthesize. Here, the development of self‐assembling Janus peptide dendrimers (JPDs) is reported, which have fully 3D structures similar to those of globular proteins. For the reliable and convenient synthesis of JPDs, a solid‐phase bifurcation synthesis method is devised. The self‐assembly behavior of JPDs is unique because only the dendrimer generation and not the weight fraction dictates the morphology of SPNs. The coassembly of two JPD building blocks provides an opportunity not only to enlarge the morphological repertoire in a predictable manner but also to discover SPNs with unusual and interesting morphologies. Because JPD assemblies have dual multivalency, i.e., supramolecular and unimolecular multivalency, the JPD system enables the statistical selection of materials with high avidity for the desired cell types and possibly any target receptors.     

Ellipsoidal Polyaspartamide Polymersomes with Enhanced Cell‐Targeting Ability

Nanosized polymersomes functionalized with peptides or proteins are being increasingly studied for targeted delivery of diagnostic and therapeutic molecules. Earlier computational studies have suggested that ellipsoidal nanoparticles, compared to spherical ones, display enhanced binding efficiency with target cells, but this has not yet been experimentally validated. Here, it is hypothesized that hydrophilic polymer chains coupled to vesicle‐forming polymers would result in ellipsoidal polymersomes. In addition, ellipsoidal polymersomes modified with cell adhesion peptides bind with target cells more actively than spherical ones. This hypothesis is examined by substituting polyaspartamide with octadecyl chains and varying numbers of poly(ethylene glycol) (PEG) chains. Increasing the degree of substitution of PEG drives the polymer to self‐assemble into an ellipsoidal polymersome with an aspect ratio of 2.1. Further modification of these ellipsoidal polymersomes with peptides containing an Arg‐Gly‐Asp sequence leads to a significant increase in the rate of association and decrease in the rate of dissociation with a substrate coated with α_vβ₃ integrins. The results will serve to improve the efficiency of targeted delivery of a wide array of polymersomes loaded with various biomedical modalities.     

Amino Acid Pairing for De Novo Design of Self‐Assembling Peptides and Their Drug Delivery Potential

Molecular self‐assembly has emerged as the “bottom‐up” engineering route to fabricate functional supramolecules for diverse applications. The design of molecular building units becomes critical in determining the structure, properties, and function of the resulting assemblies. Here, a de novo design principle of amino acid pairing (AAP) to generate new classes of self‐assembling peptides (SAPs) is presented. In this study, the AAP focuses on hydrogen bonding, and ionic and hydrophobic interactions among amino acid pairs. With solely hydrogen bond pairs, SAPs can be constructed with only two amino acids. With all three AAP strategies (hydrogen bonds, ionic and hydrophobic pairs), a short novel SAP is constructed. This peptide can self‐assemble into β‐sheet‐rich nanofibers with a relatively low “critical aggregation concentration (CAC)” of ～10 μM . It also shows the ability to stabilize and deliver the hydrophobic anticancer agent ellipticine in aqueous solution. The peptide‐drug complexes/co‐assemblies exhibit anticancer activity against human lung carcinoma cells A549 and breast cancer cells MCF‐7, and have good dilution stability. The presented AAP design provides a new strategy to fabricate functional supramolecules with potential applications in nanomedicine.     

Cover Picture: Fabrication of Multicomponent Microsystems by Directed Three‐Dimensional Self‐Assembly (Adv. Funct. Mater. 5/2005)

Directed three‐dimensional self‐assembly to assemble and package integrated semiconductor devices is demonstrated by Jacobs and Zheng on p. 732. The self‐assembly process uses geometrical shape recognition to identify different components and surface‐tension between liquid solder and metal‐coated areas to form mechanical and electrical connections.The components (top left) self‐assemble in a turbulent flow (center) and form functional multi‐component microsystems (bottom right) by sequentially adding parts to the assembly solution. The technique provides, for the first time, a route to enable the realization of three‐dimensional heterogeneous microsystems that contain non‐identical parts, and connecting them electrically. We have developed a directed self‐assembly process for the fabrication of three‐dimensional (3D) microsystems that contain non‐identical parts and a statistical model that relates the process yield to the process parameters. The self‐assembly process uses geometric‐shape recognition to identify different components, and surface tension between liquid solder and metal‐coated areas to form mechanical and electrical connections. The concept is used to realize self‐packaging microsystems that contain non‐identical subunits. To enable the realization of microsystems that contain more than two non‐identical subunits, sequential self‐assembly is introduced, a process that is similar to the formation of heterodimers, heterotrimers, and higher aggregates found in nature, chemistry, and chemical biology. The self‐assembly of three‐component assemblies is demonstrated by sequentially adding device segments to the assembly solution including two hundred micrometer‐sized light‐emitting diodes (LEDs) and complementary metal oxide semiconductor (CMOS) integrated circuits. Six hundred AlGaInP/GaAs LED segments self‐assembled onto device carriers in two minutes, without defects, and encapsulation units self‐assembled onto the LED‐carrier assemblies to form a 3D circuit path to operate the final device. The self‐assembly process is a well‐defined statistical process. The process follows a first‐order, non‐linear differential equation. The presented model relates the progression of the self‐assembly and yield with the process parameters—component population and capture probability—that are defined by the agitation and the component design.     

A Modular Vaccine Platform Combining Self‐Assembled Peptide Cages and Immunogenic Peptides

Subunit vaccines use delivery platforms to present minimal antigenic components for immunization. The benefits of such systems include multivalency, self‐adjuvanting properties, and more specific immune responses. Previously, the design, synthesis, and characterization of self‐assembling peptide cages (SAGEs) have been reported. In these, de novo peptides are combined to make hubs that assemble into nanoparticles when mixed in aqueous solution. Here it is shown that SAGEs are nontoxic particles with potential as accessible synthetic peptide scaffolds for the delivery of immunogenic components. To this end, SAGEs functionalized with the model antigenic peptides tetanus toxoid_632‐651 and ovalbumin_323‐339 drive antigen‐specific responses both in vitro and in vivo, eliciting both CD4⁺ T cell and B cell responses. Additionally, SAGEs functionalized with the antigenic peptide hemagglutinin_518‐526 from the influenza virus are also able to drive a CD8⁺ T cell response in vivo. This work demonstrates the potential of SAGEs to act as a modular scaffold for antigen delivery, capable of inducing and boosting specific and tailored immune responses.     

Functional Organic Semiconductors Assembled via Natural Aggregating Peptides

Specific peptide sequences designed by inspection of protein–protein interfaces have been identified and used as tectons in hybrid functional materials. Here, an 8‐mer peptide derived from an interface of the peroxiredoxin family of self‐assembling proteins is exploited to encode the assembly of the perylene imide‐based organic semiconductor building blocks. By augmenting the peptide with additional functionality to trigger aggregation and manipulate the directionality of peptide‐semiconductor coupling, a series of hybrid materials based on the natural peptide interface is presented. Using spectroscopic probes, the mode of self‐assembly and the electronic coupling between neighboring perylene units is shown to be strongly affected by the number of peptides attached, and by their backbone directionality. The disubstituted material with peptides extending in the N to C direction away from the perylene core exhibits strong coupling and long‐range order, both attractive properties for electronic device applications. A bio‐organic field‐effect transistor is fabricated using this material, highlighting the possibilities of exploiting natural peptide tectons to encode self‐assembly in other functional materials and devices.     

Simple and Efficient Targeted Intracellular Protein Delivery with Self‐Assembled Nanovehicles for Effective Cancer Therapy

Protein therapy offers promising prospects for the treatment of various important diseases, thus it is highly desirable to develop a robust carrier that can deliver active proteins into cells. The development of a novel protein delivery platform based on the self‐assembly of multiarmed amphiphilic cyclodextrins (CDEH) is reported. CDEH can self‐assemble into nanoparticles in aqueous solution and achieve superior encapsulation of protein (loading capacity > 30% w/w) simply by mixing with protein solution without introducing any subsequent cumbersome steps that may inactivate proteins. More importantly, CDEH nanovehicles can be easily further modified with various targeting groups based on host–guest complexation. Using saporin as a therapeutic protein, AS1411‐aptamer‐modified CDEH nanovehicles can preferentially accumulate in tumors and efficiently inhibit tumor growth in a MDA‐MB‐231 xenograft mouse model. Moreover, folate‐targeted CDEH nanovehicles can also deliver Cas9 protein and Plk1‐targeting sgRNA into Hela cells, leading to 47.1% gene deletion and 64.1% Plk1 protein reduction in HeLa tumor tissue, thereby effectively suppressing the tumor progression. All these results indicate the potential of targeted CDEH nanovehicles in intracellular protein delivery for improving protein therapeutics.