A case study to evaluate the suitability of graph transformation tools for program refactoring

This article proposes a case study to evaluate the suitability of graph transformation tools for program refactoring. To qualify for this purpose, a graph transformation system must be able to (1) import a graph-based representation of models of Java programs, (2) allow these models to be transformed interactively with well-known program refactorings and (3) export the resulting models in the same graph-based format used as input. The case study aims to enable comparison of various features of graph transformation tools, such as their expressiveness and their ability to interact with the user. The model of Java programs is presented and some examples for translating Java source code into the model are provided. The refactorings selected for the case study are specified in detail.     

Thoughtful brute-force attack of the RERS 2012 and 2013 Challenges

The Rigorous Examination of Reactive Systems’ (rers) Challenges provide a forum for experimental evaluation based on specifically synthesized benchmark suites. In this paper, we report on our ‘brute-force attack’ of the rers 2012 and 2013 Challenges. We connected the rers problems to two state-of-the-art explicit state model checkers: LTSmin and Spin. Apart from an effective compression of the state vector, we did not analyze the source code of the problems. Our brute-force approach was successful: it won both editions of the rers Challenge.     

Solving constraint satisfaction problems with SAT modulo theories

Due to significant advances in SAT technology in the last years, its use for solving constraint satisfaction problems has been gaining wide acceptance. Solvers for satisfiability modulo theories (SMT) generalize SAT solving by adding the ability to handle arithmetic and other theories. Although there are results pointing out the adequacy of SMT solvers for solving CSPs, there are no available tools to extensively explore such adequacy. For this reason, in this paper we introduce a tool for translating FLATZINC (MINIZINC intermediate code) instances of CSPs to the standard SMT-LIB language. We provide extensive performance comparisons between state-of-the-art SMT solvers and most of the available FLATZINC solvers on standard FLATZINC problems. The obtained results suggest that state-of-the-art SMT solvers can be effectively used to solve CSPs.     

An Efficient Scalable Runtime System for Macro Data Flow Processing Using S-Net

S-Net is a declarative coordination language and component technology aimed at radically facilitating software engineering for modern parallel compute systems by near-complete separation of concerns between application (component) engineering and concurrency orchestration. S-Net builds on the concept of stream processing to structure networks of communicating asynchronous components implemented in a conventional (sequential) language. In this paper we present the design, implementation and evaluation of a new and innovative runtime system for S-Net streaming networks. The Front runtime system outperforms the existing implementations of S-Net by orders of magnitude for stress-test benchmarks, significantly reduces runtimes of fully-fledged parallel applications with compute-intensive components and achieves good scalability on our 48-core test system.     

InterAspect: aspect-oriented instrumentation with GCC

We present the InterAspect instrumentation framework for GCC, a widely used compiler infrastructure. The addition of plug-in support in the latest release of GCC makes it an attractive platform for runtime instrumentation, as GCC plug-ins can directly add instrumentation by transforming the compiler??s intermediate representation. Such transformations, however, require expert knowledge of GCC internals. InterAspect addresses this situation by allowing instrumentation plug-ins to be developed using the familiar vocabulary of Aspect-Oriented Programming: pointcuts, join points, and advice functions. Moreover, InterAspect uses specific information about each join point in a pointcut, possibly including results of static analysis, to support powerful customized instrumentation. We describe the InterAspect API and present several examples that illustrate its practical utility as a runtime-verification platform. We also introduce a tracecut system that uses InterAspect to construct program monitors that are formally specified as regular expressions.     

Verification and validation meet planning and scheduling

A planning and scheduling (P&S) system takes as input a domain model and a goal, and produces a plan of actions to be executed, which will achieve the goal. A P&S system typically also offers plan execution and monitoring engines. Due to the non-deterministic nature of planning problems, it is a challenge to construct correct and reliable P&S systems, including, for example, declarative domain models. Verification and validation (V&V) techniques have been applied to address these issues. Furthermore, V&V systems have been applied to actually perform planning, and conversely, P&S systems have been applied to perform V&V of more traditional software. This article overviews some of the literature on the fruitful interaction between V&V and P&S.     

Proving operational termination of membership equational programs

Reasoning about the termination of equational programs in sophisticated equational languages such as Elan, Maude, OBJ, CafeOBJ, Haskell, and so on, requires support for advanced features such as evaluation strategies, rewriting modulo, use of extra variables in conditions, partiality, and expressive type systems (possibly including polymorphism and higher-order). However, many of those features are, at best, only partially supported by current term rewriting termination tools (for instance mu-term, C i ME, AProVE, TTT, Termptation, etc.) while they may be essential to ensure termination. We present a sequence of theory transformations that can be used to bridge the gap between expressive membership equational programs and such termination tools, and prove the correctness of such transformations. We also discuss a prototype tool performing the transformations on Maude equational programs and sending the resulting transformed theories to some of the aforementioned standard termination tools.     

Para Miner: a generic pattern mining algorithm for multi-core architectures

In this paper, we present Para Miner which is a generic and parallel algorithm for closed pattern mining. Para Miner is built on the principles of pattern enumeration in strongly accessible set systems. Its efficiency is due to a novel dataset reduction technique (that we call EL-reduction), combined with novel technique for performing dataset reduction in a parallel execution on a multi-core architecture. We illustrate Para Miner’s genericity by using this algorithm to solve three different pattern mining problems: the frequent itemset mining problem, the mining frequent connected relational graphs problem and the mining gradual itemsets problem. In this paper, we prove the soundness and the completeness of Para Miner. Furthermore, our experiments show that despite being a generic algorithm, Para Miner can compete with specialized state of the art algorithms designed for the pattern mining problems mentioned above. Besides, for the particular problem of gradual itemset mining, Para Miner outperforms the state of the art algorithm by two orders of magnitude.     

An approach to the DIN Kernel Lisp definition

A DIN Kernel LISP Draft (DKLisp) has been developed by DIN as Reaction to Action D1 (N79), short term goal, of ISO WG16. It defines a subset language, as compatible as possible with the ANSICommon-Lisp draft, but also with theEuLisp draft. It combines the most important LISP main stream features in a single, compact, but nevertheless complete language definition, which thereby could be well suited as basis for a short term InternationalLisp Standard. Besides the functional and knowledge processing features, the expressive power of the language is well comparable with contemporary procedural languages, as e.g. C++ (of course without libraries). Important features ofDKLisp are:

to be a “Lisp-1,” but allowing an easy “Lisp-2” transformation;

to be a simple, powerful and standardized educationalLisp;

to omit all features, which are unclean or in heavy discussion;

DKLisp programs run nearly unchanged inCommon-Lisp;

DKLisp contains a simple object and package system;

DKLisp contains those data classes and control structures also common to most modernLisp and non-Lisp languages;

DKLisp offers a simple stream I/O;

DKLisp contains a clean unified hierarchical class/type system;

DKLisp contains the typical “Lisp-features” in an orthogonal way;

DKLisp allows and encourages really small but powerful implementations;

DKLisp comes in levels, so allowing ANSICommon-Lisp to be an extension ofDKLisp level-1.

The present is the second version of the proposal, namely version 1.2, with slight differences with respect to the one sent to ISO. Sources of such changes were the remarks generously sent by many readers of the previous attempt.     

The clock constraint specification language for building timed causality models

The uml Profile for Modeling and Analysis of Real-Time and Embedded (RTE) systems has recently been adopted by the OMG. Its Time Model extends the informal and simplistic Simple Time package proposed by Unified Modeling Language (UML2) and offers a broad range of capabilities required to model RTE systems including discrete/dense and chronometric/logical time. The Marte specification introduces a Time Structure inspired from several time models of the concurrency theory and proposes a new clock constraint specification language (ccsl) to specify, within the context of the uml, logical and chronometric time constraints. A semantic model in ccsl is attached to a (uml) model to give its timed causality semantics. In that sense, ccsl is comparable to the Ptolemy environment, in which directors give the semantics to models according to predefined models of computation and communication. This paper focuses on one historical model of computation of Ptolemy [Synchronous Data Flow (SDF)] and shows how to build SDF graphs by combining uml models and ccsl.     

A low level component model easing performance portability of HPC applications

Scientific applications are getting increasingly complex, e.g., to improve their accuracy by taking into account more phenomena. Meanwhile, computing infrastructures are continuing their fast evolution. Thus, software engineering is becoming a major issue to offer ease of development, portability and maintainability while achieving high performance. Component based software engineering offers a promising approach that enables the manipulation of the software architecture of applications. However, existing models do not provide an adequate support for performance portability of HPC applications. This paper proposes a low level component model (L \(^2\) C) that supports inter-component interactions for typical scenarios of high performance computing, such as process-local shared memory and function invocation (C++ and Fortran), MPI, and Corba. To study the benefits of using L \(^2\) C, this paper walks through an example of stencil computation, i.e. a structured mesh Jacobi implementation of the 2D heat equation parallelized through domain decomposition. The experimental results obtained on the Grid’5000 testbed and on the Curie supercomputer show that L \(^2\) C can achieve performance similar to that of native implementations, while easing performance portability.     

NeVer: a tool for artificial neural networks verification

The adoption of Artificial Neural Networks (ANNs) in safety-related applications is often avoided because it is difficult to rule out possible misbehaviors with traditional analytical or probabilistic techniques. In this paper we present NeVer, our tool for checking safety of ANNs. NeVer encodes the problem of verifying safety of ANNs into the problem of satisfying corresponding Boolean combinations of linear arithmetic constraints. We describe the main verification algorithm and the structure of NeVer. We present also empirical results confirming the effectiveness of NeVer on realistic case studies.     

The PSurface library

We describe PSurface, a C $++$ library that allows to store and access piecewise linear maps between simplicial surfaces in $\mathbb{R }^2$ and $\mathbb{R }^3$ . Piecewise linear maps can be used, e.g., to construct boundary approximations for finite element grids, and grid intersections for domain decomposition methods. In computer graphics the maps allow to build level-of-detail representations as well as texture- and bump maps. The PSurface library can be used as the basis for the implementation of a wide range of algorithms that use piecewise linear maps between triangulated surfaces. A few simple examples are given in this work. We document the data structures and algorithms and show how PSurface is used in the numerical analysis framework Dune and the visualization software Amira.     

An empirical comparison of learning algorithms for nonparametric scoring: the TreeRank algorithm and other methods

The TreeRank algorithm was recently proposed in [1] and [2] as a scoring-based method based on recursive partitioning of the input space. This tree induction algorithm builds orderings by recursively optimizing the Receiver Operating Characteristic curve through a one-step optimization procedure called LeafRank. One of the aim of this paper is the in-depth analysis of the empirical performance of the variants of TreeRank/LeafRank method. Numerical experiments based on both artificial and real data sets are provided. Further experiments using resampling and randomization, in the spirit of bagging and random forests are developed [3, 4] and we show how they increase both stability and accuracy in bipartite ranking. Moreover, an empirical comparison with other efficient scoring algorithms such as RankBoost and RankSVM is presented on UCI benchmark data sets.     

Markov Chain Analysis of Self-organizing Mobile Nodes

Self-organization of autonomous mobile nodes using bio-inspired algorithms in mobile ad hoc networks (manets) has been presented in earlier work of the authors. In this paper, the convergence speed of our force-based genetic algorithm (called fga) is provided through analysis using homogeneous Markov chains. The fga is run by each mobile node as a topology control mechanism to decide a corresponding node??s next speed and movement direction so that it guides an autonomous mobile node over an unknown geographical area to obtain a uniform node distribution while only using local information. The stochastic behavior of fga, like all ga-based approaches, makes it difficult to analyze the effects that various manet characteristics have on its convergence speed. Metrically transitive homogeneous Markov chains have been used to analyze the convergence of our fga with respect to various communication ranges of mobile nodes and also the number of nodes in various scenarios. The Dobrushin contraction coefficient of ergodicity is used for measuring convergence speed for Markov chain model of our fga. Two different testbed platforms are presented to illustrate effectiveness of our bio-inspired algorithm in terms of area coverage.     

Parameterized Domination in Circle Graphs

A circle graph is the intersection graph of a set of chords in a circle. Keil [Discrete Appl. Math., 42(1):51–63, 1993] proved that Dominating Set, Connected Dominating Set, and Total Dominating Set are NP-complete in circle graphs. To the best of our knowledge, nothing was known about the parameterized complexity of these problems in circle graphs. In this paper we prove the following results, which contribute in this direction:

• Dominating Set, Independent Dominating Set, Connected Dominating Set, Total Dominating Set, and Acyclic Dominating Set are W[1]-hard in circle graphs, parameterized by the size of the solution.
• Whereas both Connected Dominating Set and Acyclic Dominating Set are W[1]-hard in circle graphs, it turns out that Connected Acyclic Dominating Set is polynomial-time solvable in circle graphs.
• If T is a given tree, deciding whether a circle graph G has a dominating set inducing a graph isomorphic to T is NP-complete when T is in the input, and FPT when parameterized by t=|V(T)|. We prove that the FPT algorithm runs in subexponential time, namely $2^{\mathcal{O}(t \cdot\frac{\log\log t}{\log t})} \cdot n^{\mathcal{O}(1)}$ , where n=|V(G)|.

     

On Rewriting Rules in Mizar

This paper presents some tentative experiments in using a special case of rewriting rules in Mizar (Mizar homepage: http://www.mizar.org/): rewriting a term as its subterm. A similar technique, but based on another Mizar mechanism called functor identification (Korni?owicz 2009) was used by Caminati, in his paper on basic first-order model theory in Mizar (Caminati, J Form Reason 3(1):49–77, 2010, Form Math 19(3):157–169, 2011). However for this purpose he was obligated to introduce some artificial functors. The mechanism presented in the present paper looks promising and fits the Mizar paradigm.