STM study of Au adsorption on Si(111)-7 x 7 surface: voltage and temperature dependence

We presented the scanning tunneling microscopy (STM) results on the study of Au adsorption at Si(111)-7 x 7 reconstructed surface. The voltage-dependent STM measurements indicated that there are at least three kinds of Au clusters and two types of single Au atoms adsorption on Si(111)-7 x 7 surface with Au coverage of about 0.2 monolayer. After the Au adsorbed Si surface was annealed at about 250 degrees C, the adsorbed Au clusters would diffuse into the Si substrate, and consequently create surface defects on the Si substrate. Sequentially annealed the sample at about 500 degrees C, the diffused Au would emerge out again and form larger 3-dimension Au clusters at the Si surface.     

Unique ordered domains of biphenylthiol self-assembled monolayers on Au(111)

The surface structure and adsorption conditions of biphenylthiol (BPT) self-assembled monolayers (SAMs) on Au(111) were examined using scanning tunneling microscopy (STM) and X-ray photoelectron microscopy (XPS). STM imaging revealed that the structural order of BPT SAMs formed in a 0.01 mM ethanol solution at 60 degrees C decreases with increasing immersion time. Interestingly, BPT SAMs formed after 30 min have unique ordered domains containing well-ordered (square root of 3 x square root of 3)R30 degrees structures and bright rows that are connected by small aggregated domains with a periodicity of approximately 10 angstroms, results that have never been observed for other thiol SAM systems. Distances between the bright rows were 20-35 angstroms. The bright small domains contained five or six BPT molecules each, which may have originated from differences in the adsorption orientations of biphenyl groups that were induced by localized interactions between them. XPS measurements for BPT SAMs on Au(111) showed the two sulfur peaks at 161.2 and 162.2 eV, implying the formation of chemisorbed monolayers. Our results are anticipated to be useful for understanding the formation and structure of BPT SAMs on gold surfaces.     

Molecular-scale investigation of tolane disulfide self-assembled monolayers on Au(111) using scanning tunneling microscopy

Molecular-scale surface structures of self-assembled monolayers (SAMs) formed by the spontaneous adsorption of tolane disulfides (TDS) on Au(111) in a 1 mM mixed solution of ethanol/N, N'-dimethylformamide (9:1) were examined using scanning tunneling microscopy (STM). The STM study revealed that TDS SAMs formed after a 24 h immersion at room temperature were composed of two-dimensional (2D) ordered phases with inhomogeneous surface morphologies and no clear domain boundaries. However, after 2 h immersion at 50 degrees C, uniform 2D ordered domains with clear domain boundaries were observed, which could be described as c(3 x square root of 3) structures with centered rectangular unit cell. Interestingly, a unique intermediate ordered phase with a low surface coverage was also observed. After a longer immersion for 24 h at 50 degrees C, only the uniform c(3 x square root of 3) domains were observed with a corrugation that may have reflected surface reconstruction of the Au(111) surfaces. From this study, we found that 2D ordered TDS SAMs with large and uniform domains on Au(111) can be obtained by controlling the solution temperature and immersion time.     

Germanium adsorption on Ag(111): an AES-LEED and STM study

The adsorption of germanium on Ag(111) has been investigated using Scanning Tunneling Microscopy, Auger Electron Spectroscopy and Low Energy Electron Diffraction. From the shape of the Auger peak-to-peak versus time curves, we deduce that at room temperature the growth mode is nearly layer-by-layer at least for the first two layers. In the sub-monolayer range, the growth starts by the formation of a (mean square root of 3 x mean square root of 3)R30 degrees surface superstructure which is complete at 1/3 monolayer coverage. Beyond this coverage a rectangular c(mean square root of 3 x 7) superstructure is observed. STM images reveal that this last reconstruction is formed by an ordered arrangement of self-assembled Ge tetramers giving rise to a surprising undulation of the surface.     

Metal-free phthalocyanine (H2Pc) molecule adsorbed on the Au(111) surface: formation of a wide domain along a single lattice direction

Using low-temperature scanning tunneling microscopy (STM), we observed the bonding configuration of the metal-free phthalocyanine (H₂Pc) molecule adsorbed on the Au(111) surface. A local lattice formation started from a quasi-square lattice aligned to the close-packed directions of the Au(111) surface. Although we expected the lattice alignment to be equally distributed along the three crystallographically equivalent directions, the domain aligned normal to the ridge of the herringbone structure was missing in the STM images. We attribute this effect to the uniaxial contraction of the reconstructed Au(111) surface that can account for the formation of a large lattice domain along a single crystallographical direction.     

Metal-free phthalocyanine (H2Pc) molecule adsorbed on the Au(111) surface: formation of a wide domain along a single lattice direction

Abstract

Using low-temperature scanning tunneling microscopy (STM), we observed the bonding configuration of the metal-free phthalocyanine (H₂Pc) molecule adsorbed on the Au(111) surface. A local lattice formation started from a quasi-square lattice aligned to the close-packed directions of the Au(111) surface. Although we expected the lattice alignment to be equally distributed along the three crystallographically equivalent directions, the domain aligned normal to the ridge of the herringbone structure was missing in the STM images. We attribute this effect to the uniaxial contraction of the reconstructed Au(111) surface that can account for the formation of a large lattice domain along a single crystallographical direction.     

An alkyl spacer effect on the structure of 4-fluorobenzenethiol and 4-fluorobenzenemethanethiol self-assembled monolayers on Au(111)

Self-assembled monolayers (SAMs) formed by the adsorption of 4-fluorobenzenethiol (4-FBT) and 4-fluorobenzenemethanethiol (4-FBMT) on Au(111) were examined by scanning tunneling microscopy (STM) to understand the effect of a flexible methylene spacer between the sulfur head-group and phenyl group and the effect of solution temperature on the formation and structure of the SAMs. Although the adsorption of 4-FBT on Au(111) at room temperature for 24 h generated only disordered phase SAMs containing gold adatom islands, 4-FBT at 75 degrees C for 2 h formed mixed SAMs: disordered phases and ordered (2 x 12√(2))R10 degrees superlattice with a rectangular unit cell containing six adsorbed molecules. On the other hand, SAMs formed from 4-FBMT, with a methylene spacer, at room temperature for 24 h on Au(111) had irregularly ordered phases containing uniformly distributed VIs with lateral dimensions of 2-5 nm; SAMs formed from 4-FBMT at 75 degrees C for 2 h were composed of slightly improved ordered phases and larger VIs with lateral dimensions of 5-12 nm as a result of Ostwald ripening. From this study, we found that the methylene spacer plays an important role in controlling the structure of SAMs formed from p-substituted fluorinated aromatic thiols.     

Zinc porphyrin-driven assembly of gold nanofingers

Nanofingers of gold covered by porphyrins are prepared by a combination of atomic manipulation and surface self-organization. A submonolayer of zinc(II) 5,10,15,20-tetrakis(4-tert-butylphenyl)-porphyrin (ZnTBPP) axially ligated to a self-assembled monolayer of 4-aminothiophenol (4-ATP) on Au(111) is prepared and studied using a combination of ultrahigh vacuum techniques. Under the electric field produced by the STM tip, the relatively weakly bound Au surface atoms along the discommensuration lines become mobile due to the strong bond to 4-ATP, while the tendency of the porphyrins towards self-assembly result in a collective motion of gold clusters. The clusters diffuse onto the surface following well-defined pathways along the [112] direction and then reach the step edges where they assembled, thus forming nanofingers. First-principles density functional theory calculations demonstrate the reduction of the binding energies between the surface gold clusters and the substrate induced by adsorption of thiols. Scanning tunneling microscopy images show assemblies across three adjacent discommensuration lines of the Au(111)-(22 x square root 3) reconstruction, which collectively diffuse along these lines to form islands nucleated at step edges.     

Resonant electron tunneling through azurin in air and liquid by scanning tunneling microscopy

Electron transfer through the redox metalloprotein azurin immobilized on Au (111) by its disulphide bridge is studied by scanning tunneling microscopy (STM) in buffer solution and (for the first time) in air. STM analysis gives evidences of a stable and robust binding of the molecules in both cases. Bright spots, associated with azurin molecules, are clearly visible in STM images. The image contrast of adsorbed azurin is highly affected by the bias potential with proteins visible only for some well-defined voltage values. This experimental demonstration of the possibility to induce tunneling through azurin in air could disclose very interesting perspectives for the development of protein-based hybrid nanodevices operating in nonliquid environments.     

Nanoscale fabrication of myoglobin monolayer on self-assembled DTSSP for bioelectronic device

The fabrication method of nanoscale myoglobin monolayer using chemical linker is introduced in this study because control of amount and orientation of protein immobilized on electronic device is one of main issues to be solved for the realization of biomolecular electronic device. Myoglobin, metalloprotein, is selected as active material due to its electrochemical property. To immobilize myoglobin on Au surface, 3,3-dithiobis (sulphosuccinimidyl propionate) (DTSSP) is utilized as a chemical linker. The optimum amount of protein is investigated by surface plasmon resonance (SPR). SPR and scanning tunneling microscope (STM) results confirm the nano scale protein layer formed on DTSSP self assembled monolayer (SAM) on Au surface. Protein layer on Au surface using DTSSP as chemical linker was more stable than random adsorption without linker as aspect of redox character due to the fact that myoglobin immobilized with chemical linker did not lose its redox property after long usages.     

In-situ examination of the selective etching of an alkanethiol monolayer covered Au{111} surface

An examination of the selective etching mechanism of a 1-alkanethiol self-assembled monolayer (SAM) covered Au{111} surface using in-situ atomic force microscopy (AFM) and molecular resolution scanning tunnelling microscopy (STM) is presented. The monolayer self-assembles on a smooth Au{111} surface and typically contains nanoscale non-uniformities such as pinholes, domain boundaries and monatomic depressions. During etching in a ferri/ferrocyanide water-based etchant, selective and preferential etching occurs at SAM covered Au(111) terrace and step edges where a lower SAM packing density is observed, resulting in triangular islands being relieved. The triangular islands are commensurate with the Au(111) lattice with their long edges parallel to its [11¯0] direction. Thus, SAM etching is selective and preferential attack is localized to defects and step edges at sites of high molecular density contrast.     

Reconstructed structures of nanosized co islands on Ag/Ge(111) mean square root of 3 x mean square root of 3 surfaces

Structural evolution of Co/Ag/Ge(111) at high temperatures was studied by using scanning tunneling microscopy and low energy electron diffraction. The mean square root of 3 x mean square root of 3-Ag layer between the substrate Ge( 11) and Co adatoms can avoid the formation of Co-Ge compounds below 800 K. The Co atoms nucleate to form islands where mean square root of 13 x mean square root of 13 or 2 x 2 reconstructions were observed after annealing between 373 K and 737 K. The mean square root of 13 x mean square root of 13 structure with mirror symmetry relative to [-211], [11-2], and [1-21] axes was observed for 1-2 layer Co islands. Co islands with over 2 layers appear 2 x 2 structure. All reconstruction structures of the nano-sized Co islands and substrate Ag/Ge(111) mean square root of 3 x mean square root of 3 surface were analyzed using the atomic hard sphere model. The bright protrusions of these reconstructions all sit in the centers of Ag or Ge trimers, which were predicted to have maximum binding energy.     

Electrochemical scanning tunneling microscope imaging of self-assembled monolayer of double-stranded DNA on Au(111)

Self-assembled monolayer of a double-stranded DNA, which was formed by a 20-nt 5'-thiol-modified oligonucleotide at the interface of Au(111)/solution, has been imaged and studied with electrochemical scanning tunneling microscopy (ECSTM). The results showed that the preferred directions of the adsorbed DNA were <110> and <112>. The measured width of the DNA stripes was 0.95 +/- 0.02 nm, which was consistent with the width of dsDNA base pairs. The contour of DNA in the STM image consisted of a series of blobs, which were due to the anchoring of the bases to the substrate along the dsDNA chain. The imaging of a large-scale array of DNA lying flat on the substrate offers a convenient method for the further application of high-resolution STM to the study of the interaction between DNA and a variety of molecules.     

Transistor effects and in situ STM of redox molecules at room temperature

Inorganic transition metal complexes were identified as potential candidates for transistor-like behavior in an electrochemical scanning tunnelling microscope (STM) configuration at room temperature. The theoretical background has been established based on condensed matter charge transfer theory. It predicts a distinct increase of the tunnelling current close to the equilibrium potential, i.e., if molecular bridge states are tuned into resonance with the Fermi levels of the enclosing electrodes. The complexes display robust electrochemistry on Au(111) electrode surfaces. STM images at molecular resolution reveal detailed information on their surface structure and scanning tunnelling spectroscopy experiments have shown clear evidence of transistor-like behavior.     

Absolute configuration of monodentate phosphine ligand enantiomers on Cu(111)

Scanning tunneling microscopy (STM) has been employed to investigate the chirality of monophosphine compounds that are highly efficient chiral ligands in transition-metal-catalyzed organic transformations. The absolute configuration of 1-(2-diphenyphosphino-1-naphthyl)isoquinoline enantiomers with axial chirality was discriminated directly by the "marker" group, PPh(2) substitutes. Although the two enantiomer molecules adsorb on a Cu(111) surface and form well-defined (4 x 4) structures, the positions of PPh(2) substitutes in the molecular adlayers are different. The mirror symmetry between two adlayers is demonstrated. On the basis of STM results, structural models are proposed to interpret the chiral adsorption. The results presented here supply a straightforward method for axial chirality analysis in adsorbed adlayers by STM.     

Assembly behavior and monolayer characteristics of OH-terminated alkanethiol on Au(111): in situ scanning tunneling microscopy and electrochemical studies

Self-assembled monolayers (SAMs) of 6-mercapto-1-hexanol (MHO) on an Au(111) electrode were prepared in an electrochemical system. The adsorption behavior of MHO and the time-dependent organization of the SAM were investigated by in situ scanning tunneling microscopy (STM) and cyclic voltammetry (CV). The results show that a potential higher than 0.28?V (relative to RHE) is required to induce the adsorption of MHO. At 0.28?V, the MHO molecules adsorb in a flat-lying orientation, forming an ordered striped phase with a molecular arrangement of ([Formula: see text]). However, the adlayer is not stable at this potential. The adsorbed striped phase may recover to the herringbone feature of the gold substrate due to the desorption of adsorbed MHO. At a higher potential (0.35?V), the adlayer becomes stable and can undergo a phase evolution from the striped phase to a condensed structure, identified as c([Formula: see text]). This structure can also be described as a c(4 × 2) superlattice of a [Formula: see text] hexagonal adlattice. The surface coverage of the MHO SAM is identical to the saturated structure of an 11-mercapto-1-undecanol (MUO) SAM reported in a previous work, [Formula: see text]. However, the STM image of MHO adlayer shows a modulation in intensity, reflecting the presence of various conformations of adsorbed molecules. This result is attributed to the shorter chain length of MHO, which gives a weaker?van der Waals interaction between adsorbed molecules. This effect also results in a higher charge permeability across the adlayer and a lower striping potential to an MHO SAM.     

MgB2 Superconducting Tips for Scanning Tunneling Microscopy Study

We report a simple method for the fabrication of reproducible, clean, and stable MgB₂ superconducting tips. The quality of these tips has been verified by imaging the surface of a thin Au(111) film sample, using a low temperature scanning tunneling microscopy (STM). Using the MgB₂ superconducting tip, high-quality semiatomically resolved STM surface images of the thin Au(111) film sample have been observed, which unambiguously indicates that the fabrication of relatively superconducting MgB₂, suitable for use as STM tips, is feasible.     

Evaluation of molecular orientation and alignment of poly(3-hexylthiophene) on Au (111) and on poly(4-vinylphenol) surfaces

The orientation and alignment of regioregular poly(3-hexylthiophene) (P3HT) molecules on Au (111) surface and on poly(4-vinylphenol) (PVP) thin film were investigated. The P3HT molecules on the smooth Au (111) are oriented with both the backbones and the side chains parallel to the substrate (plane-on orientation) as revealed by the scanning tunneling microscope (STM) images. However, the P3HT molecules on the PVP thin films are preferably oriented with side chains perpendicular to the surface (edge-on orientation). Surface modification of the PVP by hexamethyldisilazane (HMDS) can increase the crystalline size in the P3HT semicrystalline films. The performance of an all-polymer organic field-effect transistor (OFET) with the drop-cast P3HT semiconductor layer and the crosslinked PVP gate insulator on poly(ethylene naphthalate) (PEN) substrate was evaluated.     

MgB2 Superconducting Tips for Scanning Tunneling Microscopy Study

We report a simple method for the fabrication of reproducible, clean, and stable MgB₂ superconducting tips. The quality of these tips has been verified by imaging the surface of a thin Au(111) film sample, using a low temperature scanning tunneling microscopy (STM). Using the MgB₂ superconducting tip, high-quality semiatomically resolved STM surface images of the thin Au(111) film sample have been observed, which unambiguously indicates that the fabrication of relatively superconducting MgB₂, suitable for use as STM tips, is feasible.     

X-ray-diffraction characterization of Pt(111) surface nanopatterning induced by C60 adsorption

Understanding the adsorption mechanisms of large molecules on metal surfaces is a demanding task. Theoretical predictions are difficult because of the large number of atoms that have to be considered in the calculations, and experiments aiming to solve the molecule-substrate interaction geometry are almost impossible with standard laboratory techniques. Here, we show that the adsorption of complex organic molecules can induce perfectly ordered nanostructuring of metal surfaces. We use surface X-ray diffraction to investigate in detail the bonding geometry of C(60) with the Pt(111) surface, and to elucidate the interaction mechanism leading to the restructuring of the Pt(111) surface. The chemical interaction between one monolayer of C(60) molecules and the clean Pt(111) surface results in the formation of an ordered sqrt[13] x sqrt[13]R13.9 degrees reconstruction based on the creation of a surface vacancy lattice. The C(60) molecules are located on top of the vacancies, and 12 covalent bonds are formed between the carbon atoms and the 6 platinum surface atoms around the vacancies. In-plane displacements induced on the platinum substrate are of the order of a few picometres in the top layer, and are undetectable in the deeper layers.