Controlled lateral manipulation of molecules on insulating films by STM

On metallic and semiconductor surfaces functional nanostructures can be built with atomic scale precision using the tip of an atomic force microscope/scanning tunneling microscope. In contrast, controlled lateral manipulation on insulators has not been reported. The traditional pushing and pulling based manipulation methods cannot be used for molecules adsorbed on insulating films because of the unfavorable ratio between diffusion barrier and desorption energy. Here, we demonstrate that molecules adsorbed on insulating films can be laterally manipulated in a controlled way by injecting inelastically tunneling electrons at well-defined positions in a molecule. The technique was successfully applied to several different molecules.     

Exploring the interatomic forces between tip and single molecules during STM manipulation

The interaction between a single molecule and the STM tip during intramolecular manipulation is investigated in detail. We show that the conformational change of complex organic molecules can be induced reversibly and very reliably by using exclusively attractive forces. By studying the dependence of this process on the bias voltage and the tip position, the driving forces are characterized. Different regimes of tip-molecule interactions are observed as a function of the distance.     

Investigation of twin-wall structure at the nanometre scale using atomic force microscopy

The structure of twin walls and their interaction with defects has important implications for the behaviour of a variety of materials including ferroelectric, ferroelastic, co-elastic and superconducting crystals. Here, we present a method for investigating the structure of twin walls with nanometre-scale resolution. In this method, the surface topography measured using atomic force microscopy is compared with candidate displacement fields, and this allows for the determination of the twin-wall thickness and other structural features. Moreover, analysis of both complete area images and individual line-scan profiles provides essential information about local mechanisms of twin-wall broadening, which cannot be obtained by existing experimental methods. The method is demonstrated in the ferroelectric material PbTiO(3), and it is shown that the accumulation of point defects is responsible for significant broadening of the twin walls. Such defects are of interest because they contribute to the twin-wall kinetics and hysteresis.     

Spin doping of individual molecules by using single-atom manipulation

Being able to control the spin of magnetic molecules at the single-molecule level will make it possible to develop new spin-based nanotechnologies. Gate-field effects and electron and photon excitations have been used to achieve spin switching in molecules. Here, we show that atomic doping of molecules can be used to change the molecular spin. Furthermore, a scanning tunneling microscope was used to place or remove the atomic dopant on the molecule, allowing us to change the molecular spin in a controlled way. Bis(phthalocyaninato)yttrium (YPc(2)) molecules deposited on an Au (111) surface keep their spin-1/2 magnetic moment due to the small molecule-substrate interaction. However, when Cs atoms were carefully placed onto YPc(2) molecules, the spin of the molecule vanished as shown by our conductance measurements and corroborated by the results of density functional theory calculations.     

STM manipulation of molecular moulds on metal surfaces

Molecular Landers are a class of compounds containing an aromatic board as well as bulky side groups which upon adsorption of the molecule on a surface may lift the molecular board away from the substrate. Different molecular Landers have extensively been studied as model systems for nanomachines and the formation of molecular wires, as well as for their function as “molecular moulds”, i.e., acting as templates by accommodating metal atoms underneath their aromatic board. Here, we investigate the adsorption of a novel Lander molecule 1,4-bis(4-(2,4-diaminotriazine)phenyl)-2,3,5,6-tetrakis(4-tert-butylphenyl)benzene (DAT, C₆₄H₆₈N₁₀) on Cu(110) and Au(111) surfaces under ultrahigh vacuum (UHV) conditions. By means of scanning tunneling microscopy (STM) imaging and manipulation, we characterize the morphology and binding geometries of DAT molecules at terraces and step edges. On the Cu(110) surface, various contact configurations of individual DAT Landers were formed at the step edges in a controlled manner, steered by STM manipulation, including lateral translation, rotation, and pushing molecules to an upper terrace. The diffusion barrier of single DAT molecules on Au(111) is considerably smaller than on Cu(110). The DAT Lander is specially designed with diamino-triazine side groups making it suitable for future studies of molecular self-assembly by hydrogen-bonding interactions. The results presented here are an important guide to the choice of substrate for future studies using this compound. This article is published with open access at Springerlink.com These authors contributed equally to this work     

Transistor effects and in situ STM of redox molecules at room temperature

Inorganic transition metal complexes were identified as potential candidates for transistor-like behavior in an electrochemical scanning tunnelling microscope (STM) configuration at room temperature. The theoretical background has been established based on condensed matter charge transfer theory. It predicts a distinct increase of the tunnelling current close to the equilibrium potential, i.e., if molecular bridge states are tuned into resonance with the Fermi levels of the enclosing electrodes. The complexes display robust electrochemistry on Au(111) electrode surfaces. STM images at molecular resolution reveal detailed information on their surface structure and scanning tunnelling spectroscopy experiments have shown clear evidence of transistor-like behavior.     

Nanochemistry at the atomic scale revealed in hydrogen-induced semiconductor surface metallization

Passivation of semiconductor surfaces against chemical attack can be achieved by terminating the surface-dangling bonds with a monovalent atom such as hydrogen. Such passivation invariably leads to the removal of all surface states in the bandgap, and thus to the termination of non-metallic surfaces. Here we report the first observation of semiconductor surface metallization induced by atomic hydrogen. This result, established by using photo-electron and photo-absorption spectroscopies and scanning tunnelling techniques, is achieved on a Si-terminated cubic silicon carbide (SiC) surface. It results from competition between hydrogen termination of surface-dangling bonds and hydrogen-generated steric hindrance below the surface. Understanding the ingredient for hydrogen-stabilized metallization directly impacts the ability to eliminate electronic defects at semiconductor interfaces critical for microelectronics, provides a means to develop electrical contacts on high-bandgap chemically passive materials, particularly for interfacing with biological systems, and gives control of surfaces for lubrication, for example of nanomechanical devices.     

Burning match oxidation process of silicon nanowires screened at the atomic scale

Silicon oxide nanowires hold great promise for functional nanoscale electronics. Here, we investigate the oxidation of straight, massively parallel, metallic Si nanowires. We show that the oxidation process starts at the Si NW terminations and develops like a burning match. While the spectroscopic signatures on the virgin, metallic part, are unaltered we identify four new oxidation states on the oxidized part, which show a gap opening, thus revealing the formation of a transverse internal nanojunction.     

Shape and complexity at the atomic scale: the case of layered nanomaterials

In nature there are numerous layered compounds, some of which could be curved so as to form fascinating nanoshapes with novel properties. Graphite is at present the main example of a very flexible layered structure, which is able to form cylinders (nanotubes) and cages (fullerenes), but there are others. While fullerenes possess positive curvature due to pentagonal rings of carbon, there are other structures which could include heptagonal or higher membered rings. In fact, fullerenes and nanotubes could display negative curvature, thus forming nanomaterials possessing unexpected electronic and mechanical properties. The effect of curvature in other nano-architectures, such as in boron nitride and metal dichalcogenides, is also discussed in this account. Electron irradiation is a tool able to increase the structural complexity of layered materials. In this context, we describe the coalescence of carbon nanotubes and C(60) molecules. The latter results now open up an alternative approach to producing and manipulating novel nanomaterials in the twenty-first century.     

Shedding light on the crystallographic etching of multi-layer graphene at the atomic scale

The controlled etching of graphite and graphene by catalytic hydrogenation is potentially a key engineering route for the fabrication of graphene nanoribbons with atomic precision. The hydrogenation mechanism, though, remains poorly understood. In this study we exploit the benefits of aberration-corrected high-resolution transmission electron microscopy to gain insight to the hydrogenation reaction. The etch tracks are found to be commensurate with the graphite lattice. Catalyst particles at the head of an etch channel are shown to be faceted and the angles between facets are multiples of 30°. Thus, the angles between facets are also commensurate with the graphite lattice. In addition, the results of a post-annealing step suggest that all catalyst particles—even if they are not involved in etching—are actively forming methane during the hydrogenation reaction. Furthermore, the data point against carbon dissolution being a key mechanism during the hydrogenation process.      

Electronic transport in carbon nanotubes with random coverage of physisorbed molecules

The chemical sensitivity of electronic transport in carbon nanotubes under the physisorption of molecular species is investigated using a tight-binding scheme, parametrized by first-principles calculations. Such a computational method enables tackling of the complex electronic properties of chemically grafted conducting nanotubes. Our calculations demonstrate that the impact of physisorption on the transport regime critically depends on the HOMO-LUMO gap of the attached molecules. In addition, the electronic mean free path exhibits a downscaling law with a lower dependence on the coverage density of grafted molecules than for conventional substitutional doping or homogeneous disorder.     

Parallel manipulation of bifunctional DNA molecules on structured surfaces using kinesin-driven microtubules

We have developed a technique to manipulate bifunctional DNA molecules: One end is thiolated to bind to a patterned gold surface and the other end is biotinylated to bind to a microtubule gliding over a kinesin-coated surface. We found that DNA molecules can be stretched and overstretched between the gold pads and the motile microtubules, and that they can form dynamic networks. This serves as a proof-of-principle that biological machineries can be used in vitro to accomplish the parallel formation of structured DNA templates that will have applications in biophysics and nanoelectronics.     

Detection of abasic sites on individual DNA molecules using atomic force microscopy

We have developed an atomic force microscopy-based method for detecting abasic sites (AP sites) on individual DNA molecules. By using uracil and uracil DNA glycosylase, we first prepared a 250-bp DNA template consisting of two AP sites at specific locations. We then detected the AP sites by marking them with biotinylated aldehyde-reactive probes and monomeric avidin. We demonstrate here that (i) the location of monomeric avidin bound on a single DNA molecule was detectable by atomic force microscopy; (ii) the observed location of avidin was in good agreement to the predicted AP sites at a few nanometer resolution; and (iii) by end-labeling the 5'-terminus of one DNA strand, the AP sites were determined without directional ambiguity. The technique described here will provide a sensitive way of locating AP sites and contribute to screen DNA damages from individual molecules.     

Probing charge transfer at surfaces using graphene transistors

Graphene field effect transistors (FETs) are extremely sensitive to gas exposure. Charge transfer doping of graphene FETs by atmospheric gas is ubiquitous but not yet understood. We have used graphene FETs to probe minute changes in electrochemical potential during high-purity gas exposure experiments. Our study shows quantitatively that electrochemistry involving adsorbed water, graphene, and the substrate is responsible for doping. We not only identify the water/oxygen redox couple as the underlying mechanism but also capture the kinetics of this reaction. The graphene FET is highlighted here as an extremely sensitive potentiometer for probing electrochemical reactions at interfaces, arising from the unique density of states of graphene. This work establishes a fundamental basis on which new electrochemical nanoprobes and gas sensors can be developed with graphene.     

Virtual texture analysis to investigate the deformation mechanisms in metal microstructures at the atomic scale

Journal of Materials Science - Understanding the deformation behavior of metallic materials at high strain rates requires the characterization of plasticity contributors, such as twins, phase...     

Interaction potential and friction of hydrogenated diamond surfaces at the atomic scale: first-principle calculation

Interaction potential plays a vital role on the friction. Potential energy of two contacts directly determines on the friction force. However, many mathematic models proposed, always abandon the instantaneous status during sliding to devote to a weighted average over lateral force, which might miss some information about friction behavior. In this work, the relation among potential energies, separation distances of two contracts, and positions in the sliding direction are studied to evaluate the instantaneous friction characteristics. Two hydrogenated diamond surfaces are used as the examined model. The results show that a watershed between positive and negative friction forces locates at the position with the minimum adsorption energy. A rapid decrease in potential energy occurs near the 2.5 nN external force, where the friction coefficient approaches zero at each position in the sliding direction. Therefore, a novel method may be developed to greatly reduce the friction coefficient between two surfaces by adjusting the contract pressure.