Photonics and Optoelectronics with Bacteria: Making Materials from Photosynthetic Microorganisms

A critical selection of the recent literature reports on the use of photosynthetic and photoresponsive bacteria as a source of materials for optoelectronics and photonic devices is discussed, together with the applications foreseen in solar energy conversion and storage and light information technologies. The use of both photoactive cellular components and entire living cells is reviewed, aiming to highlight the great conceptual impact of these studies. These studies point out possible deep changes in the paradigm of design, and synthesis of materials and devices for optoelectronics. Although the possible technological impact of this technology is still hard to be predicted, these studies advance the understanding of photonics of living organisms and develop new intriguing concepts in biomaterials research.     

In Situ Photocatalyzed Oxygen Generation with Photosynthetic Bacteria to Enable Robust Immunogenic Photodynamic Therapy in Triple‐Negative Breast Cancer

Hypoxia in the tumor microenvironment is a major hurdle dampening the antitumor effect of photodynamic therapy (PDT). Herein, active photosynthetic bacteria (Synechococcus 7942, Syne) are utilized for tumor‐targeted photosensitizer delivery and in situ photocatalyzed oxygen generation to achieve photosynthesis‐boosted PDT. Photosensitizer‐encapsulated nanoparticles (HSA/ICG) are assembled by intermolecular disulfide crosslinking and attached to the surface of Syne with amide bonds to form a biomimetic system (S/HSA/ICG). S/HSA/ICG combined the photosynthetic capability of Syne and the theranostic effect of HSA/ICG. Syne capable of photoautotrophy exhibit a moderate immune stimulation effect and a certain photodynamic role under 660 nm laser irradiation. Upon intravenous injection into tumor‐bearing mice, S/HSA/ICG can effectively accumulate in tumors and generate oxygen continuously under laser irradiation through photosynthesis, which remarkably relieve tumor hypoxia and enhance reactive oxygen species production, thereby completely eliminating primary tumors. This photosynthesis‐boosted PDT can also effectively reverse the tumor immunosuppressive microenvironment and robustly evoke systematic antitumor immune responses, which exhibit excellent effect on preventing tumor recurrence and metastasis inhibition in a metastatic triple‐negative breast cancer mouse model. Hence, this photosynthetic bacteria‐based photosynthesis‐boosted immunogenic PDT offers a promising approach to eliminate both local and metastatic tumors.     

Artificial Magnetic Bacteria: Living Magnets at Room Temperature

Biogenic magnetite is a fascinating example of how nature can generate functional magnetic nanostructures. Inspired by the magnetic bacteria, an attempt is made to mimic their magnetic properties, rather than their structures, to create living magnets at room temperature. The non‐magnetic probiotic bacteria Lactobacillus fermentum and Bifidobacteria breve are used as bioplatforms to densely arrange superparamagnetic nanoparticles on their external surfaces, thus obtaining the artificial magnetic bacteria. Magnetic probiotic bacteria can be produced by using superparamagnetic maghemite nanoparticles assembled at their surfaces. They present a collective ferromagnetic phase at room temperature. The blocking temperature of these maghemite nanoparticles increases more than 100 K when assembled at the artificial magnetic bacteria.     

Microbial-Enabled Photosynthetic Oxygenation for Disease Treatment

Oxygen as one of the most critical substances in living organisms has attracted ever-increasing attention in disease treatment, which is important in regulating metabolic activities. However, the hypoxia arising from disease is a prevalent problem, leading to observably reduced therapeutic effectiveness in photodynamic therapy, radiotherapy, sonodynamic therapy, etc. Therefore, the reversion of hypoxia becomes the basis for enhancing the disease treatment. Thanks to the development of nanotechnology, various nanomaterials with oxygen-production capacity are explored to recover the function of oxygen in tissue, but there are still some limitations. The photosynthetic microorganisms (PSMs) are extensively applied for improving hypoxia in diseases due to their highly efficient photocatalytic oxygen production efficacy and desirable biocompatibility. In this review, the up-to-date research progress on therapeutic modalities of microbial-based photosynthetic oxygenation (e.g., cancer treatment, wound healing, and tissue engineering) are summarized and highlighted. In addition, the key issue of biocompatibility/biosafety of microbial-based treatment that is fundamental to apply in vivo is further emphasized and clarified. Finally, the present critical issues are discussed and the future evolution of microbial-based treatment based on photosynthetic oxygenation is predicted, promoting further development and clinical applications.     

Bioprinting of Regenerative Photosynthetic Living Materials

Living materials, which are fabricated by encapsulating living biological cells within a non-living matrix, have gained increasing attention in recent years. Their fabrication in spatially defined patterns that are mechanically robust is essential for their optimal functional performance but is difficult to achieve. Here, a bioprinting technique employing environmentally friendly chemistry to encapsulate microalgae within an alginate hydrogel matrix is reported. The bioprinted photosynthetic structures adopt pre-designed geometries at millimeter-scale resolution. A bacterial cellulose substrate confers exceptional advantages to this living material, including strength, toughness, flexibility, robustness, and retention of physical integrity against extreme physical distortions. The bioprinted materials possess sufficient mechanical strength to be self-standing, and can be detached and reattached onto different surfaces. Bioprinted materials can survive stably for a period of at least 3 days without nutrients, and their life can be further extended by transferring them to a fresh source of nutrients within this timeframe. These bioprints are regenerative, that is, they can be reused and expanded to print additional living materials. The fabrication of the bioprinted living materials can be readily up-scaled (up to ≥70 cm × 20 cm), highlighting their potential product applications including artificial leaves, photosynthetic bio-garments, and adhesive labels.     

Magnetic Nanoparticle Chains in Gelatin Ferrogels: Bioinspiration from Magnetotactic Bacteria

Inspired by chains of ferrimagnetic nanocrystals (NCs) in magnetotactic bacteria (MTB), the synthesis and detailed characterization of ferrimagnetic magnetite NC chain‐like assemblies is reported. An easy green synthesis route in a thermoreversible gelatin hydrogel matrix is used. The structure of these magnetite chains prepared with and without gelatin is characterized by means of transmission electron microscopy, including electron tomography (ET). These structures indeed bear resemblance to the magnetite assemblies found in MTB, known for their mechanical flexibility and outstanding magnetic properties and known to crystallographically align their magnetite NCs along the strongest <111> magnetization easy axis. Using electron holography (EH) and angular dependent magnetic measurements, the magnetic interaction between the NCs and the generation of a magnetically anisotropic material can be shown. The electro‐ and magnetostatic modeling demonstrates that in order to precisely determine the magnetization (by means of EH) inside chain‐like NCs assemblies, their exact shape, arrangement and stray‐fields have to be considered (ideally obtained using ET).     

细菌驱动微转子马达

日本国家高级工业科学与技术研究所的一个研究组正在利用快速移动的细菌来驱动微转子马达，这是第一个在无机材料中加进了细菌的微机械器件。这种生物分子马达能比传统的马达更有效的将化学能转化为机械能，还能在大型结构中发挥自修复和自组织的潜能，有望用在微型机器人和微小电子系统中。     

基于变异算子的细菌觅食优化算法研究

为了提高细菌觅食算法的优化性能,基于变异算子对细菌觅食优化算法进行了改进设计。在每次迭代时,以一定的概率选中细菌进行变异扰动,从而克服细菌觅食优化算法可能出现的早熟收敛及收敛速度慢的问题。数值仿真结果表明,这种基于变异算子的细菌觅食优化算法,在搜索精度、收敛速度及算法稳定性等方面均优于已有的细菌觅食优化算法。     

Nano and Microtechnologies for the Study of Magnetotactic Bacteria

Magnetotactic bacteria (MTB) naturally synthesize magnetic nanoparticles that are wrapped in lipid membranes. These membrane‐bound particles, which are known as magnetosomes, are characterized by their narrow size distribution, high colloidal stability, and homogenous magnetic properties. These characteristics of magnetosomes confer them with significant value as materials for biomedical and industrial applications. MTB are also a model system to study key biological questions relating to formation of bacterial organelles, metal homeostasis, biomineralization, and magnetoaerotaxis. The similar size scale of nano and microfluidic systems to MTB and ease of coupling to local magnetic fields make them especially useful to study and analyze MTB. In this Review, a summary of nano‐ and microtechnologies that are developed for purposes such as MTB sorting, genetic engineering, and motility assays is provided. The use of existing platforms that can be adapted for large‐scale MTB processing including microfluidic bioreactors is also described. As this is a relatively new field, future synergistic research directions coupling MTB, and nano‐ and microfluidics are also suggested. It is hoped that this Review could start to bridge scientific communities and jump‐start new ideas in MTB research that can be made possible with nano‐ and microfluidic technologies.     

Living Bacteria in Thermoresponsive Gel for Treating Fungal Infections

The leading living bacteria formulations currently available are from a limited list of genera and are generally limited to gastrointestinal tract syndromes. A formulation composed of living Bacillus subtilis incorporated in a thermoresponsive hydrogel that hardens after administration on the skin and continuously produces antifungal agents is described. The ability of the formula to support bacteria growth and its mechanical properties and penetrability through the skin are fine‐tuned by varying the ratio between polymer concentrations and bacterial media. The formula penetrates via the stratum corneum and accumulates in the epidermis without penetrating the inner, dermis layer. In vivo results mirror the results seen in vitro: bacillus formulations completely inhibit candida growth, demonstrating clinical effects comparable to those achieved by ketoconazole. LC‐MS/MS analysis of the bacterial formulation confirms the presence of surfactin, the most powerful biosurfactant that possesses a broad antifungal activity. This platform may enable rational design of novel formulations composed of secreting bacteria inside a responsive, smart, hydrogel—which is the prerequisite for producing a successful drug delivery system.     

菌群细胞图像分离算法研究

颗粒图像分析中聚堆目标的分离对目标的计数及特征的提取非常重要.现有分离算法都要求聚堆目标粘连处凹陷比较明显,并且/或者存在灰度局部最小边缘.菌群聚堆细胞大小不一、聚堆形态各异,多数聚堆细胞并不具备上述条件.文中提出了一种基于聚堆区域轮廓跟踪、删除的分离算法,依据跟踪"虫"在跟踪过程中遇到已跟踪过轮廓点的情况判断分离的进行.实验结果表明算法对菌群聚堆细胞分离的成功率要高于现有算法10%以上.