Engineered turns of a recombinant antibody improve its in vivo folding

Using recombinant antibodies functionally expressed by secretionto the periplasm in Escherichia coli as a model system, we identifiedmutations located in turns of the protein which reduce the formationof aggregates during in vivo folding or which influence cellstability during expression. Unexpectedly, the two effects arebased on different mutations and could be separated, but bothmutations act synergistically in vivo. Neither mutation increasesthe thermodynamic stability in vitro. However, the in vivo foldingmutation correlates with the yield of oxidative folding in vitro,which is limited by the side reaction of aggregation. The invivo folding data also correlate with the rate and activationentropy of thermally induced aggregation. This analysis showsthat it is possible to engineer improved frameworks for semi-syntheticantibody libraries which may be important in maintaining librarydiversity. Moreover, limitations in recombinant protein expressioncan be overcome by single amino acid substitutions.     

Helicoverpa zea CYP6B8 and CYP321A1: different molecular solutions to the problem of metabolizing plant toxins and insecticides

Under continual exposure to naturally occurring plant toxins and synthetic insecticides, insects have evolved cytochrome P450 monooxygenases (P450s) capable of metabolizing a wide range of structurally different compounds. Two such P450s, CYP6B8 and CYP321A1, expressed in Helicoverpa zea (a lepidopteran) in response to plant allelochemicals and plant signaling molecules metabolize these compounds with varying efficiencies. While sequence alignments of these proteins indicate highly divergent substrate recognition sites (SRSs), homology models developed for them indicate that the two active site cavities have essentially the same volume with distinct shapes dictated by side-chain differences in SRS1 and SRS5. CYP6B8 has a narrower active site cavity extending from substrate access channel pw2a with a very narrow access to the ferryl oxygen atom. This predicted shape suggests that bulkier molecules bind further from the ferryl oxygen at positions that are not as effectively metabolized. In contrast, CYP321A1 is predicted to have a more spacious cavity allowing larger molecules to access the heme-bound oxygen. The metabolic profiles for several plant toxins (xanthotoxin, angelicin) and insecticides (cypermethrin, aldrin and diazinon) correlate well with these predictive models. The absence of Thr in the I helix of CYP321A1 and hydroxyl groups on many of its substrates suggests that this insect P450 mediates oxygen activation by a mechanism different from that employed by CYP107A1 and CYP158A1, which are two bacterial P450s also lacking Thr in their I helix, and most other P450s that contain Thr in their I helix.     

Relation of glass transition temperature to the hydrogen bonding degree and energy in poly(N-vinyl pyrrolidone) blends with hydroxyl-containing plasticizers: 3. Analysis of two glass transition temperatures featured for PVP solutions in liquid poly(ethylene glycol)

The phase behaviour of poly(N-vinyl pyrrolidone)-poly(ethylene glycol) (PVP-PEG) blends has been examined in the entire composition range using Temperature Modulated Differential Scanning Calorimetry (TM-DSC) and conventional DSC techniques. Despite the unlimited solubility of PVP in oligomers of ethylene glycol, the PVP-PEG system under consideration demonstrates two distinct and mutually consistent glass transition temperatures (T_g) within a certain concentration region. The dissolution of PVP in oligomeric PEG has been shown earlier (by FTIR spectroscopy) to be due to hydrogen bonding between carbonyl groups in PVP repeat units and complementary hydroxyl end-groups of PEG chains. Forming two H-bonds through both terminal OH-groups, PEG acts as a reversible crosslinker of PVP macromolecules. To characterise the hydrogen bonded complex formation between PVP (M_w=10⁶) and PEG (M_w=400) we employed an approach described in the first two papers of this series that is based on the modified Fox equation. We evaluated the fraction of crosslinked PVP units and PEG chains participating to the complex formation, the H-bonded network density, the equilibrium constant of complex formation, etc. Based on the established molecular details of self-organisation in PVP-PEG solutions, we propose a three-stage mechanism of PVP-PEG H-bonded complex formation/breakdown with increase of PEG content. The two observed T_gs are assigned to a coexisting PVP-PEG network (formed via multiple hydrogen bonding between a PEG and PVP) and a homogeneous PVP-PEG blend (involving a single hydrogen bond formation only). Based on the strong influence of coexisting regions on each other and the absence of signs of phase separation (evidenced by Optical Wedge Microinterferometry) we conclude that the PVP-PEG blend is fully miscible on a molecular scale.