A generalized automatic clustering algorithm in a multiobjective framework

In this paper a new multiobjective (MO) clustering technique (GenClustMOO) is proposed which can automatically partition the data into an appropriate number of clusters. Each cluster is divided into several small hyperspherical subclusters and the centers of all these small sub-clusters are encoded in a string to represent the whole clustering. For assigning points to different clusters, these local sub-clusters are considered individually. For the purpose of objective function evaluation, these sub-clusters are merged appropriately to form a variable number of global clusters. Three objective functions, one reflecting the total compactness of the partitioning based on the Euclidean distance, the other reflecting the total symmetry of the clusters, and the last reflecting the cluster connectedness, are considered here. These are optimized simultaneously using AMOSA, a newly developed simulated annealing based multiobjective optimization method, in order to detect the appropriate number of clusters as well as the appropriate partitioning. The symmetry present in a partitioning is measured using a newly developed point symmetry based distance. Connectedness present in a partitioning is measured using the relative neighborhood graph concept. Since AMOSA, as well as any other MO optimization technique, provides a set of Pareto-optimal solutions, a new method is also developed to determine a single solution from this set. Thus the proposed GenClustMOO is able to detect the appropriate number of clusters and the appropriate partitioning from data sets having either well-separated clusters of any shape or symmetrical clusters with or without overlaps. The effectiveness of the proposed GenClustMOO in comparison with another recent multiobjective clustering technique (MOCK), a single objective genetic algorithm based automatic clustering technique (VGAPS-clustering), K-means and single linkage clustering techniques is comprehensively demonstrated for nineteen artificial and seven real-life data sets of varying complexities. In a part of the experiment the effectiveness of AMOSA as the underlying optimization technique in GenClustMOO is also demonstrated in comparison to another evolutionary MO algorithm, PESA2.     

Data clustering using bacterial foraging optimization

Clustering divides data into meaningful or useful groups (clusters) without any prior knowledge. It is a key technique in data mining and has become an important issue in many fields. This article presents a new clustering algorithm based on the mechanism analysis of Bacterial Foraging (BF). It is an optimization methodology for clustering problem in which a group of bacteria forage to converge to certain positions as final cluster centers by minimizing the fitness function. The quality of this approach is evaluated on several well-known benchmark data sets. Compared with the popular clustering method named k-means algorithm, ACO-based algorithm and the PSO-based clustering technique, experimental results show that the proposed algorithm is an effective clustering technique and can be used to handle data sets with various cluster sizes, densities and multiple dimensions.     

A symmetry based multiobjective clustering technique for automatic evolution of clusters

In this paper the problem of automatic clustering a data set is posed as solving a multiobjective optimization (MOO) problem, optimizing a set of cluster validity indices simultaneously. The proposed multiobjective clustering technique utilizes a recently developed simulated annealing based multiobjective optimization method as the underlying optimization strategy. Here variable number of cluster centers is encoded in the string. The number of clusters present in different strings varies over a range. The points are assigned to different clusters based on the newly developed point symmetry based distance rather than the existing Euclidean distance. Two cluster validity indices, one based on the Euclidean distance, XB-index, and another recently developed point symmetry distance based cluster validity index, Sym-index, are optimized simultaneously in order to determine the appropriate number of clusters present in a data set. Thus the proposed clustering technique is able to detect both the proper number of clusters and the appropriate partitioning from data sets either having hyperspherical clusters or having point symmetric clusters. A new semi-supervised method is also proposed in the present paper to select a single solution from the final Pareto optimal front of the proposed multiobjective clustering technique. The efficacy of the proposed algorithm is shown for seven artificial data sets and six real-life data sets of varying complexities. Results are also compared with those obtained by another multiobjective clustering technique, MOCK, two single objective genetic algorithm based automatic clustering techniques, VGAPS clustering and GCUK clustering.     

Agglomerative Fuzzy K-Means Clustering Algorithm with Selection of Number of Clusters

In this paper, we present an agglomerative fuzzy $k$-means clustering algorithm for numerical data, an extension to the standard fuzzy $k$-means algorithm by introducing a penalty term to the objective function to make the clustering process not sensitive to the initial cluster centers. The new algorithm can produce more consistent clustering results from different sets of initial clusters centers. Combined with cluster validation techniques, the new algorithm can determine the number of clusters in a data set, which is a well known problem in $k$-means clustering. Experimental results on synthetic data sets (2 to 5 dimensions, 500 to 5000 objects and 3 to 7 clusters), the BIRCH two-dimensional data set of 20000 objects and 100 clusters, and the WINE data set of 178 objects, 17 dimensions and 3 clusters from UCI, have demonstrated the effectiveness of the new algorithm in producing consistent clustering results and determining the correct number of clusters in different data sets, some with overlapping inherent clusters.     

An Algorithm for Clustering Using L1‐Norm Based on Hyperbolic Smoothing Technique

Cluster analysis deals with the problem of organization of a collection of objects into clusters based on a similarity measure, which can be defined using various distance functions. The use of different similarity measures allows one to find different cluster structures in a data set. In this article, an algorithm is developed to solve clustering problems where the similarity measure is defined using the L₁‐norm. The algorithm is designed using the nonsmooth optimization approach to the clustering problem. Smoothing techniques are applied to smooth both the clustering function and the L₁‐norm. The algorithm computes clusters sequentially and finds global or near global solutions to the clustering problem. Results of numerical experiments using 12 real‐world data sets are reported, and the proposed algorithm is compared with two other clustering algorithms.     

基于基因表达式编程的多目标自动聚类算法

聚类是将物理或抽象对象的集合分成由类似的对象组成的多个类(簇)的过程.同一个簇中的对象彼此相似,而不同簇中的对象差异较大.以基因表达式编程算法为基础,结合新设计的广义聚类代数算子和目标优化函数,提出一种基于基因表达式编程的多目标自动聚类算法(MAGEP-Cluster).该算法不仅可以自动确定最优聚类的数目,还可以同时...     

ECM: An evidential version of the fuzzy c-means algorithm

A new clustering method for object data, called ECM (evidential c-means) is introduced, in the theoretical framework of belief functions. It is based on the concept of credal partition, extending those of hard, fuzzy, and possibilistic ones. To derive such a structure, a suitable objective function is minimized using an FCM-like algorithm. A validity index allowing the determination of the proper number of clusters is also proposed. Experiments with synthetic and real data sets show that the proposed algorithm can be considered as a promising tool in the field of exploratory statistics.     

A new multiobjective clustering technique based on the concepts of stability and symmetry

Most clustering algorithms operate by optimizing (either implicitly or explicitly) a single measure of cluster solution quality. Such methods may perform well on some data sets but lack robustness with respect to variations in cluster shape, proximity, evenness and so forth. In this paper, we have proposed a multiobjective clustering technique which optimizes simultaneously two objectives, one reflecting the total cluster symmetry and the other reflecting the stability of the obtained partitions over different bootstrap samples of the data set. The proposed algorithm uses a recently developed simulated annealing-based multiobjective optimization technique, named AMOSA, as the underlying optimization strategy. Here, points are assigned to different clusters based on a newly defined point symmetry-based distance rather than the Euclidean distance. Results on several artificial and real-life data sets in comparison with another multiobjective clustering technique, MOCK, three single objective genetic algorithm-based automatic clustering techniques, VGAPS clustering, GCUK clustering and HNGA clustering, and several hybrid methods of determining the appropriate number of clusters from data sets show that the proposed technique is well suited to detect automatically the appropriate number of clusters as well as the appropriate partitioning from data sets having point symmetric clusters. The performance of AMOSA as the underlying optimization technique in the proposed clustering algorithm is also compared with PESA-II, another evolutionary multiobjective optimization technique.     

KNN-kernel density-based clustering for high-dimensional multivariate data

Density-based clustering algorithms for multivariate data often have difficulties with high-dimensional data and clusters of very different densities. A new density-based clustering algorithm, called KNNCLUST, is presented in this paper that is able to tackle these situations. It is based on the combination of nonparametric k-nearest-neighbor (KNN) and kernel (KNN-kernel) density estimation. The KNN-kernel density estimation technique makes it possible to model clusters of different densities in high-dimensional data sets. Moreover, the number of clusters is identified automatically by the algorithm. KNNCLUST is tested using simulated data and applied to a multispectral compact airborne spectrographic imager (CASI)_image of a floodplain in the Netherlands to illustrate the characteristics of the method.     

Quantum annealing for combinatorial clustering

Clustering is a powerful machine learning technique that groups “similar” data points based on their characteristics. Many clustering algorithms work by approximating the minimization of an objective function, namely the sum of within-the-cluster distances between points. The straightforward approach involves examining all the possible assignments of points to each of the clusters. This approach guarantees the solution will be a global minimum; however, the number of possible assignments scales quickly with the number of data points and becomes computationally intractable even for very small datasets. In order to circumvent this issue, cost function minima are found using popular local search-based heuristic approaches such as k-means and hierarchical clustering. Due to their greedy nature, such techniques do not guarantee that a global minimum will be found and can lead to sub-optimal clustering assignments. Other classes of global search-based techniques, such as simulated annealing, tabu search, and genetic algorithms, may offer better quality results but can be too time-consuming to implement. In this work, we describe how quantum annealing can be used to carry out clustering. We map the clustering objective to a quadratic binary optimization problem and discuss two clustering algorithms which are then implemented on commercially available quantum annealing hardware, as well as on a purely classical solver “qbsolv.” The first algorithm assigns N data points to K clusters, and the second one can be used to perform binary clustering in a hierarchical manner. We present our results in the form of benchmarks against well-known k-means clustering and discuss the advantages and disadvantages of the proposed techniques.     

Adaptive fuzzy c-means clustering algorithm for interval data type based on interval-dividing technique

Clustering for symbolic data type is a necessary process in many scientific disciplines, and the fuzzy c-means clustering for interval data type (IFCM) is one of the most popular algorithms. This paper presents an adaptive fuzzy c-means clustering algorithm for interval-valued data based on interval-dividing technique. This method gives a fuzzy partition and a prototype for each fuzzy cluster by optimizing an objective function. And the adaptive distance between the pattern and its cluster center varies with each algorithm iteration and may be either different from one cluster to another or the same for all clusters. The novel part of this approach is that it takes into account every point in both intervals when computing the distance between the cluster and its representative. Experiments are conducted on synthetic data sets and a real data set. To compare the comprehensive performance of the proposed method with other four existing methods, the corrected rand index, the value of objective function and iterations are introduced as the evaluation criterion. Clustering results demonstrate that the algorithm proposed in this paper has remarkable advantages.     

An efficient hybrid data clustering method based on K-harmonic means and Particle Swarm Optimization

Clustering is the process of grouping data objects into set of disjoint classes called clusters so that objects within a class are highly similar with one another and dissimilar with the objects in other classes. K-means (KM) algorithm is one of the most popular clustering techniques because it is easy to implement and works fast in most situations. However, it is sensitive to initialization and is easily trapped in local optima. K-harmonic means (KHM) clustering solves the problem of initialization using a built-in boosting function, but it also easily runs into local optima. Particle Swarm Optimization (PSO) algorithm is a stochastic global optimization technique. A hybrid data clustering algorithm based on PSO and KHM (PSOKHM) is proposed in this research, which makes full use of the merits of both algorithms. The PSOKHM algorithm not only helps the KHM clustering escape from local optima but also overcomes the shortcoming of the slow convergence speed of the PSO algorithm. The performance of the PSOKHM algorithm is compared with those of the PSO and the KHM clustering on seven data sets. Experimental results indicate the superiority of the PSOKHM algorithm.     

A novel attribute weighting algorithm for clustering high-dimensional categorical data

Due to data sparseness and attribute redundancy in high-dimensional data, clusters of objects often exist in subspaces rather than in the entire space. To effectively address this issue, this paper presents a new optimization algorithm for clustering high-dimensional categorical data, which is an extension of the k-modes clustering algorithm. In the proposed algorithm, a novel weighting technique for categorical data is developed to calculate two weights for each attribute (or dimension) in each cluster and use the weight values to identify the subsets of important attributes that categorize different clusters. The convergence of the algorithm under an optimization framework is proved. The performance and scalability of the algorithm is evaluated experimentally on both synthetic and real data sets. The experimental studies show that the proposed algorithm is effective in clustering categorical data sets and also scalable to large data sets owning to its linear time complexity with respect to the number of data objects, attributes or clusters.     

Clustering categorical data sets using tabu search techniques

Clustering methods partition a set of objects into clusters such that objects in the same cluster are more similar to each other than objects in different clusters according to some defined criteria. The fuzzy k-means-type algorithm is best suited for implementing this clustering operation because of its effectiveness in clustering data sets. However, working only on numeric values limits its use because data sets often contain categorical values. In this paper, we present a tabu search based clustering algorithm, to extend the k-means paradigm to categorical domains, and domains with both numeric and categorical values. Using tabu search based techniques, our algorithm can explore the solution space beyond local optimality in order to aim at finding a global solution of the fuzzy clustering problem. It is found that the clustering results produced by the proposed algorithm are very high in accuracy.     

Semi-supervised fuzzy clustering: A kernel-based approach

Semi-supervised clustering algorithms aim to improve the clustering accuracy under the supervisions of a limited amount of labeled data. Since kernel-based approaches, such as kernel-based fuzzy c-means algorithm (KFCM), have been successfully used in classification and clustering problems, in this paper, we propose a novel semi-supervised clustering approach using the kernel-based method based on KFCM and denote it the semi-supervised kernel fuzzy c-mean algorithm (SSKFCM). The objective function of SSKFCM is defined by adding classification errors of both the labeled and the unlabeled data, and its global optimum has been obtained through repeatedly updating the fuzzy memberships and the optimized kernel parameter. The objective function may have more than one local optimum, so we employ a function transformation technique to reformulate the objective function after a local minimum has been obtained, and select the best optimum as the solution to the objective function. Experimental results on both the artificial and several real data sets show SSKFCM performs better than its conventional counterparts and it achieves the best accurate clustering results when the parameter is optimized.     

Fast multiscale clustering and manifold identification

We present a novel multiscale clustering algorithm inspired by algebraic multigrid techniques. Our method begins with assembling data points according to local similarities. It uses an aggregation process to obtain reliable scale-dependent global properties, which arise from the local similarities. As the aggregation process proceeds, these global properties affect the formation of coherent clusters. The global features that can be utilized are for example density, shape, intrinsic dimensionality and orientation. The last three features are a part of the manifold identification process which is performed in parallel to the clustering process. The algorithm detects clusters that are distinguished by their multiscale nature, separates between clusters with different densities, and identifies and resolves intersections between clusters. The algorithm is tested on synthetic and real data sets, its running time complexity is linear in the size of the data set.     

A novel soft subspace clustering algorithm with noise detection for high dimensional datasets

When dealing with high dimensional data, clustering faces the curse of dimensionality problem. In such data sets, clusters of objects exist in subspaces rather than in whole feature space. Subspace clustering algorithms have already been introduced to tackle this problem. However, noisy data points present in this type of data can have great impact on the clustering results. Therefore, to overcome these problems simultaneously, the fuzzy soft subspace clustering with noise detection (FSSC-ND) is proposed. The presented algorithm is based on the entropy weighting soft subspace clustering and noise clustering. The FSSC-ND algorithm uses a new objective function and update rules to achieve the mentioned goals and present more interpretable clustering results. Several experiments have been conducted on artificial and UCI benchmark datasets to assess the performance of the proposed algorithm. In addition, a number of cancer gene expression datasets are used to evaluate the performance of the proposed algorithm when dealing with high dimensional data. The results of these experiments demonstrate the superiority of the FSSC-ND algorithm in comparison with the state of the art clustering algorithms developed in earlier research.     

Extending fuzzy and probabilistic clustering to very large data sets

Approximating clusters in very large (VL=unloadable) data sets has been considered from many angles. The proposed approach has three basic steps: (i) progressive sampling of the VL data, terminated when a sample passes a statistical goodness of fit test; (ii) clustering the sample with a literal (or exact) algorithm; and (iii) non-iterative extension of the literal clusters to the remainder of the data set. Extension accelerates clustering on all (loadable) data sets. More importantly, extension provides feasibility—a way to find (approximate) clusters—for data sets that are too large to be loaded into the primary memory of a single computer. A good generalized sampling and extension scheme should be effective for acceleration and feasibility using any extensible clustering algorithm. A general method for progressive sampling in VL sets of feature vectors is developed, and examples are given that show how to extend the literal fuzzy (c-means) and probabilistic (expectation-maximization) clustering algorithms onto VL data. The fuzzy extension is called the generalized extensible fast fuzzy c-means (geFFCM) algorithm and is illustrated using several experiments with mixtures of five-dimensional normal distributions.     

Determining the number of clusters using information entropy for mixed data

In cluster analysis, one of the most challenging and difficult problems is the determination of the number of clusters in a data set, which is a basic input parameter for most clustering algorithms. To solve this problem, many algorithms have been proposed for either numerical or categorical data sets. However, these algorithms are not very effective for a mixed data set containing both numerical attributes and categorical attributes. To overcome this deficiency, a generalized mechanism is presented in this paper by integrating Rényi entropy and complement entropy together. The mechanism is able to uniformly characterize within-cluster entropy and between-cluster entropy and to identify the worst cluster in a mixed data set. In order to evaluate the clustering results for mixed data, an effective cluster validity index is also defined in this paper. Furthermore, by introducing a new dissimilarity measure into the k-prototypes algorithm, we develop an algorithm to determine the number of clusters in a mixed data set. The performance of the algorithm has been studied on several synthetic and real world data sets. The comparisons with other clustering algorithms show that the proposed algorithm is more effective in detecting the optimal number of clusters and generates better clustering results.