Weighted association based methods for the combination of heterogeneous partitions

Co-association matrix has been a useful tool in many clustering ensemble techniques as a similarity measure between objects. In this paper, we introduce the weighted-association matrix, which is more expressive than the traditional co-association as a similarity measure, in the sense that it integrates information from the set of partitions in the clustering ensemble as well as from the original data of object representations. The weighted-association matrix is the core of the two main contributions of this paper: a natural extension of the well-known evidence accumulation cluster ensemble method by using the weighted-association matrix and a kernel based clustering ensemble method that uses a new data representation. These methods are compared with simple clustering algorithms as well as with other clustering ensemble algorithms on several datasets. The obtained results ratify the accuracy of the proposed algorithms.     

Cumulative voting consensus method for partitions with variable number of clusters

Over the past few years, there has been a renewed interest in the consensus clustering problem. Several new methods have been proposed for finding a consensus partition for a set of n data objects that optimally summarizes an ensemble. In this paper, we propose new consensus clustering algorithms with linear computational complexity in n. We consider clusterings generated with random number of clusters, which we describe by categorical random variables. We introduce the idea of cumulative voting as a solution for the problem of cluster label alignment, where, unlike the common one-to-one voting scheme, a probabilistic mapping is computed. We seek a first summary of the ensemble that minimizes the average squared distance between the mapped partitions and the optimal representation of the ensemble, where the selection criterion of the reference clustering is defined based on maximizing the information content as measured by the entropy. We describe cumulative vote weighting schemes and corresponding algorithms to compute an empirical probability distribution summarizing the ensemble. Given the arbitrary number of clusters of the input partitions, we formulate the problem of extracting the optimal consensus as that of finding a compressed summary of the estimated distribution that preserves maximum relevant information. An efficient solution is obtained using an agglomerative algorithm that minimizes the average generalized Jensen-Shannon divergence within the cluster. The empirical study demonstrates significant gains in accuracy and superior performance compared to several recent consensus clustering algorithms.     

Exploring the diversity in cluster ensemble generation: Random sampling and random projection

Cluster ensemble first generates a large library of different clustering solutions and then combines them into a more accurate consensus clustering. It is commonly accepted that for cluster ensemble to work well the member partitions should be different from each other, and meanwhile the quality of each partition should remain at an acceptable level. Many different strategies have been used to generate different base partitions for cluster ensemble. Similar to ensemble classification, many studies have been focusing on generating different partitions of the original dataset, i.e., clustering on different subsets (e.g., obtained using random sampling) or clustering in different feature spaces (e.g., obtained using random projection). However, little attention has been paid to the diversity and quality of the partitions generated using these two approaches. In this paper, we propose a novel cluster generation method based on random sampling, which uses the nearest neighbor method to fill the category information of the missing samples (abbreviated as RS-NN). We evaluate its performance in comparison with k-means ensemble, a typical random projection method (Random Feature Subset, abbreviated as FS), and another random sampling method (Random Sampling based on Nearest Centroid, abbreviated as RS-NC). Experimental results indicate that the FS method always generates more diverse partitions while RS-NC method generates high-quality partitions. Our proposed method, RS-NN, generates base partitions with a good balance between the quality and the diversity and achieves significant improvement over alternative methods. Furthermore, to introduce more diversity, we propose a dual random sampling method which combines RS-NN and FS methods. The proposed method can achieve higher diversity with good quality on most datasets.     

Spectral clustering with fuzzy similarity measure

Spectral clustering algorithms have been successfully used in the field of pattern recognition and computer vision. The widely used similarity measure for spectral clustering is Gaussian kernel function which measures the similarity between data points. However, it is difficult for spectral clustering to choose the suitable scaling parameter in Gaussian kernel similarity measure. In this paper, utilizing the prototypes and partition matrix obtained by fuzzy c-means clustering algorithm, we develop a fuzzy similarity measure for spectral clustering (FSSC). Furthermore, we introduce the K-nearest neighbor sparse strategy into FSSC and apply the sparse FSSC to texture image segmentation. In our experiments, we firstly perform some experiments on artificial data to verify the efficiency of the proposed fuzzy similarity measure. Then we analyze the parameters sensitivity of our method. Finally, we take self-tuning spectral clustering and Nyström methods for baseline comparisons, and apply these three methods to the synthetic texture and remote sensing image segmentation. The experimental results show that the proposed method is significantly effective and stable.     

一种深度自监督聚类集成算法

针对聚类集成中一致性函数设计问题,本文提出一种深度自监督聚类集成算法。该算法首先根据基聚类划分结果采用加权连通三元组算法计算样本之间的相似度矩阵,基于相似度矩阵表达邻接关系,将基聚类由特征空间中的数据表示变换至图数据表示;在此基础上,基聚类的一致性集成问题被转化为对基聚类图数据表示的图聚类问题。为此,本文利用图神经网络构造自监督聚类集成模型,一方面采用图自动编码器学习图的低维嵌入,依据低维嵌入似然分布估计聚类集成的目标分布;另一方面利用聚类集成目标对低维嵌入过程进行指导,确保模型获得的图低维嵌入与聚类集成结果是一致最优的。在大量数据集上进行了仿真实验,结果表明本文算法相比HGPA、CSPA和MCLA等算法可以进一步提高聚类集成结果的准确性。     

Effects of resampling method and adaptation on clustering ensemble efficacy

Clustering ensembles combine multiple partitions of data into a single clustering solution of better quality. Inspired by the success of supervised bagging and boosting algorithms, we propose non-adaptive and adaptive resampling schemes for the integration of multiple independent and dependent clusterings. We investigate the effectiveness of bagging techniques, comparing the efficacy of sampling with and without replacement, in conjunction with several consensus algorithms. In our adaptive approach, individual partitions in the ensemble are sequentially generated by clustering specially selected subsamples of the given dataset. The sampling probability for each data point dynamically depends on the consistency of its previous assignments in the ensemble. New subsamples are then drawn to increasingly focus on the problematic regions of the input feature space. A measure of data point clustering consistency is therefore defined to guide this adaptation. Experimental results show improved stability and accuracy for clustering structures obtained via bootstrapping, subsampling, and adaptive techniques. A meaningful consensus partition for an entire set of data points emerges from multiple clusterings of bootstraps and subsamples. Subsamples of small size can reduce computational cost and measurement complexity for many unsupervised data mining tasks with distributed sources of data. This empirical study also compares the performance of adaptive and non-adaptive clustering ensembles using different consensus functions on a number of datasets. By focusing attention on the data points with the least consistent clustering assignments, whether one can better approximate the inter-cluster boundaries or can at least create diversity in boundaries and this results in improving clustering accuracy and convergence speed as a function of the number of partitions in the ensemble. The comparison of adaptive and non-adaptive approaches is a new avenue for research, and this study helps to pave the way for the useful application of distributed data mining methods.     

Particle Swarm Clustering in clustering ensembles: Exploiting pruning and alignment free consensus

A clustering ensemble combines in a consensus function the partitions generated by a set of independent base clusterers. In this study both the employment of particle swarm clustering (PSC) and ensemble pruning (i.e., selective reduction of base partitions) using evolutionary techniques in the design of the consensus function is investigated. In the proposed ensemble, PSC plays two roles. First, it is used as a base clusterer. Second, it is employed in the consensus function; arguably the most challenging element of the ensemble. The proposed consensus function exploits a representation for the base partitions that makes cluster alignment unnecessary, allows for the combination of partitions with different number of clusters, and supports both disjoint and overlapping (fuzzy, probabilistic, and possibilistic) partitions. Results on both synthetic and real-world data sets show that the proposed ensemble can produce statistically significant better partitions, in terms of the validity indices used, than the best base partition available in the ensemble. In general, a small number of selected base partitions (below 20% of the total) yields the best results. Moreover, results produced by the proposed ensemble compare favorably to those of state-of-the-art clustering algorithms, and specially to swarm based clustering ensemble algorithms.     

On voting-based consensus of cluster ensembles

Voting-based consensus clustering refers to a distinct class of consensus methods in which the cluster label mismatch problem is explicitly addressed. The voting problem is defined as the problem of finding the optimal relabeling of a given partition with respect to a reference partition. It is commonly formulated as a weighted bipartite matching problem. In this paper, we present a more general formulation of the voting problem as a regression problem with multiple-response and multiple-input variables. We show that a recently introduced cumulative voting scheme is a special case corresponding to a linear regression method. We use a randomized ensemble generation technique, where an overproduced number of clusters is randomly selected for each ensemble partition. We apply an information theoretic algorithm for extracting the consensus clustering from the aggregated ensemble representation and for estimating the number of clusters. We apply it in conjunction with bipartite matching and cumulative voting. We present empirical evidence showing substantial improvements in clustering accuracy, stability, and estimation of the true number of clusters based on cumulative voting. The improvements are achieved in comparison to consensus algorithms based on bipartite matching, which perform very poorly with the chosen ensemble generation technique, and also to other recent consensus algorithms.     

Gaussian kernel width exploration and cone cluster labeling for support vector clustering

The process of clustering groups together data points so that intra-cluster similarity is maximized while inter-cluster similarity is minimized. Support vector clustering (SVC) is a clustering approach that can identify arbitrarily shaped cluster boundaries. The execution time of SVC depends heavily on several factors: choice of the width of a kernel function that determines a nonlinear transformation of the input data, solution of a quadratic program, and the way that the output of the quadratic program is used to produce clusters. This paper builds on our prior SVC research in two ways. First, we propose a method for identifying a kernel width value in a region where our experiments suggest that clustering structure is changing significantly. This can form the starting point for efficient exploration of the space of kernel width values. Second, we offer a technique, called cone cluster labeling, that uses the output of the quadratic program to build clusters in a novel way that avoids an important deficiency present in previous methods. Our experimental results use both two-dimensional and high-dimensional data sets.     

A clustering algorithm for multiple data streams based on spectral component similarity

We propose a new algorithm to cluster multiple and parallel data streams using spectral component similarity analysis, a new similarity metric. This new algorithm can effectively cluster data streams that show similar behaviour to each other but with unknown time delays. The algorithm performs auto-regressive modelling to measure the lag correlation between the data streams and uses it as the distance metric for clustering. The algorithm uses a sliding window model to continuously report the most recent clustering results and to dynamically adjust the number of clusters. Our experimental results on real and synthetic datasets show that our algorithm has better clustering quality, efficiency, and stability than other existing methods.     

Text document clustering based on neighbors

Clustering is a very powerful data mining technique for topic discovery from text documents. The partitional clustering algorithms, such as the family of k-means, are reported performing well on document clustering. They treat the clustering problem as an optimization process of grouping documents into k clusters so that a particular criterion function is minimized or maximized. Usually, the cosine function is used to measure the similarity between two documents in the criterion function, but it may not work well when the clusters are not well separated. To solve this problem, we applied the concepts of neighbors and link, introduced in [S. Guha, R. Rastogi, K. Shim, ROCK: a robust clustering algorithm for categorical attributes, Information Systems 25 (5) (2000) 345–366], to document clustering. If two documents are similar enough, they are considered as neighbors of each other. And the link between two documents represents the number of their common neighbors. Instead of just considering the pairwise similarity, the neighbors and link involve the global information into the measurement of the closeness of two documents. In this paper, we propose to use the neighbors and link for the family of k-means algorithms in three aspects: a new method to select initial cluster centroids based on the ranks of candidate documents; a new similarity measure which uses a combination of the cosine and link functions; and a new heuristic function for selecting a cluster to split based on the neighbors of the cluster centroids. Our experimental results on real-life data sets demonstrated that our proposed methods can significantly improve the performance of document clustering in terms of accuracy without increasing the execution time much.     

Clustering ensembles: models of consensus and weak partitions

Clustering ensembles have emerged as a powerful method for improving both the robustness as well as the stability of unsupervised classification solutions. However, finding a consensus clustering from multiple partitions is a difficult problem that can be approached from graph-based, combinatorial, or statistical perspectives. This study extends previous research on clustering ensembles in several respects. First, we introduce a unified representation for multiple clusterings and formulate the corresponding categorical clustering problem. Second, we propose a probabilistic model of consensus using a finite mixture of multinomial distributions in a space of clusterings. A combined partition is found as a solution to the corresponding maximum-likelihood problem using the EM algorithm. Third, we define a new consensus function that is related to the classical intraclass variance criterion using the generalized mutual information definition. Finally, we demonstrate the efficacy of combining partitions generated by weak clustering algorithms that use data projections and random data splits. A simple explanatory model is offered for the behavior of combinations of such weak clustering components. Combination accuracy is analyzed as a function of several parameters that control the power and resolution of component partitions as well as the number of partitions. We also analyze clustering ensembles with incomplete information and the effect of missing cluster labels on the quality of overall consensus. Experimental results demonstrate the effectiveness of the proposed methods on several real-world data sets.     

基于互信息选择聚类集成的网络流量分类方法

针对互联网流量标注困难以及单个聚类器的泛化能力较弱,提出一种基于互信息(MI)理论的选择聚类集成方法,以提高流量分类的精度。首先计算不同初始簇个数K的K均值聚类结果与训练集中流量协议的真实分布之间的规范化互信息(NMI);然后基于NMI的值来选择用于聚类集成的K均值基聚类器的K值序列;最后采用二次互信息(QMI)的一致函数生成一致聚类结果,并使用一种半监督方法对聚类簇进行标注。通过实验比较了聚类集成方法与单个聚类算法在4个不同测试集上总体分类精度。实验结果表明,聚类集成方法的流量分类总体精度能达到90%。所提方法将聚类集成模型应用到网络流量分类中,提高了流量分类的精度和在不同数据集上的分类稳定性。     

Generalized Adjusted Rand Indices for cluster ensembles

In this paper, Adjusted Rand Index (ARI) is generalized to two new measures based on matrix comparison: (i) Adjusted Rand Index between a similarity matrix and a cluster partition (ARImp), to evaluate the consistency of a set of clustering solutions with their corresponding consensus matrix in a cluster ensemble, and (ii) Adjusted Rand Index between similarity matrices (ARImm), to evaluate the consistency between two similarity matrices. Desirable properties of ARI are preserved in the two new measures, and new properties are discussed. These properties include: (i) detection of uncorrelatedness; (ii) computation of ARImp/ARImm in a distributed environment; and (iii) characterization of the degree of uncertainty of a consensus matrix. All of these properties are investigated from both the perspectives of theoretical analysis and experimental validation. We have also performed a number of experiments to show the usefulness and effectiveness of the two proposed measures in practical applications.     

Semi-supervised clustering with metric learning: An adaptive kernel method

Most existing representative works in semi-supervised clustering do not sufficiently solve the violation problem of pairwise constraints. On the other hand, traditional kernel methods for semi-supervised clustering not only face the problem of manually tuning the kernel parameters due to the fact that no sufficient supervision is provided, but also lack a measure that achieves better effectiveness of clustering. In this paper, we propose an adaptive Semi-supervised Clustering Kernel Method based on Metric learning (SCKMM) to mitigate the above problems. Specifically, we first construct an objective function from pairwise constraints to automatically estimate the parameter of the Gaussian kernel. Then, we use pairwise constraint-based K-means approach to solve the violation issue of constraints and to cluster the data. Furthermore, we introduce metric learning into nonlinear semi-supervised clustering to improve separability of the data for clustering. Finally, we perform clustering and metric learning simultaneously. Experimental results on a number of real-world data sets validate the effectiveness of the proposed method.     

A fragment-based iterative consensus clustering algorithm with a robust similarity

The consensus clustering technique combines multiple clustering results without accessing the original data. Consensus clustering can be used to improve the robustness of clustering results or to obtain the clustering results from multiple data sources. In this paper, we propose a novel definition of the similarity between points and clusters. With an iterative process, such a definition of similarity can represent how a point should join or leave a cluster clearly, determine the number of clusters automatically, and combine partially overlapping clustering results. We also incorporate the concept of “clustering fragment” into our method for increased speed. The experimental results show that our algorithm achieves good performances on both artificial data and real data.     

From sample similarity to ensemble similarity: probabilistic distance measures in reproducing kernel Hilbert space

This paper addresses the problem of characterizing ensemble similarity from sample similarity in a principled manner. Using a reproducing kernel as a characterization of sample similarity, we suggest a probabilistic distance measure in the reproducing kernel Hilbert space (RKHS) as the ensemble similarity. Assuming normality in the RKHS, we derive analytic expressions for probabilistic distance measures that are commonly used in many applications, such as Chernoff distance (or the Bhattacharyya distance as its special case), Kullback-Leibler divergence, etc. Since the reproducing kernel implicitly embeds a nonlinear mapping, our approach presents a new way to study these distances whose feasibility and efficiency is demonstrated using experiments with synthetic and real examples. Further, we extend the ensemble similarity to the reproducing kernel for ensemble and study the ensemble similarity for more general data representations.     

类属型数据核子空间聚类算法

现有的类属型数据子空间聚类方法大多基于特征间相互独立假设,未考虑属性间存在的线性或非线性相关性.提出一种类属型数据核子空间聚类方法.首先引入原作用于连续型数据的核函数将类属型数据投影到核空间,定义了核空间中特征加权的类属型数据相似性度量.其次,基于该度量推导了类属型数据核子空间聚类目标函数,并提出一种高效求解该目标函数的优化方法.最后,定义了一种类属型数据核子空间聚类算法.该算法不仅在非线性空间中考虑了属性间的关系,而且在聚类过程中赋予每个属性衡量其与簇类相关程度的特征权重,实现了类属型属性的嵌入式特征选择.还定义了一个聚类有效性指标,以评价类属型数据聚类结果的质量.在合成数据和实际数据集上的实验结果表明,与现有子空间聚类算法相比,核子空间聚类算法可以发掘类属型属性间的非线性关系,并有效提高了聚类结果的质量.     

Projective clustering ensembles

A considerable amount of work has been done in data clustering research during the last four decades, and a myriad of methods has been proposed focusing on different data types, proximity functions, cluster representation models, and cluster presentation. However, clustering remains a challenging problem due to its ill-posed nature: it is well known that off-the-shelf clustering methods may discover different patterns in a given set of data, mainly because every clustering algorithm has its own bias resulting from the optimization of different criteria. This bias becomes even more important as in almost all real-world applications, data is inherently high-dimensional and multiple clustering solutions might be available for the same data collection. In this respect, the problems of projective clustering and clustering ensembles have been recently defined to deal with the high dimensionality and multiple clusterings issues, respectively. Nevertheless, despite such two issues can often be encountered together, existing approaches to the two problems have been developed independently of each other. In our earlier work Gullo et al. (Proceedings of the international conference on data mining (ICDM), 2009a) we introduced a novel clustering problem, called projective clustering ensembles (PCE): given a set (ensemble) of projective clustering solutions, the goal is to derive a projective consensus clustering, i.e., a projective clustering that complies with the information on object-to-cluster and the feature-to-cluster assignments given in the ensemble. In this paper, we enhance our previous study and provide theoretical and experimental insights into the PCE problem. PCE is formalized as an optimization problem and is designed to satisfy desirable requirements on independence from the specific clustering ensemble algorithm, ability to handle hard as well as soft data clustering, and different feature weightings. Two PCE formulations are defined: a two-objective optimization problem, in which the two objective functions respectively account for the object- and feature-based representations of the solutions in the ensemble, and a single-objective optimization problem, in which the object- and feature-based representations are embedded into a single function to measure the distance error between the projective consensus clustering and the projective ensemble. The significance of the proposed methods for solving the PCE problem has been shown through an extensive experimental evaluation based on several datasets and comparatively with projective clustering and clustering ensemble baselines.     

基于模糊测度和证据理论的模糊聚类集成方法

针对现有集成方法在处理模糊聚类时存在的不足,提出一种基于证据理论的模糊聚类集成方法.以各聚类成员作为证据元,以样本点间的类别关系作为焦元,通过证据积累构造互相关矩阵.考虑到模糊聚类对于各样本点的聚类有效性,提出一种结合点模糊度和模糊贴近度的类别关系表示方法,并以此作为各证据元的基本概率赋值函数.最后基于互相关矩阵构造样本点间相似性关系,并利用谱聚类算法对其聚类. 实验中通过与多种已有聚类集成方法的对比表明,该方法具有较高的聚类性能.