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1.
X‐ray crystallography and solution NMR of detergent‐reconstituted OmpA (outer membrane protein A from E. coli) had shown that this protein forms an eight‐stranded transmembrane β‐barrel, but only limited information was obtained for the extracellular loops. In NMR studies of OmpA in two different detergent micelles, “NMR‐invisible” amino acid residues in‐between the extracellular loops and the β‐barrel prevented complete structural characterization. Here, we show that this NMR‐invisible ring around the β‐barrel of OmpA is also present in lipid bilayer nanodiscs and in mixed micelles with a third detergent, thus suggesting that the implicated rate processes have a functional role rather than representing an artifact of the protein reconstitution. In addition to sequence‐specific NMR assignments for OmpA in the nanodiscs, the present results are based on a protocol of micro‐coil TROSY‐ and CRINEPT‐type NMR diffusion measurements for studying the hydrodynamic properties and the foldedness of [2H,15N]‐labeled membrane proteins in nanodiscs. This protocol can be applied under conditions closely similar to those used for NMR structure determinations or crystallization trials.  相似文献   

2.
Saturation transfer difference (STD) NMR spectroscopy is one of the most popular ligand‐based NMR techniques for the study of protein–ligand interactions. This is due to its robustness and the fact that it is focused on the signals of the ligand, without any need for NMR information on the macromolecular target. This technique is most commonly applied to systems involving different types of ligands (e.g., small organic molecules, carbohydrates or lipids) and a protein as the target, in which the latter is selectively saturated. However, only a few examples have been reported where membrane mimetics are the macromolecular binding partners. Here, we have employed STD NMR spectroscopy to investigate the interactions of the neurotransmitter dopamine with mimetics of lipid bilayers, such as nanodiscs, by saturation of the latter. In particular, the interactions between dopamine and model lipid nanodiscs formed either from charged or zwitterionic lipids have been resolved at the atomic level. The results, in agreement with previous isothermal titration calorimetry studies, show that dopamine preferentially binds to negatively charged model membranes, but also provide detailed atomic insights into the mode of interaction of dopamine with membrane mimetics. Our findings provide relevant structural information for the design of lipid‐based drug carriers of dopamine and its structural analogues and are of general applicability to other systems.  相似文献   

3.
Membrane proteins encapsulated by detergent micelles are widely used for structural study. Because of their amphipathic property, detergents have the ability to maintain protein solubility and stability in an aqueous medium. However, conventional detergents have serious limitations in their scope and utility, particularly for eukaryotic membrane proteins and membrane protein complexes. Thus, a number of new agents have been devised; some have made significant contributions to membrane protein structural studies. However, few detergent design principles are available. In this study, we prepared meta and ortho isomers of the previously reported para‐substituted xylene‐linked maltoside amphiphiles (XMAs), along with alkyl chain‐length variation. The isomeric XMAs were assessed with three membrane proteins, and the meta isomer with a C12 alkyl chain was most effective at maintaining solubility/stability of the membrane proteins. We propose that interplay between the hydrophile–lipophile balance (HLB) and alkyl chain length is of central importance for high detergent efficacy. In addition, differences in inter‐alkyl‐chain distance between the isomers influence the ability of the detergents to stabilise membrane proteins.  相似文献   

4.
BACKGROUND: Microalgae continue to be a focus of industrial bioprocess sustainability practice owing to the numerous biofuels and bioproducts that can be obtained with simultaneous environmental bioremediation applications. However, the extremely dilute nature of large volume microalgal cultures and the small particle size of single‐cell microalgae present technological and economic problems of effective dewatering, thus affecting the application of microalgae in process industries. Microalgae immobilization using biocompatible polymeric systems has proved to be an effective strategy to circumvent the heavy dewatering requirement, as this approach provides physical separation between the solid microalgal cells and the liquid medium. RESULTS: In this work, a novel microalgae immobilization carrier, sodium cellulose sulphate/poly‐dimethyl‐diallyl‐ammonium chloride (NaCS‐PDMDAAC) capsule, was synthesized and the resulting polymeric capsules were characterized using physicochemical techniques such as Fourier transform infrared spectroscopy (FT‐IR), scanning electron microscopy equipped with energy dispersive X‐ray spectroscopy (SEM‐EDX) and nuclear magnetic resonance spectroscopy (NMR). Experimental results showed that the unique properties of NaCS‐PDMDAAC capsules, such as pore size, capsule size, mechanical strength, and structural and compositional homogeneity, relevant to microalgae cultivation with batch or continuous nutrient removal can be accurately controlled. CONCLUSION: These polymeric capsules find applications not only with microalgae cultivation but also for other microorganisms. © 2012 Society of Chemical Industry  相似文献   

5.
BACKGROUND: The aim of the work presented was to synthesize a series of amphiphilic hyperbranched poly[(amine‐ester)‐co‐(D ,L ‐lactide)] (HPAE‐co‐PLA) copolymers and study the formation of copolymeric micelles. These copolymeric micelle systems are expected to be potential candidates for applications in protein drug delivery. RESULTS: The chemical structures of the copolymers were confirmed by Fourier transform infrared spectroscopy, 13C NMR and thermogravimetric analysis. Fluorescence spectroscopy and dynamic light scattering confirmed the formation of copolymeric micelles of the HPAE‐co‐PLA copolymers. The maintenance of stability of bovine serum albumin (BSA) during release from micelles in vitro was also measured using circular dichroism and fluorescence spectrometry. CONCLUSION: Novel hyperbranched HPAE‐co‐PLA copolymers have been synthesized. Conjugation of PLA to HPAE was proved to be an available method for the preparation of micelles for protein delivery. The BSA‐loaded micelles showed enhanced encapsulation efficiency and the structural stability of BSA was retained during the release process. The hyperbranched polymeric micelles could be useful as drug carriers for protein drug delivery systems. Copyright © 2008 Society of Chemical Industry  相似文献   

6.
G‐quadruplexes and i‐motifs are tetraplex structures present in telomeres and the promoter regions of oncogenes. The possibility of producing nanodevices with pH‐sensitive functions has triggered interest in modified oligonucleotides with improved structural properties. We synthesized C‐rich oligonucleotides carrying conformationally restricted (2′S)‐2′‐deoxy‐2′‐C‐methyl‐cytidine units. The effect of this modified nucleoside on the stability of intramolecular i‐motifs from the vertebrate telomere was investigated by UV, CD, and NMR spectroscopy. The replacement of selected positions of the C‐core with C‐modified residues induced the formation of stable intercalated tetraplexes at near‐neutral pH. This study demonstrates the possibility of enhancing the stability of the i‐motif by chemical modification.  相似文献   

7.
The sequence‐specific resonance assignment of a protein forms the basis for studies of molecular structure and dynamics, as well as to functional assay studies by NMR spectroscopy. Here we present a protocol for the sequential 13C and 15N resonance assignment of uniformly [15N,13C]‐labeled proteins, based on a suite of complementary three‐dimensional solid‐state NMR spectroscopy experiments. It is directed towards the application to proteins with more than about 100 amino acid residues. The assignments rely on a walk along the backbone by using a combination of three experiments that correlate nitrogen and carbon spins, including the well‐dispersed Cβ resonances. Supplementary spectra that correlate further side‐chain resonances can be important for identifying the amino acid type, and greatly assist the assignment process. We demonstrate the application of this assignment protocol for a crystalline preparation of the N‐terminal globular domain of the HET‐s prion, a 227‐residue protein.  相似文献   

8.
The possibility of measuring the action of inhibitors of specific enzymatic reactions in intact cells, cell lysates or membrane preparations represents a major advance in the lead discovery process. Despite the relevance of assaying in physiological conditions, only a small number of biophysical techniques, often requiring complex set‐up, are applicable to these sample types. Here, we demonstrate the first application of n‐fluorine atoms for biochemical screening (n‐FABS), a homogeneous and versatile assay based on 19F NMR spectroscopy, to the detection of high‐ and low‐affinity inhibitors of a membrane enzyme in cell extracts and determination of their IC50 values. Our approach can allow the discovery of novel binding fragments against targets known to be difficult to purify or where membrane‐association is required for activity. These results pave the way for future applications of the methodology to these relevant and complex biological systems.  相似文献   

9.
A series of poly(2‐alkyloyloxyethylacrylate) and poly(2‐alkyloyloxyethylacrylate‐co‐methylacrylate) polymers as novel polymeric phase‐change materials (PCMs) were synthesized starting from 2‐hydroxyethylacrylate and fatty acids. The chemical structure and crystalline morphology of the synthesized copolymers were characterized with Fourier transform infrared and 1H‐NMR spectroscopy and polarized optical microscopy, respectively, and their thermal energy storage properties and thermal stability were investigated with differential scanning calorimetry and thermogravimetric analysis, respectively. The thermal conductivities of the PCMs were also measured with a thermal property analyzer. Moreover, thermal cycling testing showed that the copolymers had good thermal reliability and chemical stability after they were subjected to 1000 heating/cooling cycles. The synthesized poly(2‐alkyloyloxyethylacrylate) polymers and poly(2‐alkyloyloxyethylacrylate‐co‐methylacrylate) copolymers as novel PCMs have considerable potential for thermal energy storage and temperature‐control applications. © 2012 Wiley Periodicals, Inc. J Appl Polym Sci, 2012  相似文献   

10.
A series of sulfonated poly(phosphazene)‐graft‐poly(styrene‐co‐N‐benzylmaleimide) (PP‐g‐PSN) copolymers were prepared via atom transfer radical polymerization (ATRP), followed by regioselective sulfonation which occurred preferentially at the poly(styrene‐co‐N‐benzylmaleimide) sites. The structures of these copolymers were confirmed by Fourier transform infrared (FTIR) spectroscopy, 1H‐NMR, and 31P‐NMR, respectively. The resulting sulfonated PP‐g‐PSN membranes showed high water uptakes (WUs), low water swelling ratios (SWs), low methanol permeability coefficients, and proper proton conductivities. In comparison with non‐grafting sulfonated poly(bis(phenoxy)phosphazene) (SPBPP) membrane previously reported, the present membranes displayed higher proton conductivity, significantly improved the thermal and oxidative stabilities. Transmission electron microscopy (TEM) observation showed clear phase‐separated structures resulting from the difference in polarity between the hydrophobic polyphosphazene backbone and hydrophilic sulfonated poly(styrene‐co‐N‐benzylmaleimide) side chains, indicating effective ionic pathway in these membranes. The results showed that these materials were promising candidate materials for proton exchange membrane (PEM) in direct methanol fuel cell (DMFC) applications. © 2015 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2015 , 132, 42251.  相似文献   

11.
We report a new method for the preparation of asymmetric diamines using 4,4′‐oxydianiline (4,4′‐ODA) as the starting material. By controlling the equivalents of bromination agent, N‐bromosuccinimide, we were able to attach bromide and phenyl substituents at the 2‐ or 2,2′,6‐positions of 4,4′‐ODA. Thus, four new asymmetric aromatic diamines, 2‐bromo‐4,4′‐oxydianiline (6), 2,2′,6‐tribromo‐4,4′‐oxydianiline (7), 2‐phenyl‐4,4′‐oxydianiline (8) and 2,2′,6‐triphenyl‐4,4′‐oxydianiline (9), were synthesized by this method. Their structural asymmetry was confirmed using 1H NMR spectroscopy. Asymmetric polyimides (PI10–PI13) were prepared from these diamines and three different dianhydrides (pyromellitic dianhydride (PMDA), 3,3′,4,4′‐biphenyltetracarboxylic dianhydride and 2,2‐bis(3,4‐dicarboxyphenyl)hexafluoropropane dianhydride) in refluxing m‐cresol. The formed polyimides, except PI10a derived from 6 and PMDA, were all soluble in m‐cresol without premature precipitation during polymerization. These polyimides with inherent viscosity of 0.41–0.96 dL g?1, measured at a concentration of 0.5 g dL?1 in N‐methyl‐2‐pyrrolidone at 30 °C, can form tough and flexible films. Because of the structural asymmetry, they also exhibited enhanced solubility in organic solvents. Especially, polyimides PI11a and PI13a derived from 7 and 9 with rigid PMDA were soluble in various organic solvents at room temperature. The structural asymmetry of the prepared polyimides was also evidenced from 1H NMR spectroscopy. In the 1H NMR spectrum of PI11a, the protons of pyromellitic moiety appeared in an area ratio of 1:2:1 at three different chemical shifts, which were assigned to head‐to‐head, head‐to‐tail and tail‐to‐tail configurations, respectively. These polyimides also exhibited good thermal stability. Their glass transition temperatures ranged from 297 to 344 °C measured using thermal mechanical analysis. © 2013 Society of Chemical Industry  相似文献   

12.
The synthetic procedure and the characterization of the new amino derivatives of poly(oxa‐p‐phenylene‐3,3‐phtalido‐p‐phenylene‐oxa‐p‐phenilene‐oxy‐phenylene) (PEEK‐WC) with various average degrees of substitution, is reported. The amino PEEK‐WC was extensively characterised by using Fourier transform infrared (FTIR) spectroscopy, thermogravimetric analysis, differential scanning calorimeter, scanning electron microscopy, Elemental analyses, NMR, and viscosity measurements. The amino PEEK‐WC shows different solubility in some solvents in comparison with the parent polymer, good thermal stability and is able to form membrane by means of the phase inversion technique. Amino PEEK‐WC results to be quite reactive and can lead to further modification. © 2010 Wiley Periodicals, Inc. J Appl Polym Sci, 2010  相似文献   

13.
Voltage‐gated ion channels are large tetrameric multidomain membrane proteins that play crucial roles in various cellular transduction pathways. Because of their large size and domain‐related mobility, structural characterization has proved challenging. We analyzed high‐resolution solid‐state NMR data on different isotope‐labeled protein constructs of a bacterial cyclic nucleotide‐activated K+ channel (MlCNG) in lipid bilayers. We could identify the different subdomains of the 4×355 residue protein, such as the voltage‐sensing domain and the cyclic nucleotide binding domain. Comparison to ssNMR data obtained on isotope‐labeled cell membranes suggests a tight association of negatively charged lipids to the channel. We detected spectroscopic polymorphism that extends beyond the ligand binding site, and the corresponding protein segments have been associated with mutant channel types in eukaryotic systems. These findings illustrate the potential of ssNMR for structural investigations on large membrane‐embedded proteins, even in the presence of local disorder.  相似文献   

14.
The synthesis and detailed characterization of racemic 3‐methyl‐1,4‐dioxan‐2‐one (3‐MeDX) are reported. The bulk ring‐opening polymerization of 3‐MeDX, to yield a poly(ester‐ether) meant for biomedical applications, in the presence of various initiators such as tin(II) octanoate, tin(II) octanoate/n‐butyl alcohol, aluminium tris‐isopropoxide and an aluminium Schiff base complex (HAPENAlOiPr) under varying experimental conditions is here detailed for the first time. Polymerization kinetics were investigated and compared with those of 1,4‐dioxan‐2‐one. The studies reveal that the rate of polymerization of 3‐MeDX is less than that of 1,4‐dioxan‐2‐one. Experimental conditions to achieve relatively high molar masses have been established. Thermodynamic parameters such as enthalpy and entropy of 3‐MeDX polymerization as well as ceiling temperature have been determined. Poly(D ,L ‐3‐MeDX) is found to possess a much lower ceiling temperature than poly(1,4‐dioxan‐2‐one). Poly(D ,L ‐3‐MeDX) was characterized using NMR spectroscopy, matrix‐assisted laser desorption ionization mass spectrometry, size exclusion chromatography and differential scanning calorimetry. This polymer is an amorphous material with a glass transition temperature of about ?20 °C. Copyright © 2010 Society of Chemical Industry  相似文献   

15.
Aromatic poly(amide‐imide)s (PAIs) are high‐performance materials with a good compromise between thermal stability and processability when compared with polyamides or polyimides of analogous structures. In addition, the incorporation of photosensitive functional groups and chiral segments into the polymer backbone can lead to interesting polymers for various applications. In this work, six new photosensitive and chiral PAIs were synthesized from the direct polycondensation reaction of novel N,N′‐(bicyclo[2,2,2]oct‐7‐ene‐tetracarboxylic)‐bis‐L ‐amino acids with 2,5‐bis(4‐aminobenzylidene)cyclopentanone as dibenzalacetone moiety using two different methods. The polymerization reactions produced a series of photosensitive and optically active PAIs in high yields and with good inherent viscosities. The resulting polymers were characterized using Fourier transform infrared and 1H NMR spectroscopy, elemental analysis, inherent viscosity, specific rotation, solubility tests and UV‐visible spectroscopy. The thermal properties of the PAIs were investigated using thermogravimetric analysis. Due to the presence of the dibenzalacetone moiety in the polymer chain, the PAIs have photosensitive properties. Also, these PAIs are optically active and soluble in various organic solvents. These resulting new polymers have the potential to be used in column chromatography for the separation of enantiomeric mixtures. Copyright © 2009 Society of Chemical Industry  相似文献   

16.
Polymerization of 2,5‐diformylfuran with two primary amines was carried out in acetonitrile and ethanol at room temperature. The reaction was characterized using a combination of mass spectroscopy and NMR spectroscopy, which revealed the clean formation of the imine –CH?N? functional group. Although some cyclic products were detected from mass spectroscopy, the ring size was limited to products that have the ?CH?N? group only in anti‐geometry. The furan Schiff bases exhibit good thermal stability. While mass spectra evidenced oligomers of different lengths, cross‐polarization magic angle spinning 13C NMR spectra of the insoluble polymer revealed the linear structure as proposed. © 2013 Society of Chemical Industry  相似文献   

17.
The two homologous proteins ribonuclease A and onconase fold through conserved initial contacts but differ significantly in their thermodynamic stability. A disulfide bond is located in the folding initiation site of onconase (the C‐terminal part of the protein molecule) that is missing in ribonuclease A, whereas the other three disulfide bonds of onconase are conserved in ribonuclease A. Consequently, the deletion of this C‐terminal disulfide bond (C87–C104) allows the impact of the contacts in this region on the folding of onconase to be studied. We found the C87A/C104A‐onconase variant to be less active and less stable than the wild‐type protein, whereas the tertiary structure, which was determined by both X‐ray crystallography and NMR spectroscopy, was only marginally affected. The folding kinetics of the variant, however, were found to be changed considerably in comparison to wild‐type onconase. Proton exchange experiments in combination with two‐dimensional NMR spectroscopy revealed differences in the native‐state dynamics of the two proteins in the folding initiation site, which are held responsible for the changed folding mechanism. Likewise, the molecular dynamics simulation of the unfolding reaction indicated disparities for both proteins. Our results show that the high stability of onconase is based on the efficient stabilization of the folding initiation site by the C‐terminal disulfide bond. The formation of the on‐pathway intermediate, which is detectable during the folding of the wild‐type protein and promotes the fast and efficient refolding reaction, requires the presence of this covalent bond.  相似文献   

18.
Intrinsically disordered regions (IDRs) are preferred sites for post‐translational modifications essential for regulating protein function. The enhanced local mobility of IDRs facilitates their observation by NMR spectroscopy in vivo. Phosphorylation events can occur at multiple sites and respond dynamically to changes in kinase–phosphatase networks. Here we used real‐time NMR spectroscopy to study the effect of kinases and phosphatases present in Xenopus oocytes and egg extracts on the phosphorylation state of the “unique domain” of c‐Src. We followed the phosphorylation of S17 in oocytes, and of S17, S69, and S75 in egg extracts by NMR spectroscopy, MS, and western blotting. Addition of specific kinase inhibitors showed that S75 and S69 are phosphorylated by CDKs (cyclin‐dependent kinases) differently from Cdk1. Moreover, although PKA (cAMP‐dependent protein kinase) can phosphorylate S17 in vitro, this was not the major S17 kinase in egg extracts. Changes in PKA activity affected the phosphorylation levels of CDK‐dependent sites, thus suggesting indirect effects of kinase–phosphatase networks. This study provides a proof‐of‐concept of the use of real‐time in vivo NMR spectroscopy to characterize kinase/phosphatase effects on intrinsically disordered regulatory domains.  相似文献   

19.
Trp‐rich antimicrobial peptides play important roles in the host innate defense mechanism of many plants and animals. A series of short Trp‐rich peptides derived from the C‐terminal region of Bothrops asper myothoxin II, a Lys49 phospholipase A2 (PLA2), were found to reproduce the antimicrobial activities of their parent molecule. Of these peptides, KKWRWWLKALAKK—designated PEM‐2—was found to display improved activity against both Gram‐positive and Gram‐negative bacteria. To improve the antimicrobial activity of PEM‐2 for potential clinical applications further, we determined the solution structure of PEM‐2 bound to membrane‐mimetic dodecylphosphocholine (DPC) micelles by two‐dimensional NMR methods. The DPC micelle‐bound structure of PEM‐2 adopts an α‐helical conformation and the positively charged residues are clustered together to form a hydrophilic patch. The surface electrostatic potential map indicates that two of the three tryptophan residues are packed against the peptide backbone and form a hydrophobic face with Leu7, Ala9, and Leu10. A variety of biophysical and biochemical experiments, including circular dichroism, fluorescence spectroscopy, and microcalorimetry, were used to show that PEM‐2 interacted with negatively charged phospholipid vesicles and efficiently induced dye release from these vesicles, suggesting that the antimicrobial activity of PEM‐2 could be due to interactions with bacterial membranes. Potent analogues of PEM‐2 with enhanced antimicrobial and less pronounced hemolytic activities were designed with the aid of these structural studies.  相似文献   

20.
Di‐o‐butyrylchitosan was prepared by reacting chitosan with butyric acid anhydride in the presence of perchloric acid as a catalyst. 13C‐NMR and IR spectra of the modified chitosan suggested that both hydroxyl groups, at the C‐6 and C‐3 positions, in the chitosan molecules were substituted. The maximum degree of substitution was found to be less than 28%. The results of X‐ray diffractograms revealed that, in comparison with the unmodified chitosan membrane, the crystallinity of di‐o‐butyrylchitosan membranes was remarkably decreased. Meanwhile, it was also observed that the swelling indices of modified membranes were increased significantly in direct proportion to the degree of substitution. Thermogravimetric analysis indicated that the modified membranes exhibited a slightly increased thermal stability compared to the unmodified membrane. The ionic conductivity of di‐o‐butyrylchitosan membranes after hydration was investigated using impedance spectroscopy. Compared to the unmodified chitosan membrane, the hydrated di‐o‐butyrylchitosan membrane with a relatively high degree of the substitution showed an increased ionic conductivity of more than one order of magnitude. © 2004 Wiley Periodicals, Inc. J Appl Polym Sci 94: 2309–2323, 2004  相似文献   

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