Tissue-Specific Knockdown of Genes of the Argonaute Family Modulates Lifespan and Radioresistance in Drosophila melanogaster

Small RNAs are essential to coordinate many cellular processes, including the regulation of gene expression patterns, the prevention of genomic instability, and the suppression of the mutagenic transposon activity. These processes determine the aging, longevity, and sensitivity of cells and an organism to stress factors (particularly, ionizing radiation). The biogenesis and activity of small RNAs are provided by proteins of the Argonaute family. These proteins participate in the processing of small RNA precursors and the formation of an RNA-induced silencing complex. However, the role of Argonaute proteins in regulating lifespan and radioresistance remains poorly explored. We studied the effect of knockdown of Argonaute genes (AGO1, AGO2, AGO3, piwi) in various tissues on the Drosophila melanogaster lifespan and survival after the γ-irradiation at a dose of 700 Gy. In most cases, these parameters are reduced or did not change significantly in flies with tissue-specific RNA interference. Surprisingly, piwi knockdown in both the fat body and the nervous system causes a lifespan increase. But changes in radioresistance depend on the tissue in which the gene was knocked out. In addition, analysis of changes in retrotransposon levels and expression of stress response genes allow us to determine associated molecular mechanisms.     

ONT-Based Alternative Assemblies Impact on the Annotations of Unique versus Repetitive Features in the Genome of a Romanian Strain of Drosophila melanogaster

To date, different strategies of whole-genome sequencing (WGS) have been developed in order to understand the genome structure and functions. However, the analysis of genomic sequences obtained from natural populations is challenging and the biological interpretation of sequencing data remains the main issue. The MinION device developed by Oxford Nanopore Technologies (ONT) is able to generate long reads with minimal costs and time requirements. These valuable assets qualify it as a suitable method for performing WGS, especially in small laboratories. The long reads resulted using this sequencing approach can cover large structural variants and repetitive sequences commonly present in the genomes of eukaryotes. Using MinION, we performed two WGS assessments of a Romanian local strain of Drosophila melanogaster, referred to as Horezu_LaPeri (Horezu). In total, 1,317,857 reads with a size of 8.9 gigabytes (Gb) were generated. Canu and Flye de novo assembly tools were employed to obtain four distinct assemblies with both unfiltered and filtered reads, achieving maximum reference genome coverages of 94.8% (Canu) and 91.4% (Flye). In order to test the quality of these assemblies, we performed a two-step evaluation. Firstly, we considered the BUSCO scores and inquired for a supplemental set of genes using BLAST. Subsequently, we appraised the total content of natural transposons (NTs) relative to the reference genome (ISO1 strain) and mapped the mdg1 retroelement as a resolution assayer. Our results reveal that filtered data provide only slightly enhanced results when considering genes identification, but the use of unfiltered data had a consistent positive impact on the global evaluation of the NTs content. Our comparative studies also revealed differences between Flye and Canu assemblies regarding the annotation of unique versus repetitive genomic features. In our hands, Flye proved to be moderately better for gene identification, while Canu clearly outperformed Flye for NTs analysis. Data concerning the NTs content were compared to those obtained with ONT for the D. melanogaster ISO1 strain, revealing that our strategy conducted to better results. Additionally, the parameters of our ONT reads and assemblies are similar to those reported for ONT experiments performed on various model organisms, revealing that our assembly data are appropriate for a proficient annotation of the Horezu genome.     

In Vivo Silencing of Genes Coding for dTip60 Chromatin Remodeling Complex Subunits Affects Polytene Chromosome Organization and Proper Development in Drosophila melanogaster

Chromatin organization is developmentally regulated by epigenetic changes mediated by histone-modifying enzymes and chromatin remodeling complexes. In Drosophila melanogaster, the Tip60 chromatin remodeling complex (dTip60) play roles in chromatin regulation, which are shared by evolutionarily-related complexes identified in animal and plants. Recently, it was found that most subunits previously assigned to the dTip60 complex are shared by two related complexes, DOM-A.C and DOM-B.C, defined by DOM-A and DOM-B isoforms, respectively. In this work, we combined classical genetics, cell biology, and reverse genetics approaches to further investigate the biological roles played during Drosophila melanogaster development by a number of subunits originally assigned to the dTip60 complex.     

pEGFP-C1-GnRH/TRS在HeLa细胞中的遗传稳定性

目的研究质粒pEGFP-C1-GnRH/TRS在HeLa细胞中的遗传稳定性。方法取0代及传至第10、20、30和40代的工程细胞,在有选择压力(加G418)的条件下,测定pEGFP-C1-GnRH/TRS质粒丢失率。分别提取各代次工程细胞质粒DNA进行双酶切鉴定。将经酶切鉴定正确的第40代工程细胞质粒测序,并将各代次工程细胞加压筛选后,于荧光显微镜下观察。结果连续传10、20、30和40代后,质粒丢失率均不超过2%。不同代次的工程细胞质粒DNA经BamHⅠ/EcoRⅠ双酶切,酶切图谱相同。第40代质粒的GnRH/TRS序列与原代质粒相同。第40代细胞荧光分析与原代细胞相似。结论质粒pEGFP-C1-GnRH/TRS在HeLa细胞中有较好的遗传稳定性。     

Silicon analogues of the nonpeptidic GnRH antagonist AG-045572: syntheses, crystal structure analyses, and pharmacological characterization

AG‐045572 (CMPD1, 1 a ) is a nonpeptidic gonadotropin‐releasing hormone (GnRH) antagonist that has been investigated for the treatment of sex hormone‐related diseases. In the context of systematic studies on sila‐substituted drugs, the silicon analogue disila‐AG‐045572 ( 1 b ) and its derivative 2 were prepared in multi‐step syntheses and characterized by elemental analyses (C, H, N), NMR spectroscopic studies (¹H, ¹³C, ²⁹Si), and single‐crystal X‐ray diffraction. The pharmacological properties of compounds 1 a , 1 b , and 2 were compared in terms of their in vitro potency at cloned human and rat GnRH receptors. Compounds 1 a and 2 were also examined in regard to their pharmacokinetics and in vivo efficacy in both castrated rat (luteinizing hormone (LH) suppression) and intact rat (testosterone suppression) models. The efficacy and pharmacokinetic profiles of 1 a and its silicon‐containing analogue 2 appear similar, indicating that replacement of the 5,6,7,8‐tetrahydronaphthalene ring system by the 1,3‐disilaindane skeleton led to retention of efficacy. Therefore, the silicon compound 2 represents a novel drug prototype for the design of potent, orally available GnRH antagonists suitable for once‐daily dosing.     

Mutants of the white ABCG Transporter in Drosophila melanogaster Have Deficient Olfactory Learning and Cholesterol Homeostasis

Drosophila’s white gene encodes an ATP-binding cassette G-subfamily (ABCG) half-transporter. White is closely related to mammalian ABCG family members that function in cholesterol efflux. Mutants of white have several behavioral phenotypes that are independent of visual defects. This study characterizes a novel defect of white mutants in the acquisition of olfactory memory using the aversive olfactory conditioning paradigm. The w¹¹¹⁸ mutants learned slower than wildtype controls, yet with additional training, they reached wildtype levels of performance. The w¹¹¹⁸ learning phenotype is also found in the w^apricot and w^coral alleles, is dominant, and is rescued by genomic white and mini-white transgenes. Reducing dietary cholesterol strongly impaired olfactory learning for wildtype controls, while w¹¹¹⁸ mutants were resistant to this deficit. The w¹¹¹⁸ mutants displayed higher levels of cholesterol and cholesterol esters than wildtype under this low-cholesterol diet. Increasing levels of serotonin, dopamine, or both in the white mutants significantly improved w¹¹¹⁸ learning. However, serotonin levels were not lower in the heads of the w¹¹¹⁸ mutants than in wildtype controls. There were also no significant differences found in synapse numbers within the w¹¹¹⁸ brain. We propose that the w¹¹¹⁸ learning defect may be due to inefficient biogenic amine signaling brought about by altered cholesterol homeostasis.     

Volatiles Production and Attractiveness to the Mexican Fruit Fly of Enterobacter agglomerans Isolated from Apple Maggot and Mexican Fruit Flies

We investigated two strains of uricase (+) Enterobacter agglomerans, one isolated from the apple maggot fly (AMF) and one from the Mexican fruit fly (MFF), for 1) attractiveness to MFF, and 2) production of attractive chemicals. Regarding chemicals demonstrated attractive to the MFF, the MFF bacterial strain produced more 2,5-dimethylpyrazine, 2-phenylethanol, and indole than the AMF strain, whereas the AMF, but not the MFF strain, produced 3-hydroxybutanone. Cell types that predominated in plated subcultures varied from batch to batch resulting in variation in volatiles production, especially by the AMF strain where indole was sometimes a major component of the odor and at other times not detectable. Despite the greater production of attractive chemicals by the MFF strain, the AMF strain was consistently more attractive and the MFF strain was not different from uninoculated control plates. Statistical analyses indicated negative correlations of attractiveness with production of indole, 2,5-dimethylpyrazine, and 2-phenylethanol, and positive correlation with 3-hydroxybutanone. Results support previous findings with the Mexican fruit fly that showed combinations of attractive chemicals sometimes are not attractive.     

Consumption and Metabolism of 1,2-Dimethoxy-4-(3-Fluoro-2-Propenyl)Benzene, a Fluorine Analog of Methyl Eugenol, in the Oriental Fruit Fly Bactrocera dorsalis (Hendel)

Methyl eugenol (ME) is a natural phenylpropanoid highly attractive to oriental fruit fly Bactrocera dorsalis (Hendel) males. The flies eagerly feed on ME and produce hydroxylated metabolites with both pheromonal and allomonal functions. Side-chain metabolic activation of ME has long been recognized as a primary reason for hepatocarcinogenicity of this compound on rodents. In an attempt to develop a safer alternative to ME for fruit fly management, we developed a fluorine analog 1,2-dimethoxy-4-(3-fluoro-2-propenyl)benzene (I), which, in earlier field tests, was as active to the oriental fruit fly as ME. Now we report that B. dorsalis males are not only attracted to, but also eagerly consume (up to ∼1 mg/insect) compound I, thus recognizing this fluorinated benzene as a close kin of the natural ME. The flies metabolized the fluorine analog I in a similar fashion producing mostly two hydroxylated products, 2-(3-fluoro-2-propenyl)-4,5-dimethoxyphenol (II) and (E)-coniferyl alcohol (III), which they stored in rectal glands. However, the introduction of the fluorine atom at the terminal carbon atom of the double bond favors the ring hydroxylation over a side-chain metabolic oxidation pathway, by which coniferyl alcohol is produced. It also appears that fluorination overall impedes the metabolism: at high feed rate (10 μl per 10 males), the flies consumed in total more fluorine analog I than ME but were unable to metabolize it as efficiently as ME.     

Ring-Fluorinated Analog of Methyl Eugenol: Attractiveness to and Metabolism in the Oriental Fruit Fly, <Emphasis Type="Italic">Bactrocera Dorsalis</Emphasis> (Hendel)

Oriental fruit fly, Bactrocera dorsalis (Hendel), males are highly attracted to the natural phenylpropanoid methyl eugenol (ME). They compulsively feed on ME and metabolize it to ring and side-chain hydroxylated compounds that have both pheromonal and allomonal functions. Side-chain metabolic activation of ME leading to (E)-coniferyl alcohol has long been recognized as a primary reason for hepatocarcinogenicity of this compound in rodents. Earlier, we demonstrated that introduction of a fluorine atom at the terminal carbon of the ME side chain significantly depressed metabolism and specifically reduced formation of coniferyl alcohol but had little effect on field attractiveness to B. dorsalis. In the current paper, we demonstrate that fluorination of ME at the 4 position of the aromatic ring blocks metabolic ring-hydroxylation but overall enhances side-chain metabolism by increasing production of fluorinated (E)-coniferyl alcohol. In laboratory experiments, oriental fruit fly males were attracted to and readily consumed 1,2-dimethoxy-4-fluoro-5-(2-propenyl)benzene (I) at rates similar to ME but metabolized it faster. Flies that consumed the fluorine analog were as healthy post feeding as ones fed on methyl eugenol. In field trials, the fluorine analog I was ∼50% less attractive to male B. dorsalis than ME.

Transcriptome Profile of Thyroid Glands in Bile Duct Ligation Mouse Model

Thyroid hormone (TH) contributes to multiple cellular mechanisms in the liver, muscle cells, adipose tissue, and brain, etc. In particular, the liver is an important organ in TH metabolism for the conversion of thyronine (T4) into triiodothyronine (T3) by the deiodinase enzyme. TH levels were significantly decreased and thyroid-stimulating hormone (TSH) levels were significantly increased in patients with liver failure compared with normal subjects. Among liver failure diseases, hepatic encephalopathy (HE) deserves more attention because liver damage and neuropathologies occur simultaneously. Although there is numerous evidence of TH dysregulation in the HE model, specific mechanisms and genetic features of the thyroid glands in the HE model are not fully understood. Here, we investigated the significantly different genes in the thyroid glands of a bile duct ligation (BDL) mouse model as the HE model, compared to the thyroid glands of the control mouse using RNA sequencing. We also confirmed the alteration in mRNA levels of thyroid gland function-related genes in the BDL mouse model. Furthermore, we evaluated the increased level of free T4 and TSH in the BDL mouse blood. Thus, we emphasize the potential roles of TH in liver metabolism and suggest that thyroid dysfunction-related genes in the HE model should be highlighted for finding the appropriate solution for an impaired thyroid system in HE.     

Identification of Chemicals Emitted by Calling Males of the Sapote Fruit Fly, <Emphasis Type="Italic">Anastrepha serpentina</Emphasis>

Emissions from sexually active Anastrepha serpentina males were collected by solid-phase microextraction. Calling behavior of wild-type males showed no clear peak during the day, except that it was evident less frequently immediately after daybreak and just before dark. Calling by laboratory males was highest between 8 and 11 h after onset of the photophase, and mating by wild flies occurred mostly between 6 and 10 h after onset of the photophase. Two major components of male emissions were identified as 2,5-dimethylpyrazine (DMP) and 3,6-dihydro-2,5-dimethylpyrazine (DHDMP). DHDMP was synthesized, and the identity of the natural product confirmed by comparison of gas chromatographic retention times and mass spectrum. Emissions of DMP and DHMP were greatest during peak calling behavior, with males emitting up to 1.8 and 3.3 μg/h of DMP and DHDMP, respectively. A minor component, which did not vary with time of day, was identified as 2,3,5-trimethylpyrazine. To our knowledge, this is the first report of 3,6-dihydro-2,5-dimethylpyrazine in nature. D. C. Robacker and R. J. Bartelt are now retired.     

Biphasic Roles of Clock Genes and Bone Morphogenetic Proteins in Gonadotropin Expression by Mouse Gonadotrope Cells

Roles of Clock genes and the bone morphogenetic protein (BMP) system in the regulation of gonadotropin secretion by gonadotropin-releasing hormone (GnRH) were investigated using mouse gonadotropin LβT2 cells. It was found that luteinizing hormone (LH)β mRNA expression level in LβT2 cells changed gradually over time, with LHβ expression being suppressed in the early phase up to 12 h and then elevated in the late phase 24 h after GnRH stimulation. In addition, the mRNA expression levels of Clock genes, including Bmal1, Clock, Per2, and Cry1, also showed temporal changes mimicking the pattern of LHβ expression in the presence and absence of GnRH. Notably, the expression levels of Bmal1 and Clock showed strong positive correlations with LHβ mRNA expression levels. Moreover, a functional link of the ERK signaling of mitogen-activated protein kinases (MAPKs) in the suppression of LHβ mRNA expression, as well as Bmal1 and Clock mRNA expression by GnRH at the early phase, was revealed. Inhibition of Bmal1 and Clock expression using siRNA was involved in the reduction in LHβ mRNA levels in the late phase 24 h after GnRH stimulation. Furthermore, in the presence of BMP-6 and -7, late-phase Bmal1 and LHβ mRNA expression after GnRH stimulation was significantly attenuated. Collectively, the results indicated that LH expression in gonadotrope cells exhibits Bmal1/Clock-dependent fluctuations under the influence of GnRH and that the fluctuations are regulated by ERK and BMPs in the early and late stages, respectively, in a phase-dependent manner after GnRH stimulation.     

Structure of the hydrogen bonds and silica defects in the tetrahedral double chain of xonotlite

We use a combined experimental/theoretical approach to investigate the structure and stability of the silicate tetrahedral double chain in xonotlite. The M2a2bc polytype of xonotlite was found to be dominant in the synthetic samples. This polytype was used to predict the relative stability of silica defects in the tetrahedral double chain of xonotlite. The defects in Q³ sites were found to be substantially more abundant compared to Q² tetrahedra. Moreover, the paired substitutions in the silicate double chain at neighbouring Q³ sites are energetically more stable then isolated Q³ defects. The defects in the silicate chains of xonotlite offer structural channels accessible for diffusion of ions and water. The defect sites are potential candidates for incorporation of foreign ions in the xonotlite structure. Based on the crystal-chemical similarities with xonotlite the structure of silicate chains in tobermorite and C-S-H phases is discussed.     

Cement hydration and microstructure formation in the presence of water-soluble polymers

Hardening of cement mortars modified with small amounts of water-soluble polymers implies both cement hydration and polymer film formation. In this paper, the effect of the presence of water-soluble polymers on the cement hydration reactions is investigated by means of isothermal calorimetry, thermal analysis, FT-IR spectroscopy and SEM investigation. In spite of an initial retardation of the hydration reactions, a higher degree of hydration is found after 90 days for 1% PVAA, MC and HEC modified mortars, due to a better dispersion of the cement particles in the mixing water. MC also affects the morphology of the Ca(OH)₂ crystals. Polymer bridges are detected between the layered crystals, gluing the layers together and strengthening the microstructure. Additionally, the internal cohesion of all bulk polymer modified cement pastes is improved. In the presence of the polymers, a more cohesive microstructure with a smaller amount of microcracks is created.     

On the mathematics of time-dependent apparent chloride diffusion coefficient in concrete

This paper provides an improved mathematical analysis of chloride penetration into concrete employing a time-dependent diffusion coefficient for the solution of Fick's second law of diffusion. In the paper the possible errors caused by the application of oversimplified mathematical expressions used in some models for the evaluation of service life of reinforced concrete structures are discussed. The results from this mathematical analysis demonstrate that some models based on the oversimplified error function complement (ERFC) solutions may easily overestimate the service life by orders of magnitude, especially when the age factor is high. Some chloride profiles after up to 10 years' field exposure were used to compare the oversimplified with the improved models. The results show that both the oversimplified and the improved models fairly well predict the 10 years' chloride ingress in Portland cement concrete, but the oversimplified ERFC model significantly underestimates the chloride ingress in concrete with fly ash.     

GLP-2 Prevents Neuronal and Glial Changes in the Distal Colon of Mice Chronically Treated with Cisplatin

Cisplatin is a chemotherapeutic agent widely used for the treatment of solid cancers. Its administration is commonly associated with acute and chronic gastrointestinal dysfunctions, likely related to mucosal and enteric nervous system (ENS) injuries, respectively. Glucagon-like peptide-2 (GLP-2) is a pleiotropic hormone exerting trophic/reparative activities on the intestine, via antiapoptotic and pro-proliferating pathways, to guarantee mucosal integrity, energy absorption and motility. Further, it possesses anti-inflammatory properties. Presently, cisplatin acute and chronic damages and GLP-2 protective effects were investigated in the mouse distal colon using histological, immunohistochemical and biochemical techniques. The mice received cisplatin and the degradation-resistant GLP-2 analog ([Gly2]GLP-2) for 4 weeks. Cisplatin-treated mice showed mucosal damage, inflammation, IL-1β and IL-10 increase; decreased number of total neurons, ChAT- and nNOS-immunoreactive (IR) neurons; loss of SOX-10-IR cells and reduced expression of GFAP- and S100β-glial markers in the myenteric plexus. [Gly2]GLP-2 co-treatment partially prevented mucosal damage and counteracted the increase in cytokines and the loss of nNOS-IR and SOX-10-IR cells but not that of ChAT-IR neurons. Our data demonstrate that cisplatin causes mucosal injuries, neuropathy and gliopathy and that [Gly2]GLP-2 prevents these injuries, partially reducing mucosal inflammation and inducing ENS remodeling. Hence, this analog could represent an effective strategy to overcome colonic injures induced by cisplatin.     

Method to assess the quality of casein used as superplasticizer in self-levelling compounds

A fast and accurate method of assessing the quality of casein superplasticizer is presented. The method is based on analysis of the content of α-, β- and κ-casein proteins contained in whole casein by ion exchange fast protein liquid chromatography (FPLC). The chromatographic profiles of six commercial casein samples were determined, revealing that the amount of κ-casein present in the biopolymer is the main assessment criteria for the quality of casein. For high dispersing effectiveness, the content of κ-casein needs to be high. The reason is that at pH ~ 12, a high content of κ-casein results in submicelles possessing smaller size (diameter ~ 10 nm), as was proven by dynamic light scattering measurement (DLS). These smaller submicelles are supposed to adsorb on cement in higher amount than large submicelles. Using this FPLC method, the dispersing performance of any casein sample can be determined very quickly without physical testing of mortar.     

Resistivity of cementitious materials measured in diaphragm migration cells: The effect of the experimental set-up

Experimental measurements and numerical analysis were carried out to study the effect of the cell geometry in resistivity determinations. The resistance of the diaphragm in cement paste and mortar samples was determined using impedance spectroscopy. Numerical simulations were performed using finite element method (FEM). Several surface ratios (geometrical diaphragm surface to electrolyte-diaphragm surface, S/S′) were investigated. The thickness of the diaphragm, L, was also considered.The experimental results show a significant decrease of the apparent resistivity when the ratio S/S′ increases. Similar trend was observed for increasing values of the L/S′ ratio. The numerical simulations can explain the experimental findings and also allow to formulate a general rule for the design of migration and diffusion experiments in porous materials.