Hydration Shells of DNA from the Point of View of Terahertz Time-Domain Spectroscopy

Hydration plays a fundamental role in DNA structure and functioning. However, the hydration shell has been studied only up to the scale of 10–20 water molecules per nucleotide. In the current work, hydration shells of DNA were studied in a solution by terahertz time-domain spectroscopy. The THz spectra of three DNA solutions (in water, 40 mm MgCl₂ and 150 mM KCl) were transformed using an effective medium model to obtain dielectric permittivities of the water phase of solutions. Then, the parameters of two relaxation bands related to bound and free water molecules, as well as to intermolecular oscillations, were calculated. The hydration shells of DNA differ from undisturbed water by the presence of strongly bound water molecules, a higher number of free molecules and an increased number of hydrogen bonds. The presence of 40 mM MgCl₂ in the solution almost does not alter the hydration shell parameters. At the same time, 150 mM KCl significantly attenuates all the found effects of hydration. Different effects of salts on hydration cannot be explained by the difference in ionic strength of solutions, they should be attributed to the specific action of Mg²⁺ and K⁺ ions. The obtained results significantly expand the existing knowledge about DNA hydration and demonstrate a high potential for using the THz time-domain spectroscopy method.     

Lipase-catalyzed methanolysis of triricinolein in organic solvent to produce 1,2(2,3)-diricinolein

The objective of this study was to find the optimal parameters for lipase-catalyzed methanolysis of triricinolein to produce 1,2(2,3)-diricinolein. Four different immobilized lipases were tested, Candida antarctica type B (CALB), Rhizomucor miehei (RML), Pseudomonas cepacia (PCL), and Penicillium roquefortii (PRL). n-Hexane and diisopropyl ether (DIPE) were examined as reaction media at three different water activities (a _w), 0.11, 0.53, and 0.97. The consumption of triricinolein and the formation of 1,2(2,3)-diricinolein, methyl ricinoleate, and ricinoleic acid were followed for up to 48 h. PRL gave the highest yield of 1,2(2,3)-diricinolein. Moreover, this lipase showed the highest specificity for the studied reaction, i.e., high selectivity for the reaction with triricinolein but low for 1,2(2,3)-diricinolein. Recoveries of 93 and 88% DAG were obtained using PRL in DIPE at a _w of 0.11 and 0.53, respectively. Further, NMR studies showed that a higher purity of the 1,2(2,3)-isomer vs. the 1,3-isomer was achieved at higher a _w (88% at a _w=0.53), compared to lower a _w (71% at a _w=0.11). The DAG obtained was acylated by the DAG acyltransferase from Arabidopsis thaliana. Therefore, this enzymatic product is a useful enzyme substrate for lipid biosynthesis. Accordingly, the use of PRL in DIPE at a _w 0.53 is considered optimal for the synthesis of 1,2(2,3)-diricinolein from triricinolein.     

The Influence of Water Activity on the Hydration Rate of Tricalcium Silicate

Tricalcium silicate does not undergo hydration at relative humidities (RH's) below 80%. But, the rate at which its hydration rate decreases as a function of the RH has not yet been elucidated. By invoking correspondence between RH and water activity (a_H, unitless), both of which are related to the chemical potential of water, the reaction evolutions of triclinic tricalcium silicate (i.e., T1‐Ca₃SiO₅ or C₃S) are tracked in water + isopropanol (IPA) mixtures, prepared across a wide range of water activities. Emphasis is placed on quantifying the: (a) rate of hydration as a function of a_H, and (b) the critical (initial, a_H0c or the achieved) water activity at which hydration effectively ceases, i.e., does not progress; here identified to be ≈ 0.70. The hydration of tricalcium silicate is arrested even when the system remains near saturated with a liquid phase, such that small, if any, capillary stresses develop. This suggests that changes in chemical potential induced via a vapor‐phase or liquid‐phase route both induce similar suppressions of C₃S hydration. A phase boundary nucleation and growth (pBNG) model is fit to measured hydration rates from the onset of the acceleration period until well beyond the rate maximum when the water activity is altered. The simulations suggest that for a fixed hydrate nucleation density, any water activity reductions consistently suppress the growth of hydration products. Thermodynamic considerations of how water activity changes may influence reactions/hydrate evolutions are discussed. The outcomes improve our understanding of the chemical factors that influence the rate of Ca₃SiO₅ hydration.     

Effects of the Protonation State of Titratable Residues and the Presence of Water Molecules on Nocodazole Binding to β‐Tubulin

Regulation of microtubule assembly by antimitotic agents is a potential therapeutic strategy for the treatment of cancer, parasite infections, and neurodegenerative diseases. One of these agents is nocodazole (NZ), which inhibits microtubule polymerization by binding to β‐tubulin. NZ was recently co‐crystallized in Gallus gallus tubulin, providing new information about the features of interaction for ligand recognition and stability. In this work, we used state‐of‐the‐art computational approaches to evaluate the protonation effects of titratable residues and the presence of water molecules in the binding of NZ. Analysis of protonation states showed that residue E198 has the largest modification in its pK_a value. The resulting E198 pK_a value, calculated with pH‐REMD methodology (pK_a=6.21), was higher than the isolated E amino acid (pK_a=4.25), thus being more likely to be found in its protonated state at the binding site. Moreover, we identified an interaction between a water molecule and C239 and G235 as essential for NZ binding. Our results suggest that the protonation state of E198 and the structural water molecules play key roles in the binding of NZ to β‐tubulin.     

Modeling Alcohol Dehydrogenase Catalysis in Deep Eutectic Solvent/Water Mixtures

The use of oxidoreductases (EC1) in non-conventional reaction media has been increasingly explored. In particular, deep eutectic solvents (DESs) have emerged as a novel class of solvents. Herein, an in-depth study of bioreduction with an alcohol dehydrogenase (ADH) in the DES glyceline is presented. The activity and stability of ADH in mixtures of glyceline/water with varying water contents were measured. Furthermore, the thermodynamic water activity and viscosity of mixtures of glyceline/water have been determined. For a better understanding of the observations, molecular dynamics simulations were performed to quantify the molecular flexibility, hydration layer, and intraprotein hydrogen bonds of ADH. The behavior of the enzyme in DESs follows the classic dependence of water activity (a_W) in non-conventional media. At low a_W values (<0.2), ADH does not show any activity; at higher a_W values, the activity was still lower than that in pure water due to the high viscosities of the DES. These findings could be further explained by increased enzyme flexibility with increasing water content.     

Lipase‐catalyzed esterification of cinnamic acid and oleyl alcohol in organic solvent media

The esterification of cinnamic acid (CA) and oleyl alcohol (OA) in organic solvent media by immobilized lipase Novozym 435 was optimized in terms of selected parameters, including the logarithm of the 1‐octanol/water partition coefficient of the organic solvent (log P, 0.29–4.5), initial water activity (a_w, 0.05–0.75), agitation speed (0–200 rpm), temperature (35–65 °C) and ratio of substrates (CA/OA, 1.0:0.5–1.0:6.0). The results showed that the more hydrophobic solvent mixtures and lower initial a_w values resulted in a higher enzymatic activity and bioconversion yield. The most appropriate solvent medium and initial a_w value was the mixture of iso‐octane/2‐butanone (85:15, v/v) and 0.05, respectively. The results also showed that an agitation speed of 150 rpm and a reaction temperature of 55 °C were optimal for the reaction system. The activation energy (E_a) of the esterification reaction was calculated as 43.6 kJ mol^?1. The optimal ratio of CA to OA was 1.0:6.0, with the absence of any inhibition by OA. Using the optimized conditions, the maximum enzymatic activity was 390.3 nmol g^?1 min^?1, with a bioconversion yield of 100% after 12 days of reaction. In addition, the electrospray ionization‐mass spectroscopy analysis confirmed that the major end product of the esterification reaction was oleyl cinnamate. Copyright © 2005 Society of Chemical Industry     

Activity of immobilized Thermomyces lanuginosus and Candida antarctica B Lipases in Interesterification Reactions: Effect of the Aqueous Microenvironment

Lipases are enzymes used in numerous reactions of industrial interest. Depending on their aqueous microenvironment, lipases can catalyze hydrolysis or, conversely, organic synthesis like interesterification. This reaction can be used as a method to modify the physical and chemical properties of fats and oils, a basic process for production of “structured lipids”. For such synthesis reactions, thermodynamic water activity (a_w) of the catalyst is generally the most important parameter to control. Actually, it will directly determine the performance of the synthesis, namely its yield, selectivity and stability. Effect of the a_w on the activity of immobilized Thermomyces lanuginosus and Candida antarctica B lipases in interesterification reactions was studied. Water sorption and desorption isotherms were determined, showing a phenomenon of hysteresis for the Thermomyces lanuginosus lipase. Evaluation of the influence of a_w on reaction yields revealed that the IE activity tends to increase with the water activity of immobilized Thermomyces lanuginosus lipase. In contrast, a_w had little influence in the case of the Candida antarctica B lipase.     

Lipase-catalyzed synthesis of chiral triglycerides

Under certain reaction conditions, the acidolysis of tripalmitin with oleic acid using immobilized lipase from Rhizomucor miehei resulted in a higher level of monosubstituted oleoyldipalmitoyl (OPP) triglycerides than had been predicted according to kinetic modeling. The reaction products were subjected to chiral analysis by high-performance liquid chromatography (HPLC), which indicated that the enzyme was more active at the sn-1 position of the triglyceride than at the sn-3 position, resulting in synthesis of the chiral triglyceride 1-oleoyl-2,3-dipalmitoyl-sn-glycerol. A kinetic model was developed and was correlated with the HPLC method to provide a simple means to predict the stereoselectivity of lipase-catalyzed reactions. By using the model, the stereoselectivity of immobilized Rhizomucor miehei lipase was found to depend strongly on the initial water activity (a _w) of the reaction mixture, with greater selectivity occurring at lower a _w. The sn-1 selectivity was essentially maintained using various solvents, or without solvent, when a _w was kept constantly low. Variation in the fatty acid composition of the triglyceride indicated that shorter-chain fatty acids result in greater stereoselectivity, while variation of the chainlength of the free fatty acid indicated an enhancement by the longest chainlength. The stereoselectivity of this lipase was confirmed using a new ¹³C nuclear magnetic resonance method. By using immobilized R. miehei lipase at low a _w approximately 80% of the chiral triglyceride found in the reaction mixture was the sn-1 enantiomer, at high reaction conversion.     

Influence of water activity on hydration of tricalcium aluminate-calcium sulfate systems

The hydration of tricalcium silicate (C₃S)—the major phase in cement—is effectively arrested when the activity of water (a_H) decreases below the critical value of 0.70. While it is implicitly understood that the reduction in a_H suppresses the hydration of tricalcium aluminate (C₃A: the most reactive phase in cement), the dependence of kinetics of C₃A hydration on a_H and the critical a_H at which hydration of C₃A is arrested are not known. This study employs isothermal microcalorimetry and complementary material characterization techniques to elucidate the influence of a_H on the hydration of C₃A in [C₃A + calcium sulfate (C$) + water] pastes. Reductions in water activity are achieved by partially replacing the water in the pastes with isopropanol. The results show that with decreasing a_H, the kinetics of all reactions associated with C₃A (eg, with C$, resulting in ettringite formation; and with ettringite, resulting in monosulfoaluminate formation) are proportionately suppressed. When a_H ≤0.45, the hydration of C₃A and the precipitation of all resultant hydrates are arrested; even in liquid saturated systems. In addition to—and separate from—the experiments, a thermodynamic analysis also indicates that the hydration of C₃A does not commence or advance when a_H ≤0.45. On the basis of this critical a_H, the solubility product of C₃A (K_C3A) was estimated as 10^−20.65. The outcomes of this work articulate the dependency of C₃A hydration and its kinetics on water activity, and establish—for the first time—significant thermodynamic parameters (ie, critical a_H and K_C3A) that are prerequisites for numerical modeling of C₃A hydration.     

Preparation and properties of porous L‐tryptophan imprinted latex membrane from core‐shell emulsion

Molecularly imprinted latex membrane (MILM) is prepared by core‐shell emulsion technique in the presence of a template molecule (L ‐Tryptophan). A hard inward and soft outward microstructure latex particle is designed to obtain MILM with both flexibility and impact strength. Molecularly imprinted layer with high crosslinking degree is grafted on the surface of core‐shell latex particles. NaCl, glucose, urea, polyethylene glycol, M_w 300, etc., are added during the film‐forming process to produce porous microstructure in MILM. Fourier transform infrared spectroscopy (FTIR) and Scatchard analysis are used to investigate the interaction between L ‐Tryptophan and MILM and the binding ability of the resultant MILM, respectively. The functional binding and separation performances in aqueous medium towards template are carried out. The results reveal that the content and type of porogen and the shell composition have significant effects on adsorption capacity and separation ability. MILM with glucose as porogen shows high recognition towards the template with adsorption separation factor reaching 9.06. © 2012 Wiley Periodicals, Inc. J. Appl. Polym. Sci., 2013     

Molecular weight distribution of commercial PVC

The molecular weight distribution (MWD) of commercial suspension grade poly(vinyl chloride) (PVC) resins with K values from 50 to 93 and mass grade PVC resins with K values from 58 to 68 has been determined by size exclusion chromatography (SEC), using literature Mark‐Houwink coefficients. The MWD is characterized by the number average molecular weight (M_n), the weight average molecular weight (M_w) and the polydispersity (M_w/M_n). Our results for M_w are consistent with recently published data, but we find different results for M_n and consequently for M_w/M_n. The polydispersity of PVC increases with increasing K value. This effect can be explained by two mechanisms. The first mechanism is a reduced terminating reaction rate between two growing polymer chains (disproportionation) at higher molecular weight owing to the reduced mobility of the polymer chains. The second mechanism is long‐chain branching of molecules with high molecular weight which lets the molecules grow at two ends. For two examples graphs of the measured MWD are compared with the theoretically expected MWD.     

Regioselective acylation of flavonoids catalyzed by lipase in low toxicity media

Flavonoid fatty esters were prepared by acylation of flavonoids (rutin and naringin) by fatty acids (C8, C10, C12), catalyzed by immobilized lipase from Candida antarctica in various solvent systems. The reaction parameters affecting the conversion of the enzymatic process, such as the nature of the organic solvent and acyl donor used, the water activity (a_w) of the system, as well as the acyl donor concentration have been investigated. At optimum reaction conditions, the conversion of flavonoids was 50—60% in tert‐butanol at a_w less than 0.11. In all cases studied, only flavonoid monoester was identified, which indicates that this lipase‐catalyzed esterification is regioselective.     

Lipase/acyltransferase‐catalysed interesterification of fat blends containing n‐3 polyunsaturated fatty acids

The lipase/acyltransferase from Candida parapsilosis is an original biocatalyst that preferentially catalyses alcoholysis over hydrolysis in biphasic aqueous/organic media. In this study, the performance of the immobilised biocatalyst in the interesterification in solvent‐free media of fat blends rich in n‐3 polyunsaturated fatty acids (n‐3 PUFA) was investigated. The interesterification activity of this biocatalyst at a water activity (a_w) of 0.97 was similar to that of commercial immobilised lipases at a_w values lower than 0.5. Thus, the biocatalyst was further used at an a_w of 0.97. Response surface modelling of interesterification was carried out as a function of medium formulation, reaction temperature (55–75 °C) and time (30–120 min). Reaction media were blends of palm stearin (PS), palm kernel oil and triacylglycerols (TAG) rich in n‐3 PUFA (“EPAX 4510TG”; EPAX AS, Norway). The best results in terms of decrease in solid fat content were observed for longer reaction time (>80 min), lower temperature (55–65 °C), higher “EPAX 4510TG” content and lower PS concentration. Reactions at higher temperature led to final interesterified fat blends with lower free fatty acid contents. TAG with high equivalent carbon number (ECN) were consumed while acylglycerols of lower ECN were produced.     

A Reaction Zone Hypothesis for the Effects of Particle Size and Water‐to‐Cement Ratio on the Early Hydration Kinetics of C3S

The hydration kinetics of tricalcium silicate (C₃S) has been the subject of much study, yet the experimentally observed effects of the water‐to‐cement (w/c) ratio and particle size distribution have been difficult to explain with models. Here, we propose a simple hypothesis that provides an explanation of the lack of any significant effect of w/c on the kinetics and for the strong effect of the particle size distribution on the amount of early hydration associated with the main hydration peak. The hypothesis is that during the early hydration period the calcium–silicate–hydrate product forms only in a reaction zone close to the surface of the C₃S particles. To test the hypothesis, a new microstructure‐based kinetics (MBK) model has been developed. The MBK model treats the C₃S particle size distribution in a statistical way to save computation time and treats the early hydration as essentially a boundary nucleation and growth process. The MBK model is used to fit kinetic data from two published studies for C₃S with different size distributions, one for alite (impure C₃S) pastes and one for stirred C₃S suspensions. The model is able to fit all the data sets with parameters that show no significant trend with particle size, providing support for the reaction zone hypothesis.     

Enhancement of both reaction yield and rate of synthesis of structured triacylglycerol containing eicosapentaenoic acid under vacuum with water activity control

Production of structured triacylglycerols (sTAG) containing eicosapentaenoic acid (EPA) at the sn-1 (or 3) position using Lipozyme in a solvent-free system was studied. Optimal water activity (a _w) for the synthesis of the sTAG was investigated. Vacuum was applied to shift reaction equilibrium toward the synthesis reaction by removing by-products. During vacuum application, the water level of the reaction system was controlled at the optimal level by addition of a suitable amount of water at a predetermined interval. Intermittent periodic addition of a suitable amount of water into the reaction mixture made the reaction rate faster than that without adding water. A molar yield of 89.7% of the targeted sTAG was obtained after 16 h reaction with a _w control during the vacuum application as compared with the yield of 87.0% after 24 h of reaction without a _w control during the vacuum application.     

Water activity-adjusted enzymatic partial hydrolysis of phospholipids to concentrate polyunsaturated fatty acids

Selective partial hydrolyses of egg yolk phospholipid and squid skin phospholipid were carried out. By keeping the water activity (a _w) of Lipozyme IM at an intermediate level, it was easy to concentrate docosahexaenoic acid (DHA). It was also possible to concentrate both DHA and arachidonic acid (AA) simultaneously to a certain level under this a _w range. However, it was impossible to concentrate AA alone when DHA was present. Though there is a limitation in concentrating AA exclusively, the proposed a _w-adjusted hydrolytic reaction is a promising way for preparing phospholipids rich in DHA.     

Light‐Activated Reversible Imine Isomerization: Towards a Photochromic Protein Switch

Mutants of cellular retinoic acid‐binding protein II (CRABPII), engineered to bind all‐trans‐retinal as an iminium species, demonstrate photochromism upon irradiation with light at different wavelengths. UV light irradiation populates the cis‐imine geometry, which has a high pK_a, leading to protonation of the imine and subsequent “turn‐on” of color. Yellow light irradiation yields the trans‐imine isomer, which has a depressed pK_a, leading to loss of color because the imine is not protonated. The protein‐bound retinylidene chromophore undergoes photoinduced reversible interconversion between the colored and uncolored species, with excellent fatigue resistance.     

Hydraulic permeability of water in poly(vinyl alcohol) membranes as a function of the degree of hydration

Poly(vinyl alcohol) membranes were prepared by solution cast and subsequent annealing. The degree of crystallinity of the membranes at the dry state was not affected by the annealing, whereas the degree of hydration H was markedly changed. This made us assume a double network structure. Hydraulic permeability of water, K_w, in PVA membranes was measured to discuss the relation between H and the permeability. K_w increased with increasing H with increasing slope. The linear relation between the reduced permeability K_w/H and 1/H, expected from a free volume theory, was not obtained in the PVA membranes. This nonlinearity of the relation was confirmed also in various hydrogels reported by other authors. We found that a linear relation between H and logarithm of K_w/H, as expected from the Ogston's relation, is achieved in PVA and many other hydrogel membranes with H from 0.4 to 0.9. Under a given degree of hydration, the activation energy of permeation of PVA membrane was larger than that of cellulose, owing to the large amount of bound water in PVA membrane.     

Spray Drying of Skim Milk Mixed with Milk Permeate: Effect on Drying Behavior,Physicochemical Properties,and Storage Stability of Powder

The possibility of using milk permeate (MP) to lower the protein level of skim milk powder (SMP) in producing powders of 34% and lower protein is explored. Skim milk suspensions with various levels of MP were prepared by mixing SMP and MP powder (MPP) at the ratios of 1:0, 7:3, 3:7, and 0:1: from 34 to 5.3% protein. The suspensions were dried in a spray dryer with inlet and outlet temperatures of 180 and 80°C, respectively. Increasing permeate concentration in the mixture showed a greater tendency to stickiness manifested by lowered the cyclone recovery of the powder as more powder stuck on the wall of the dryer. Increasing permeate concentration in the resultant powder did not significantly affect the bulk density but led to a reduction in the particle size and also made the powder slight green and yellowish in color. It also found to lower the glass transition temperature (T_g ) of the skim milk powder (SMP) and induce crystallization of lactose at lower water activity (a_w  ≥ 0.328 for SMP:MPP of 3:7 and 0:1 compared to a_w  ≥ 0.0.432 for SMP:MPP of 1:0 and 3:7). Addition of MP in SMP lowered the T_g values of the resulting powders. The permeate fraction in spray-dried SMP/MPP mixtures found to lower the critical a_w and moisture content, suggesting the SMP mixed with MPP is more likely to become sticky than SMP alone (at 34% protein) when stored at a similar water activity and moisture content.     

Platinum(II) Diphosphinamine Complexes for the Efficient Hydration of Alkynes in Micellar Media

Highly active monomeric bis‐cationic platinum(II) catalysts bearing small bite angle diphosphinamine [N,N‐bis(diarylphosphino)amine] ‘PNP’ ligands efficiently catalyze Markovnikov hydration of terminal and internal alkynes to the corresponding ketones in water. Catalyst solubilization in water is achieved via ion pairing with anionic micelles formed by surfactant addition. The micelles ensure dissolution of apolar alkynes and promote the intimate contact between reagents and catalyst, while in organic‐water media in the absence of surfactants the reaction is sluggish. Hydration products can be isolated by means of extraction with an apolar solvent and the catalyst, that remains confined in the aqueous phase, can be recycled up to four times without loss of catalytic activity.