共查询到20条相似文献,搜索用时 31 毫秒
1.
Chaddock John A.; Roberts Lynne M. 《Protein engineering, design & selection : PEDS》1993,6(4):425-431
Ricin A-chain (RTA) is an N-glycosidase which removes a specificadenine residue from the large rRNA of eukaryotic ribosomes.As a consequence, the ribosome is inactivated and protein synthesisis inhibited leading to cell death. This report describes theeffects on enzyme activity of specific mutations of the conservedactive site Glu177. The activity of mutant proteins was initiallyscreened using an in vitro translation system. It was foundthat mutagenesis of Glu177 to Lys led to an apparent total inactivationof the enzyme, Glu177 to Ala had a small effect on activity,whereas the conservative Glu177 to Asp mutation had a significanteffect. The properties of Glu177 to Asp were investigated moreclosely. Mutant protein was purified from an Escherichia coliexpression system and kinetic analysis of the depurination activityassessed using salt-washed yeast ribosomes. It was shown thatthe K, of the mutant protein was unchanged when compared todata of wild type RTA; however, the kcat was significantly decreased(49-fold compared to wild type RTA). This suggests that Glu177plays a predominant role in the rate-limiting step of the enzymaticmechanism and not in substrate binding. These data are discussedin relation to other reports of ricin Glu177 substitutions. 相似文献
2.
Free energy simulations have been employed to rationalize thebinding differences between A-74704, a pseudo C2- symmetricinhibitor of HIV-1 protease and its diester analog. The diesteranalog inhibitor, which misses two hydrogen bonds with the enzymeactive site, is surprisingly only 10-fold weaker. The calculatedfree energy difference of 1.7 ± 0.6 kcal/mol is in agreementwith the experimental result. Further, the simulations showthat such a small difference in binding free energies is dueto (1) weaker hydrogen bond interactions between the two (P1and P1) NH groups of A-74704 with Gly27/Gly27' carbonyls ofthe enzyme and (2) the higher desolvation free energy of A-74704compared with its ester analog. The results of these calculationsand their implications for design of HIV-1 protease inhibitorsare discussed. 相似文献
3.
Copeland William C.; Vanderslice Peter; Robertus Jon D. 《Protein engineering, design & selection : PEDS》1987,1(5):419-423
The genes coding for histidine decarboxylase from a wild-typestrain and an autoactivation mutant strain of Lactobacillus30a have been cloned and expressed in Escherichia coli. Themutant protein, G58D, has a single Asp for Gly substitutionat position 58. The cloned genes were placed under control ofthe ß-galactosidase promoter and the products arenatural length, not fusion proteins. The enzyme kinetics ofthe proteins isolated from E. coli are comparable to those isolatedfrom Lactobacillus 30a. At pH 4.8 the Km of wild-type enzymeis 0.4 mM and the kcat = 2800 min1; the correspondingvalues for G58D are 0.5 mM and 2750 min1. The wild-typeand G58D have autoactivation half-times of 21 and 9 h respectivelyunder pseudophysiological conditions of 150 mM K+ and pH 7.0.At pH 7.6 and 0.8 M K+ the half times are 4.9 and 2.9 h. Therelatively slow rate of autoactivation for purified proteinand the differences in cellular and non-cellular activationrates, coupled with the fact that wild-type protein is readilyactivated in wild-type Lactobacillus 30a but poorly activatedin E. coli, suggest that wild-type Lactobacillus 30a containsa factor, possibly an enzyme, that enhances the activation rate. 相似文献
4.
McCafferty John; Jackson Ronald H.; Chiswell David J. 《Protein engineering, design & selection : PEDS》1991,4(8):955-961
We have demonstrated that an active enzyme can be expressedon the surface of a bacteriophage. The gene encoding alkalinephosphatase from Escherichia coli was cloned upstream of gene3, which encodes a minor coat protein of the filamentous bacteriophage,fd. A fusion protein of the correct size was detected from viralparticles by Western blotting. Ultrafiltration confirmed thatthe enzyme fusion behaves as part of a larger structure as wouldbe expected of an enzyme fused to a viral particle. Both wild-typealkaline phosphatase (Argl66) and an active site mutant (Ala166) expressed in this way retain catalytic activity and havequalitatively similar kinetic properties to free enzyme. Valueswere obtained for Km of 72.7 and 1070 µM respectivelywhilst relative kcat for the mutant was 36% of that for wild-type.Phage particles expressing alkaline phosphatase were bound toan immobilized inhibitor (arsenate-Sepharose) and eluted withproduct (20 mM inorganic phosphate). In this way, the functionalenzyme is co-purified with the DNA encoding it. This may permita novel approach to enzyme engineering based on affinity chromatographyof mutant enzymes expressed on the phage surface. 相似文献
5.
To understand the functional roles of Cys residues in the subunitof tryptophan synthase from Escherichia coli, single mutantsof the subunit, in which each of the three Cys residues wassubstituted with Ser, Gly, Ala or Val, were constructed by site-directedmutagenesis. The effects of the substitutions on the functionof tryptophan synthase were investigated by activity measurements,calorimetric measurements of association with the ßsubunit and steadystate kinetic analysis of catalysis. Althoughthe three Cys residues are located away from the apparentlyimportant parts for enzymatic activity, substitutions at position81 by Ser, Ala or Val caused decreases in the intrinsic activityof the subunit. Furthermore, Cys81Ser and Cys81Val reducedstimulation activities in the and ß reactions dueto formation of a complex with the ß subunit. Thelower stimulation activities of the mutant proteins were notcorrelated with their abilities to associate with the ßsubunit but were correlated with decreases in kcat. The presentresults suggest that position 81 plays an indirectly importantrole in the activity of the subunit itself and the mutual activationmechanism of the complex. 相似文献
6.
Stennicke Henning R.; Mortensen Uffe H.; Christensen Ulla; Remington S.James; Breddam Klaus 《Protein engineering, design & selection : PEDS》1994,7(7):911-916
Carboxypeptidase Y is a serine carboxypeptidase isolated fromSaccharomyces cerevisiae with a preference for Cterminal hydrophobicamino acid residues. In order to alter the inherent substratespecificity of CPD-Y into one for basic amino acid residuesin P'1, we have introduced Asp and/or Glu residues at a numberof selected positions within the Si binding site. Hie effectsof these substitutions on the substrate specificity, pH dependenceand protein stability have been evaluated. The results presentedhere demonstrate that it is possible to obtain significant changesin the substrate preference by introducing charged amino acidsinto the framework provided by an enzyme with a quite differentspecificity. The introduced acidic amino acid residues providea marked pH dependence of the (kcat/Km)FA-A-R-OH/(kcatm)FA-A-R-OHratio. The change in stability upon introduction of Asp/Gluresidues can be correlated to the difference in the mean buriedsurfac surface area between the substituted and the substitutingamino acid. Thus, the effects of acidic amino acid residueson the protein stability depend upon whether the introducedamino acid protrudes from the solvent accessible surface asdefined by the surrounding residues in the wild type enzymeor is submerged below. 相似文献
7.
Fox Ted; Mason Patrizia; Storer Andrew C.; Mort John S. 《Protein engineering, design & selection : PEDS》1995,8(1):53-57
Cysteine proteases of the papain family generally exhibit broadP1 specificity. A notable exception is papaya proteinase IV(PPIV), which only accepts Gly at this position. In all othercysteine proteases the S1 subsite residues 23 and 65 (papainnumbering) are absolutely conserved as Gly, while in PPIV theyare replaced by Glu and Arg, respectively. These differencesappear to underlie both PPIV specificity and its resistanceto inhibition by cystatins. To test this hypothesis, the equivalentresidues (Gly27 and Gly73) in the mammalian cysteine proteasecathepsin B were changed to Glu and Arg, respectively. Relativeto the wild-type enzyme, the Gly27Glu and Gly73Arg mutants showeda drastic reduction in activity with substrates containing aP1 Arg. In contrast, substrates having a Gly residue in P1 werehydrolyzed effectively. The double mutant (Gly27Glu:Gly73Arg)exhibited no detectable activity against any substrate studied.Inhibition of the Gly73Arg mutant by E-64 [1-(L-trans-epoxysuccinyl-L-leucylamino)-4-guanidinobutane]was found to be similar to that of the wild-type enzyme. Incontrast, inhibition by cystatin C exhibited a 20 000-fold reduction.These results demonstrate the dramatic influence of side chainsat sequence locations 27 and 73 on the S1 subsite specificityof cysteine proteases. 相似文献
8.
Pons Jaume; Planas Antoni; Querol Enrique 《Protein engineering, design & selection : PEDS》1995,8(9):939-945
Bacillus 1,3-1,4-ß-glucanases possess a highly conserveddisulfide bridge connecting a ß-strand with a solventexposedloop lying on top of the extended binding site cleft The contributionof the disulfide bond and of both individual cysteines (Cys61and Cys90) in the Bacillus licheniformis enzyme to stabilityand activity has been evaluated by protein engineering methods.Reduction of the disulfide bond has no effect on kinetic parameters,has only a minor effect on the activity-temperature profileat high temperatures, and destabilizes the protein by less than0.7 kcal/mol as measured by equilibrium urea denatu ration at37°C. Replacing either of the Cys residues with Ala destabilizesthe protein and lowers the specific activity. C90A retains 70%of wild-type (wt) activity (in terms of Vmax), whereas C61Aand the double mutant C61AC90A have 10% of wt Vmax. Alarger change in free energy of unfolding is seen by equilibriumurea denaturation for the C61A mutation (loop residue, 3.2 kcal/molrelative to reduced wt) as compared with the C90A mutation (ß-strandresidue, 1.8 kcal/mol relative to reduced wt), while the doublemutant C61AC90A is 0.8 kcal/mol less stable than thesingle C61A mutant. The effects on stability are interpretedas a result of the change in hydrophobic packing that occursupon removal of the sulfur atoms in the Cys to Ala mutations 相似文献
9.
Altschuh Daniele; Tessier Daniel C.; Vernet Thierry 《Protein engineering, design & selection : PEDS》1994,7(6):769-776
The two main catalytic residues Cys25 and Hisl59 of the monomericcysteine protease papain are located on different walls of acleft formed by two domains. This topology suggests a possiblerelationship between relative domain organization and catalyticmechanism. The effect on enzymatic parameters of structuralmodifications at various locations of the twodomain interfaceof papain was examined by individual or double replacementsby Ala of pairs of interacting residues. Most modificationshad no effect on enzyme activity. However, the enzyme's substrateturnover (kcat) decreased following simultaneous alterationof the two most conserved residues, forming an apolar contactlocated 15 Å away from the active site. The pH activityprofile of the double mutant was unchanged, indicating a conservedionization state of the active site thiolate-imidazolium ionpair. This state is strongly dependent on the distance separatingthe two residues, thus suggesting that the active site geometryhas not been significantly altered. Efficient enzymatic activityin papain requires more than a correct active site geometryand is influenced by domain packing properties in a region remotefrom the active site. 相似文献
10.
Lanio Thomas; Selent Ursel; Wenz Christian; Wende Wolfgang; Schulz Alexandra; Adiraj M.; Katti Seturam B.; Pingoud Alfred 《Protein engineering, design & selection : PEDS》1996,9(11):1005-1010
Synthetic oligodeoxynucleotides with single methyl phosphonate(mp) substitutions were used for an analysis of the contributionof phosphate contacts to the recognition of the cleavage siteby the restriction endonuclease EcoRV. Only in the last positionwithin the recognition sequence, is the methyl phosphonate substitutiontolerated by the enzyme. The wild-type enzyme cleaves the SPdiastereomer of the oligodeoxynucleotide GACGATATmpCGTC andthe unmodified sequence with equal rates, whereas the RP diastereomeris cleaved much more slowly. Inspection of the crystal structureof an EcoRVDNA complex revealed that the non-bridgingoxygen atoms of the phosphodiester bond between the T and Cbases are in hydrogen bonding distance of the hydroxyl groupof the amino acid Thr94. We therefore tried to engineer a variantof EcoRV that would prefer a methyl phosphonate linkage overa normal phosphodiester bond and produced mutants with aminoacid exchanges at position 94. One of them, Thr94Val, showsa dramatically reduced activity towards the unmodified DNA anddoes not accept the Rp diastereomer, but cleaves the SP diastereomerwith the same rate as wild-type EcoRV. Its selectivity, i.e.the ratio of cleavage rates determined for the unmodified andmodified substrates, differs by three orders of magnitude fromthat of the wild-type enzyme. 相似文献
11.
Me Robert; Plouffe Celine; Khouri Henry E.; Dupras Robert; Tessier Daniel C.; Vernet Thierry; Thomas David Y.; Storer Andrew C. 《Protein engineering, design & selection : PEDS》1991,4(3):307-311
A mutant of papain, where an inter-domain hydrogen bond betweenthe side chain hydroxyl group of a serine residue at position176 and the side chain carbonyl oxygen of a glutamine residueat position 19 has been removed by site-directed mutagenesis,has been produced and characterized kinetically. The mutationof Ser176 to an alanine has only a small effect on the kineticparameters, the kcat/Km for hydrolysis of CBZ-Phe-Arg-MCA bythe Serl76Ala enzyme being of 8.1 x 104 /M/s compared with 1.2x 105 /M/s for papain. Serine 176 is therefore not essentialfor the catalytic functioning of papain, even though this residueis conserved in all cysteine proteases sequenced. The pH-activityprofiles were shown to be narrower in the mutant enzyme by upto 1 pH unit at high ionic strength. This result is interpretedto indicate that replacing Ser 176 by an alanine destabilizesthe thiolateimidazolium form of the catalytic site Cys25-Hisl59residues of papain. Possible explanations for that effect aregiven and the role of a serine residue at position 176 in papainis discussed. 相似文献
12.
Using the well-characterized antibody McPC603 as a model, wehad found that the Fv fragment can be isolated from Escherichiacoli as a functional protein in good yields, whereas the amountof the correctly folded Fab fragment of the same antibody producedunder identical conditions is significantly lower. In this paper,we analyse the reasons for this difference. We found that avariety of signal sequences function in the secretion of theisolated chains of the Fab fragment or in the co-secretion ofboth chains in E.coli. The low yield of functional Fab fragmentis not caused by inefficient expression or secretion in E.coli,but by inefficient folding and/or assembly in the periplasm.We compared the folding yields for the Fv and the Fab fragmentin the periplasm under various conditions. Several diagnosticframework variants were constructed and their folding yieldsmeasured. The results show that substitutions affecting cis-prolineresidues and those affecting various disulphide bonds in theprotein are by themselves insufficient to dramatically changethe partitioning of the folding pathway to the native structure,and the cause must lie in a facile aggregation of folding intermediatescommon to all structural variants. However, all structural variantscould be obtained in native form, demonstrating the generalutility of the secretory expression strategy. 相似文献
13.
Taylor Mark A.J.; Baker Kenneth C.; Connerton Ian F.; Cummings Nicola J.; Harris Gillian W.; Henderson Ian M.J.; Jones Sean T.; Pickersgill Richard W.; Sumner Ian G.; Warwicker James; Goodenough Peter W. 《Protein engineering, design & selection : PEDS》1994,7(10):1267-1276
The role of electrostatic interactions between the ionizableAsp158 and the active site thiolate-imidazolium ion pair ofsome cysteine proteinases has been the subject of controversyfor some time. This study reports the expression of wild typeprocaricain and Asp158Glu, Asp158Asn and Asp158Ala mutants fromEscherichia coli. Purification of autocatalytically maturedenzymes yielded sufficient fully active material for pH (kcat/Km)profiles to be obtained. Use of both uncharged and charged substratesallowed the effects of different reactive enzyme species tobe separated from the complications of electrostatic effectsbetween enzyme and substrate. At least three ionizations aredetectable in the acid limb of wild type caricain and the Gluand Asn mutants. Only two pKa, values, however, are detectablein the acid limb using the Ala mutant. Comparison of pH activityprofiles shows that whilst an ionizable residue at position158 is not essential for the formation of the thiolate-imidazoliumion pair, it does form a substantial part of the electrostaticfield responsible for increased catalytic competence. Changingthe position of this ionizable group in any way reduces activity.Complete removal of the charged group reduces catalytic competenceeven further. This work indicates that hydronations distantto the active site are contributing to the electrostatic effectsleading to multiple active ionization states of the enzyme. 相似文献
14.
Rat aldolase C cDNA was inserted in an Escherichia coli expressionvector to construct the rat aldolase C expression plasmid, pRAC42.This plasmid produces active rat aldolase C in the transfectedE.coli host cells. The characteristics of the purified enzyme,e.g. mol. wt, electrophoretic mobilities and kinetic parameters,are indistinguishable from those of authentic rat brain aldolaseC. Three different tetrameric hybrid forms, C3A, C2A2 and CA3,in addition to C4 and A4, were found to be produced in the hostcell when E.coli was co-transfected with expression plasmidsfor rat aldolase C and for human aldolase A. Similarly, thehybrid forms, C3B, C2B2 and CB3, in addition to C4 and B4, werealso produced in the cells when co-transfected with the plasmidsfor rat aldolase C and for human aldolase B. 相似文献
15.
Park Young-Nam; Aikawa Jun-ichi; Nishiyama Makoto; Horinouchi Sueharu; Beppu Teruhiko 《Protein engineering, design & selection : PEDS》1996,9(10):869-875
Residue 75 on the flap, a beta hairpin loop that partially coversthe active site cleft, is tyrosine in most members of the asparticproteinase family. Site-directed mutagenesis was carried outto investigate the functional role of this residue in Rhizomucorpusilus pepsin, an aspartic proteinase with high milk-clottingactivity produced by the fungus Rhizomucor pusillus. A set ofmutated enzymes with replacement of the amino acid at position75 by 17 other amino acid residues except for His and Gly wasconstructed and their enzymatic properties were examined. Strongactivity, higher than that of the wild-type enzyme, was foundin the mutant with asparagine (Tyr75Asn), while weak but distinctactivity was observed in Tyr75Phe. All the other mutants showedmarkedly decreased or negligible activity, less than 1/1000of that of the wild-type enzyme. Kinetic analysis of Tyr75Asnusing a chromogenic synthetic oligopeptide as a substrate revealeda marked increase in kcat with slight change in Km, resultingin a 5.6-fold increase in kcat/km. When differential absorptionspectra upon addition of pepstatin, a specific inhibitor foraspartic proteinase, were compared between the wild-type andmutant enzymes, the wild-type enzyme and Tyr75Asn, showing strongactivity, had spectra with absorption maxima at 280, 287 and293 nm, whereas the others, showing decreased or negligibleactivity, had spectra with only two maxima at 282 and 288 nm.This suggests a different mode of the inhibitor binding in thelatter mutants. These observations suggest a crucial role ofthe residue at position 75 in enhancing the catalytic efficiencythrough affecting the mode of substrate-binding in the asparticproteinases. 相似文献
16.
Kuipers Oscar P.; Kerver Jana; van Meersbergen Joop; Vis Roel; Dijkman Ruud; Verheij Hubertus M.; de Haas Gerard H. 《Protein engineering, design & selection : PEDS》1990,3(7):599-603
Residue 31 of porcine pancreatic phospholipase A2 (PLA2) islocated at the entrance to the active site. To study the roleof residue 31 in PLA2, six mutant enzymes were produced by site-directedmutagenesis, replacing Leu by either Trp, Arg, Ala, Thr, Seror Gly. Direct binding studies indicated a three to six timesgreater affinity of the Trp31 PLA2 for both monomeric and micellarsubstrate analogs, relative to the wild-type enzyme. The otherfive mutants possess an unchanged affinity for monomers of theproduct analog n-decylphosphocholine and for micelles of thediacyl substrate analog rac-l,2-dioctanoylamino-dideoxy-glycero-3-phosphocholine.The affinities for micelles of the monoacyl product analog n-hexadecylphosphocholinewere decreased 920 times for these five mutants. Kineticstudies with monomeric substrates showed that the mutants haveVmax values which range between 15 and 70% relative to the wild-typeenzyme. The Vmax values for micelles of the zwitterionic substratel,2-dioctanoyl-sn-glycero-3-phosphocholine were lowered 350times. The Km values for the monomeric substrate and the kmvalues for the micellar substrate were hardly affected in thecase of five of the six mutants, but were considerably decreasedwhen Trp was present at position 31. The results of these investigationspoint to a versatile role for the residue at position 31: involvementin the binding and orientating of monomeric substrate (analogs),involvement in the binding of the enzyme to micellar substrateanalogs and possibly involvement in shielding the active sitefrom excess water. 相似文献
17.
Sloane David L.; Leung Regina; Barnett Jim; Craik Charles S.; Sigal Elliott 《Protein engineering, design & selection : PEDS》1995,8(3):275-282
Positional specificity determinants of human 15-lipoxygenasewere examined by site-directed mutagenesis and by kinetic analysisof the wild-type and variant enzymes. By comparing conserveddifferences among sequences of 12- and 15-lipoxygenases, a smallregion responsible for functional differences between 12- and15-lipoxygenases has been identified. Furthermore, the replacementof only two amino acids in 15-lipoxygenase (at 417 and 418 inthe primary sequence) by those found in certain 12-lipoxygenasesresults in an enzyme that has activity similar to 12-lipoxygenase.An examination of the activity of nine variants of lipoxygenasedemonstrated that the amino acid side-chain bulk and geometryof residues 417 and 418 are the key components of the positionalspecificity determinant of 15-lipoxygenase. Overexpression ofa variant (containing valines at positions 417 and 418) thatperforms predominantly 12-lipoxygenation was achieved in a baculovirus-insectcell culture system. This variant was purified to >90% homogeneityand its kinetics were compared with the wild-type 15-lipoxygenase.The variant enzyme has no change in its apparent KM for arachidonicacid and a minor(3-fold) change in its Vmax. For linoleic acid,the variant has no change in its KM and a 10-fold reductionin its Vmax, as expected for an enzyme performing predominantly12-lipoxygenation. The results are consistent with a model inwhich two amino acids of 15-lipoxygenase (isoleucine 417 andmethionine 418) constitute a structural element which contributesto the regiospecificity of the enzyme. Replacement of theseamino acids with those found in certain 12-lipoxygenases resultsin an enzyme which can bind arachidonic acid in a catalyticregister that prefers 12-lipoxygenation. 相似文献
18.
Kojima Shuichi; Miyoshi Katsunori; Miura kin-ichiro 《Protein engineering, design & selection : PEDS》1996,9(12):1241-1246
Cucurbita maxima trypsin inhibitor I (CMTI-I), a member of thesquash-type protease inhibitor family, is composed of 29 aminoacids and shows strong inhibition of trypsin by its compactstructure. To study the structurefunction relationshipof this inhibitor using protein engineering methods, we constructedan expression system for CMTI-I as a fused protein with porcineadenylate kinase (ADK). A Met residue was introduced into thejunction of ADK and CMTI-I to cleave the fusion protein withCNBr, whereas a Met at position 8 of authentic CMTI-I was replacedby Leu. Escherichia coli JM109 transformed with the constructedplasmid expressed the fused protein as an inclusion body. Aftercleavage of the expressed protein with CNBr, fully reduced speciesof CMTI-I were purified by reversed-phase HPLC and then oxidizedwith air by shaking. For efficient refolding of CMTI-I, we used50 mM NH4HCO3 (pH 7.8) containing 0.1% PEG 6000 at higher proteinconcentration. Strong inhibitory activity toward trypsin wasdetected only in the first of three HPLC peaks. The inhibitorconstant of CMTI-I thus obtained, in which Met8 was replacedby Leu, was 1.4x10-10 M. The effect of replacement of Met withLeu at position 8 was shown to be small by comparison of theinhibitor constant of authentic CMTI-III bearing Lys at position9 (8.9x10-11 M) with that of its mutant bearing Leu at position8 and Lys at position 9 (1.8x10-10 M). To investigate the roleof the well conserved hydrophobic residues of CMTI-I in itsinteraction with trypsin, CMTI-I mutants in which one or allof the four hydrophobic residues were replaced by Ala were prepared.The inhibitor constants of these mutants indicated that thosewith single replacements were 540 times less effectiveas trypsin inhibitors and that the quadruple mutant was 450times less effective, suggesting that the hydrophobic residuesin CMTI-I contribute to its tight binding with trypsin. However,each mutant was not converted to a temporary inhibitor. 相似文献
19.
Bakir Ufuk; Coutinho Pedro M.; Sullivan Patrick A.; Ford Clark; Reilly Peter J. 《Protein engineering, design & selection : PEDS》1993,6(8):939-946
Nine single amino add mutations in the active site of Aspergillusawamori glucoamylase were made by cassette mutagenesis to alterthe pH dependence of the enzyme and to determine possible functionsof the mutated residues. The Glul79-Asp mutation expressed inyeast led to a very large decrease in kcat but to no changein Km, verifying this residue's catalytic function. Aspl76-Gluand Glul80-Asp mutations affected Km a more than kcat, implyingthat Aspl76 and Glul80 are involved in substrate binding orstructural integrity. The Leul77-Asp mutation decreased kcatonly moderately, probably by changing the position of the generalacid catalytic group, and did not affect Km. The Trpl78-Aspmutation greatly decreased kcat while increasing Km, showingthe importance of Trpl78 in the active site. Vall81-Asp andAsnl82-Asp mutations changed kinetk values little, suggestingthat Vall81 and Asnl82 are of minor catalytic and structuralimportance. Finally, insertions of Asp or Gly between residues176 and 177 resulted in almost complete loss of activity, probablycaused by destruction of the active site structure. No largechanges in pH dependence occurred in those mutations where kineticvalues could be determined, in spite of the increase in mostcases of the total negative charge. Increases in activationenergy of maltoheptaose hydrolysis in most of the mutant glucoamylasessuggested cleavage of individual hydrogen bonds in enzyme-substratecomplexes. 相似文献
20.
Hewson Roger; Newbold Richard J.; Whitford David 《Protein engineering, design & selection : PEDS》1993,6(8):953-964
The DNA sequence of bovine microsomal cytochrome b5 has beenamplified from a liver cDNA library using a polymerase chainreaction. The amplified cDNA when cloned into plasmids thatsupport the high-level production of cytochrome bs in E.colileads to protein overexpression and results in cell coloniesbearing a strong red colouration. Using cassette mutagenesis,truncated versions of the cytochrome b5 cDNA have been madethat encode the first 90 amino acid residues (Ala1-Lys90), thefirst 104 amino acids (Ala1-Ser104) and the complete protein(Ala1-Asnl33). The location of the overexpressed cytochromebs within prokaryotic cells is dependent on the overall lengthof the protein. Expression of the Ala-Lys90 and Alal-SerlO4variants leads to a location in the cytoplasmic phase of thebacteria whereas the whole protein, Alal-Asnl33, is found withinthe bacterial membrane fraction. The last 30 residues of cytochromebs therefore contain all of the necessary information to insertthe protein into E.coli membranes. The solubility of the Alal-SerlO4variant permits the solution structure and stability of thisprotein to be measured using 1- and 2-D 1HNMR methods and electronicspectroscopy. 1-D NMR studies show that the chemical shiftsof the haem and haem ligand resonances of the Alal - Ser 104variant exhibit only very slight perturbations to their magneticmicroenvlronments when compared with the tryptic fragment offerricytochrome b5. These results indicate an arrangement ofresidues in the haem pocket that is very similar in both theAlal-Ser 104 variant and the tryptic fragment and by 2-D NMRit is shown that this similarity extends to the conformationsof the poly peptide backbone and side chains. Electronic spectroscopyof this variant shows absorbance maxima for the Soret peaksat 423 run (reduced) and 413 nm (oxidized). From absorbancespectra the relative thermal stabilities of the Alal-Ser 104variant and the tryptic fragment were measured. In the oxidizedstate the Ala1 - Ser104 variant denatures in a single cooperativetransition with a midpoint temperature (Tm of 73°C thatis significantly higher than that of tryptic ferricytochromebs. The reduced form of the protein shows increased transitiontemperatures (Tm 78°C) reflected in the values of Hm, Smand (G) of 420 kj/mol, 1096 J/mol/K and 12.38 kj/mol respectively,estimated for this variant. The increased stability of the Alal-SerlO4variant and other recombinant forms of cytochrome bs is correlatedwith the presence of additional residues at the N- and C-termini.The subtle differences in reactivity, stability and targetingbetween variant forms of cytochrome bs and the tryptic fragmentare discussed in terms of the overall structure of the protein. 相似文献