Molecular Diversity Sculpted by Fungal PKS–NRPS Hybrids

Fungal polyketide synthase–nonribosomal peptide synthetase (PKS–NRPS) hybrids manufacture a wide range of structurally diverse secondary metabolites that play an eminent role in the environment, as molecular tools and leads for therapeutic development. To date, a dozen PKS–NRPS megasynthetases can be linked to the corresponding secondary metabolites, which stand out because of their structural complexity. The diversity of their structures, biological activities, and biosynthetic routes are particularly intriguing considering the iterative use of the catalytic domains of the biosynthetic enzymes—implying an enigmatic biosynthetic code. This review provides an overview of the characterized fungal PKS–NRPS hybrids, their manifold functionalities, and the diversity of the resulting secondary metabolites, as well as molecular engineering attempts that highly improved the understanding of their cryptic programming.     

Hydroxy Acid Activation in Fungal Non-Ribosomal Peptide Synthesis Assessed by Site-Directed Mutagenesis

The fungal cyclodepsipeptides (CDPs) enniatin, beauvericin, bassianolide, and PF1022 consist of alternating N-methylated l -amino and d -hydroxy acids. They are synthesized by non-ribosomal peptide synthetases (NRPS). The amino acid and hydroxy acid substrates are activated by adenylation (A) domains. Although various A domains have been characterized thus giving insights into the mechanism of substrate conversion, little is known about the utilization of hydroxy acids in NRPSs. Therefore, we used homology modelling and molecular docking of the A₁ domain of enniatin synthetase (EnSyn) to gain insights into the mechanism of hydroxy acid activation. We introduced point mutations into the active site and used a photometric assay to study the substrate activation. The results suggest that the hydroxy acid is selected by interaction with backbone carbonyls rather than by a specific side chain. These insights enhance the understanding of non-amino acid substrate activation and could contribute to the engineering of depsipeptide synthetases.     

Expanding Substrate Promiscuity by Engineering a Novel Adenylating‐Methylating NRPS Bifunctional Enzyme

Nonribosomal peptides synthetases (NRPSs), which are multifunctional mega‐enzymes producing many biologically active metabolites, are ideal targets for enzyme engineering. NRPS adenylation domains play a critical role in selecting/activating the amino acids to be transferred to downstream NRPS domains in the biosynthesis of natural products. Both monofunctional and bifunctional A domains interrupted with an auxiliary domain are found in nature. Here, we show that a bifunctional interrupted A domain can be uninterrupted by deleting its methyltransferase auxiliary domain portion to make an active monofunctional enzyme. We also demonstrate that a portion of an auxiliary domain with almost no sequence identity to the original auxiliary domain can be insert into naturally interrupted A domain to develop a new active bifunctional A domain with increased substrate profile. This work shows promise for the creation of new interrupted A domains in engineered NRPS enzymes.     

Catalytic properties of Ni–B and Ni–P ultrafine materials

The ultrafine Ni–B and Ni–P amorphous alloy catalysts were prepared by the chemical reduction method. The catalysts were characterized with respect to ICP‐AES, XRD, nitrogen sorption, DSC, SEM, TEM and XPS. Nitrobenzene hydrogenation was used to compare their hydrogenation abilities. The different metalloids of boron and phosphorus bound to the nickel metal for the Ni–B and Ni–P catalysts result in the distinct different surface area, amorphous structure and hydrogenation activity of the catalysts. Ni–B had a larger surface area than Ni–P. The specific activity per surface area of Ni–P was greater than that of Ni–B. The different activities between the Ni–P and Ni–B can be attributed to the difference of the electron density on the nickel metal; boron donates electrons to the nickel metal and phosphorus accepts electrons from the nickel metal. The catalysts were easier to oxidize when they were exposed to air. This would result in the lower activity. However, the activity could be recovered in the reaction process due to the presence of hydrogen in the reaction system. © 2000 Society of Chemical Industry     

Catalytic activity of polymer–montmorillonite composites in chemical reactions

Polymer–clay composite material has been prepared by intercalation of polymeric ammonium salt onto the montmorillonite (Na–MMT) followed by grafted polymerization of hydroxyethyl methacrylate onto amine‐terminated poly(butadiene‐co‐acrylonitrile)–montmorillonite (ATBN–MMT) intercalate. The hydroxyl groups were modified to chloromethyl groups followed by conversion to onium salts, which are suitable as phase transfer catalysis. The catalytic activities of the supported catalysts were investigated in nucleophilic reactions of thiocyanate and cyanate ions with alkyl and aryl halides. The rates of the reactions have been investigated under different factors such as the nature and structure of the support, the amount of catalyst, the solvent, and the temperature. © 2006 Wiley Periodicals, Inc. J Appl Polym Sci 101: 1121–1129, 2006     

Tampering with Cell Division by Using Small‐Molecule Inhibitors of CDK–CKS Protein Interactions

Cyclin‐dependent kinases (CDKs) control many cellular processes and are considered important therapeutic targets. Large collections of inhibitors targeting CDK active sites have been discovered, but their use in chemical biology or drug development has been often hampered by their general lack of specificity. An alternative approach to develop more specific inhibitors is targeting protein interactions involving CDKs. CKS proteins interact with some CDKs and play important roles in cell division. We discovered two small‐molecule inhibitors of CDK–CKS interactions. They bind to CDK2, do not inhibit its enzymatic activity, inhibit the proliferation of tumor cell lines, induce an increase in G1 and/or S‐phase cell populations, and cause a decrease in CDK2, cyclin A, and p27^Kip1 levels. These molecules should help decipher the complex contributions of CDK–CKS complexes in the regulation of cell division, and they might present an interesting therapeutic potential.     

Structure–Activity Relationship Study of Spider Polyamine Toxins as Inhibitors of Ionotropic Glutamate Receptors

The spider polyamine toxins Joro spider toxin‐3 (JSTX‐3) and Nephila polyamine toxins‐1 and ‐8 (NPTX‐1 and NPTX‐8) are isolated from the venom of the orb‐weaver spider Nephila clavata (Joro spider). They share a high degree of structural resemblance, their aromatic head groups being the only difference, and were recently found to be very potent open‐channel blockers of ionotropic glutamate (iGlu) receptors. In this study we designed and synthesized a collection of 24 analogues of these toxins using a recently developed solid‐phase synthetic methodology. Systematic variation in two regions of the toxins and subsequent evaluation of biological activity at AMPA and NMDA subtypes of iGlu receptors provided succinct information on structure–activity relationships. In particular, one set of analogues were found to display exquisite selectivity and potency for AMPA receptors relative to the natural products. Thus, this systematic SAR study has provided new pharmacological tools for studies of iGlu receptors.     

A Chiral Bipyridyl Alcohol for Catalytic Enantioselective Nozaki–Hiyama–Kishi Allylation of Aldehydes and Ketones

A class of bipyridyl alcohol ligands has been developed. A catalyst synthesized using a chromium(II)‐ligand promotes the enantioselective Nozaki–Hiyama–Kishi (NHK) allylation of aldehydes and ketones with allylic halides. The allylation of various aromatic, α,β‐unsaturated, and aliphatic aldehydes and ketones produces the desired homoallylic alcohols in satisfactory yields (up to 98%) and high enantioselectivities (up to 99% ee). The present method can be applied widely and affords an efficient means of obtaining chiral homoallylic alcohols.

     

Preparation and properties of a siloxane‐containing 2‐vinylpyridine–styrene–butadiene copolymer with water glass

A siloxane‐containing 2‐vinylpyridine–styrene–butadiene copolymer (PSBR/WG) was prepared from a 2‐vinylpyridine–styrene–butadiene copolymer (PSBR) latex and water glass. The water glass was added slowly, with stirring, to the PSBR latex. The latex mixture was stirred for 3 h at room temperature, and then, it was coagulated with 1N sulfuric acid producing a sulfate of PSBR with siloxane. The physical properties, such as the filling and stiffening effects of the hybrid polymer, and the vulcanizates were improved. An important advantage of this system is that it is possible to prepare the hybrid polymer simply, and the sodium ions formed in the reaction can also be easily removed. © 2005 Wiley Periodicals, Inc. J Appl Polym Sci 99: 891–899, 2006     

Design,Synthesis and Structure–Activity Relationships Studies on the D Ring of the Natural Product Triptolide

Triptolide is a diterpene triepoxide natural product isolated from Tripterygium wilfordii Hook F, a traditional Chinese medicinal herb. Triptolide has previously been shown to possess antitumor, anti‐inflammatory, immunosuppressive, and antifertility activities. Earlier reports suggested that the five‐membered unsaturated lactone ring (D ring) is essential for potent cytotoxicity, however, to the best of our knowledge, systematic structure–activity relationship studies have not yet been reported. Here, four types of D ring‐modified triptolide analogues were designed, synthesized and evaluated against human ovarian (SKOV‐3) and prostate (PC‐3) carcinoma cell lines. The results suggest that the D ring is essential to potency, however it can be modified, for example to C18 hydrogen bond acceptor and/or donor furan ring analogues, without complete loss of cytotoxic activity. Interestingly, evaluation of the key series of C19 analogues showed that this site is exquisitely sensitive to polarity. Together, these results will guide further optimization of this natural product lead compound for the development of potent and potentially clinically useful triptolide analogues.     

A Catalytic Michael/Horner–Wadsworth–Emmons Cascade Reaction for Enantioselective Synthesis of Thiochromenes

A catalytic enantioselective sulfa‐Michael/Horner–Wadsworth–Emmons reaction cascade has been developed, taking advantage of phosphonate as an electrophilic activator and a traceless binding site. Using a chiral bifunctional urea derivative as the catalyst, a variety of aryl and heteroaryl substituted thiochromenes was obtained in excellent yield with a high level of enantioselectivity.     

Biosynthetic and Functional Color–Scent Associations in Flowers of Papaver nudicaule and Their Impact on Pollinators

Despite increasing evidence for biosynthetic connections between flower pigments and volatile compounds, examples of such relationships in polymorphic plant species remains limited. Herein, color–scent associations in flowers from Papaver nudicaule (Papaveraceae) have been investigated. The spectral reflectance and scent composition of flowers of four color cultivars was determined. We found that pigments and volatiles occur in specific combinations in flowers of P. nudicaule. The presence of indole in the bouquets is strongly associated with the occurrence of yellow pigments called nudicaulins, for which indole is one of the final biosynthetic precursors. Whereas yellow flowers emit an excess of indole, orange flowers consume it during nudicaulin production and lack the substance in their bouquet. By using the honeybee, Apis mellifera, evaluations were made on how color and scent affect the discrimination of these flowers by pollinators. Honeybees were able to discriminate artificial odor mixtures resembling those of the natural flower odors. Bees trained with stimuli combining colors and odors showed an improved discrimination performance. The results indicate that the indole moiety of nudicaulins and emitted indole might be products of the same biochemical pathway. We propose that conserved pathways account for the evolution of color–scent associations in P. nudicaule and that these associations positively affect flower constancy of pollinators.     

Catalytic synthesis of chalcone and flavanone using Zn–Al hydrotalcite adhere ionic liquid

The Claisen–Schmidt condensation of 2′-hydroxy acetophenone and benzaldehyde to chalcone and flavanone show that calcined Zn–Al (6) hydrotalcite is active for this synthesis. Coating of ionic liquid ‘1-(tri-ethoxy-silyl-propyl)-3-methyl-imidazolium chloride’ on Zn–Al hydrotalcites was accomplished employing incipient wetness process and on NaY, NaX, MK-5 and silica gel employing co-condensation methodology. Impregnated IL on calcined Zn–Al (6) catalysts were characterized by XRD, SEM, BET, ¹³C and ²⁷Al NMR analysis and the activity of these catalysts were investigated for chalcone and flavanone synthesis. ²⁷Al CP MAS NMR technique was used to show that interaction of IL with hydrotalcite modifies the acid–base sites and is responsible for enhancement of catalyst activity. Several aromatic aldehydes were screened to assess the general applicability of the system.     

Convective condensation in a stator–rotor–stator spinning disc reactor

Centrifugal intensification of condensation heat transfer in the rotor–stator cavities of a stator–rotor–stator spinning disc reactor (srs‐SDR) is studied, as a function of rotational velocity ω, volumetric throughflow rate , and average temperature driving force . For the current range of ω, heat transfer from the vapor bubbles to the condensate liquid is limiting, due to a relatively low gas–liquid interfacial area a_GL. For rad s^?1, a strong increase of a_GL, results in increasing the reactor‐average condensation heat transfer coefficient h_c from 1600 to 5600 W m^?2 K^?1, for condensation of pure dichloromethane vapor. Condensation heat transfer in the srs‐SDR is enhanced by rotation, independent of the vapor velocity. The intensified condensation comes at the cost of relatively high energy dissipation rates, indicating condensation in the srs‐SDR is more suited as a means to supply heat (e.g. in an intensified reactor‐heat exchanger), rather than for bulk cooling purposes. © 2016 American Institute of Chemical Engineers AIChE J, 62: 3784–3796, 2016     

Alkyl Formate Ester Synthesis by a Fungal Baeyer–Villiger Monooxygenase

We investigated Baeyer–Villiger monooxygenase (BVMO)‐mediated synthesis of alkyl formate esters, which are important flavor and fragrance products. A recombinant fungal BVMO from Aspergillus flavus was found to transform a selection of aliphatic aldehydes into alkyl formates with high regioselectivity. Near complete conversion of 10 mm octanal was achieved within 8 h with a regiomeric excess of ～80 %. Substrate concentration was found to affect specific activity and regioselectivity of the BVMO, as well as the rate of product autohydrolysis to the primary alcohol. More than 80 % conversion of 50 mm octanal was reached after 72 h (TTN nearly 20 000). Biotransformation on a 200 mL scale under unoptimized conditions gave a space‐time yield (STY) of 4.2 g L^?1 d^?1 (3.4 g L^?1 d^?1 extracted product).     

Stabilized dispersions of titania nanoparticles via a sol–gel process and applications in UV‐curable hybrid systems

Organic–inorganic hybrid UV‐curable coatings were synthesized through blending UV‐curable components and stabilized titania sol prepared via a sol–gel process of tetrabutyl titanate (TBT) with three different stabilizers, acetylacetone (Acac), isopropyl tri(dioctyl)pyrophosphato titanate coupling agent (TTPO) and a polymerizable organic phosphoric acid (MAP). The size and the dispersion of titania particle in the UV‐cured organic matrix were dominated by the properties of these stabilizers. A cured hybrid film with titania particle size around 20 nm was obtained when TTPO was utilized as protection agent for the sol. It is interesting that the hardness and flexibility of the photocured hybrid films were improved simultaneously, in contrast to results with neat organic UV‐curable formulations. Copyright © 2006 Society of Chemical Industry     

Discovery and Biosynthesis of Ureidopeptide Natural Products Macrocyclized via Indole N-acylation in Marine Microbulbifer spp. Bacteria

Commensal bacteria associated with marine invertebrates are underappreciated sources of chemically novel natural products. Using mass spectrometry, we had previously detected the presence of peptidic natural products in obligate marine bacteria of the genus Microbulbifer cultured from marine sponges. In this report, the isolation and structural characterization of a panel of ureidohexapeptide natural products, termed the bulbiferamides, from Microbulbifer strains is reported wherein the tryptophan side chain indole participates in a macrocyclizing peptide bond formation. Genome sequencing identifies biosynthetic gene clusters encoding production of the bulbiferamides and implicates the involvement of a thioesterase in the indolic macrocycle formation. The structural diversity and widespread presence of bulbiferamides in commensal microbiomes of marine invertebrates point toward a possible ecological role for these natural products.     

Synthesis and thermal property of boron–silicon– acetylene hybrid polymer

Inorganic–organic boron–silicon–acetylene hybrid polymer (PABS) was prepared by the polycondensation reaction between phenylboric acid and diphenyldichlorosilane and then terminated by phenylacetylene. The structure was characterized by using FTIR, ¹³C‐NMR, ¹H‐NMR, and GPC. PABS was a kind of resin exhibited high viscous at room temperature and good solubility in common organic solvents. The thermal and oxidative properties were evaluated by DSC and TGA. Exothermal peak at 370°C observed by DSC was attributed to reaction of the acetylene units. PABS showed excellent thermal and oxidative stability, and TGA exhibited the temperature of 5% weight loss (Td₅) was 625°C and char yield at 900°C was 90.0% in nitrogen. Surprisingly, both Td₅ and char yield at 900°C showed slightly increase in air, which was 638°C and 90.9%, respectively. © 2010 Wiley Periodicals, Inc. J Appl Polym Sci, 2011     

Morphology of Organic–Inorganic Hybrid Composites in Thin Films as Multichip Packaging Material

Silica–polyimide hybrid composites were prepared via a sol–gel process and thermal imidization. Two different types of soluble precursors, poly(amic acid) (PAA) and poly(amic diethyl ester) (ES), chemically convertible to poly(p-phenylene biphenyltetracarboximide), were used as organic polymer matrix component, and tetraethoxysilane (TEOS), convertible to silica, as the inorganic component. The structure of composites prepared as thin films was investigated by means of small-angle X-ray scattering, scanning electron microscopy and atomic force microscopy. Nanometre-scale composites were successfully obtained for ≤30wt% TEOS-loaded mixtures with ES and PAA. It was considered from the microstructural investigation that the composite films based on ES were not significantly affected by the inorganic particles generated, maintaining the structure of the homopolyimide, while those based on PAA did not preserve the structure due to the nanoparticles grown in situ during the sol–gel process. © 1997 SCI.