Dihydroimidazophenanthridinium (DIP)-based DNA binding agents with tuneable structures and biological activity

We have synthesised a library of dihydroimidazophenanthridinium cations (DIPs) with large structural diversity (1-29) using a "one-pot" approach. The DNA binding constants of DIPs range from 2x10(4) to 1.3x10(5) M(-1), and the free energies for binding range from -5.9 to -6.40 kcal mol(-1). Viscosity measurements demonstrated that the binding of the compounds caused DNA lengthening, thus signifying binding by intercalation. The cytotoxicities of the compounds were determined by tetrazolium dye-based microtitration assays and showed a large range of values (0.09-11.7 microM). Preliminary molecular modelling studies of the DNA-DIP interactions suggested that the DIP moieties can interact with DNA by intercalation, and some R groups might facilitate binding by minor-groove binding. The results provide insight into how to design biologically active DNA binding agents that can interact in these ways.     

Functional micro/nanostructures: simple synthesis and application in sensors, fuel cells, and gene delivery

In order to develop new, high technology devices for a variety of applications, researchers would like to better control the structure and function of micro/nanomaterials through an understanding of the role of size, shape, architecture, composition, hybridization, molecular engineering, assembly, and microstructure. However, researchers continue to face great challenges in the construction of well-defined micro/nanomaterials with diverse morphologies. At the same time, the research interface where micro/nanomaterials meet electrochemistry, analytical chemistry, biomedicine, and other fields provides rich opportunities to reveal new chemical, physical, and biological properties of micro/nanomaterials and to uncover many new functions and applications of these materials. In this Account, we describe our recent progress in the construction of novel inorganic and polymer nanostructures formed through different simple strategies. Our synthetic strategies include wet-chemical and electrochemical methods for the controlled production of inorganic and polymer nanomaterials with well-defined morphologies. These methods are both facile and reliable, allowing us to produce high-quality micro/nanostructures, such as nanoplates, micro/nanoflowers, monodisperse micro/nanoparticles, nanowires, nanobelts, and polyhedron and even diverse hybrid structures. We implemented a series of approaches to address the challenges in the preparation of new functional micro/nanomaterials for a variety of important applications This Account also highlights new or enhanced applications of certain micro/nanomaterials in sensing applications. We singled out analytical techniques that take advantage of particular properties of micro/nanomaterials. Then by rationally tailoring experimental parameters, we readily and selectively obtained different types of micro/nanomaterials with novel morphologies with high performance in applications such as electrochemical sensors, electrochemiluminescent sensors, gene delivery agents, and fuel cell catalysts. We expect that micro/nanomaterials with unique structural characteristics, properties, and functions will attract increasing research interest and will lead to new opportunities in various fields of research.     

Synthesis of small molecules targeting multiple DNA structures using click chemistry

The ability of small molecules to target DNA forms the basis of many clinically used antitumour agents. This study examines the effects of novel 9-aminoacridine carboxamides, synthesised by click chemistry based upon the reactions of either 9-(2-azidoethyl)amino or 9-propargylaminoacridine compounds, on various types of DNA tertiary structures. This gave either monomeric or dimeric compounds, the dimeric derivatives being the first unsymmetrical acridine dimers to be described. The compounds were assayed for duplex DNA, quadruplex DNA and four-way junction DNA binding. Their antiproliferative activity in the Human promyelocytic leukaemia cell line, HL60, was also assessed. Although for some of the compounds, notably the acridine 4-carboxamides, activity correlated with DNA binding affinity, for others it did not, with the rigidly linked dimers in particular showing a complicated relationship between 3- and 4-carboxamide structure and biological activity. The monomeric 3-carboxamides were more effective at stabilising G-quadruplex structures and also gave more hits in the four-way junction stabilisation assay. There is clear evidence from the binding of the 3-carboxamides that these compounds destabilise the open X form of the junction at lower concentrations and stabilise the X-stacked at higher concentrations. This might have implications for the biological activity of these compounds against proteins that bind to the Holliday junction (HJ).     

Interactions of the Multidrug Resistance Modulators Tariquidar and Elacridar and their Analogues with P‐glycoprotein

Tariquidar and elacridar are among the most potent inhibitors of the multidrug resistance transporter P‐glycoprotein (P‐gp), but how they interact with the protein is yet unknown. In this work, we describe a possible way in which these inhibitors interact with P‐gp. We rely on structure–activity relationship analysis of a small group of tariquidar and elacridar analogues that was purposefully selected, designed, and tested. Structural modifications of the compounds relate to the presence or absence of functional groups in the tariquidar and elacridar scaffolds. The activity of the compounds was evaluated by their effects on the accumulation of P‐gp substrates rhodamine 123 and Hoechst 33342 in resistant tumor cells. The data allow estimation of the ability of the compounds to interact with the experimentally proposed R‐ and H‐sites to which rhodamine 123 and Hoechst 33342 bind, respectively. Using an inward‐facing homology model of human P‐gp based on the crystallographic structure of mouse P‐gp, we demonstrate that these binding sites may overlap with the binding sites of the QZ59 ligands co‐crystallized with mouse P‐gp. Based on this SAR analysis, and using flexible alignment and docking, we propose possible binding modes for tariquidar and elacridar. Our results suggest the possibility for the studied compounds to bind to sites that coincide or overlap with the binding sites of rhodamine 123 and Hoechst 33342. These results contribute to further understanding of structure–function relationships of P‐gp and can help in the design of selective and potent P‐gp inhibitors with potential clinical use.     

Recent Development of Pyrimidine-Containing Antimicrobial Agents

Multidrug-resistant bacterial infections have become an important cause of clinical death in the twenty-first century. Much effort has been made to overcome this challenge. The discovery of novel antimicrobial compounds, as well as the rational use of antibacterial drugs with different structure types and mechanisms, is helping to deal with bacterial resistance. Currently, pyrimidine-containing agents are the major areas of new antibacterial drug discovery. Given their good activities and diverse mechanisms of action, many pyrimidine-containing heterocyclic compounds have become the focus of interest for many scientists. In addition, pyrimidine structure is an important part of many endogenous substances, which is an advantage that allows pyrimidine derivatives to interact with genetic materials, enzymes and other biopolymeric substances in the cell. Scientists have focused on the discovery and structural optimization of pyrimidine derivatives, which has resulted in the discovery of many novel pyrimidine derivatives with intriguing profiles. Herein we summarize the therapeutic potentials of pyrimidine compounds that are promising for antimicrobial applications over the last decade. In particular, the relationships between the structures of modified pyrimidines and their antimicrobial activity are systematically discussed.     

G-quadruplex recognition by quinacridines: a SAR, NMR, and biological study

The synthesis of a novel group of quinacridine-based ligands (MMQs) is described along with an evaluation of their G-quadruplex binding properties. A set of biophysical assays was applied to characterize their interaction with DNA quadruplexes: FRET-melting experiments and equilibrium microdialysis were used to evaluate their quadruplex affinity and their ability to discriminate quadruplexes across a broad panel of DNA structures. All data collected support the proposed model of interaction of these compounds with G-quadruplexes, which is furthermore confirmed by a solution structure determined by 2D NMR experiments. Finally, the activity of the MMQ series against tumor cell growth is reported, and the data support the potential of quadruplex-interactive compounds for use in anticancer approaches.     

Polymeric vesicles: from drug carriers to nanoreactors and artificial organelles

One strategy in modern medicine is the development of new platforms that combine multifunctional compounds with stable, safe carriers in patient-oriented therapeutic strategies. The simultaneous detection and treatment of pathological events through interactions manipulated at the molecular level offer treatment strategies that can decrease side effects resulting from conventional therapeutic approaches. Several types of nanocarriers have been proposed for biomedical purposes, including inorganic nanoparticles, lipid aggregates, including liposomes, and synthetic polymeric systems, such as vesicles, micelles, or nanotubes. Polymeric vesicles--structures similar to lipid vesicles but created using synthetic block copolymers--represent an excellent candidate for new nanocarriers for medical applications. These structures are more stable than liposomes but retain their low immunogenicity. Significant efforts have been made to improve the size, membrane flexibility, and permeability of polymeric vesicles and to enhance their target specificity. The optimization of these properties will allow researchers to design smart compartments that can co-encapsulate sensitive molecules, such as RNA, enzymes, and proteins, and their membranes allow insertion of membrane proteins rather than simply serving as passive carriers. In this Account, we illustrate the advances that are shifting these molecular systems from simple polymeric carriers to smart-complex protein-polymer assemblies, such as nanoreactors or synthetic organelles. Polymeric vesicles generated by the self-assembly of amphiphilic copolymers (polymersomes) offer the advantage of simultaneous encapsulation of hydrophilic compounds in their aqueous cavities and the insertion of fragile, hydrophobic compounds in their membranes. This strategy has permitted us and others to design and develop new systems such as nanoreactors and artificial organelles in which active compounds are simultaneously protected and allowed to act in situ. In recent years, we have created a variety of multifunctional, proteinpolymersomes combinations for biomedical applications. The insertion of membrane proteins or biopores into the polymer membrane supported the activity of co-encapsulated enzymes that act in tandem inside the cavity or of combinations of drugs and imaging agents. Surface functionalization of these nanocarriers permitted specific targeting of the desired biological compartments. Polymeric vesicles alone are relatively easy to prepare and functionalize. Those features, along with their stability and multifunctionality, promote their use in the development of new theranostic strategies. The combination of polymer vesicles and biological entities will serve as tools to improve the observation and treatment of pathological events and the overall condition of the patient.     

Exploring Photoswitchable Binding Interactions with Small-Molecule- and Peptide-Based Inhibitors of Trypsin

The ability to photochemically activate a drug, both when and where needed, requires optimisation of the difference in biological activity between each isomeric state. As a step to this goal, we report small-molecule- and peptide-based inhibitors of the same protease—trypsin—to better understand how photoswitchable drugs interact with their biological target. The best peptidic inhibitor displayed a more than fivefold difference in inhibitory activity between isomeric states, whereas the best small-molecule inhibitor only showed a 3.4-fold difference. Docking and molecular modelling suggest this result is due to a large change in 3D structure in the key binding residues of the peptidic inhibitor upon isomerisation; this is not observed for the small-molecule inhibitor. Hence, we demonstrate that significant structural changes in critical binding motifs upon irradiation are essential for maximising the difference in biological activity between isomeric states. This is an important consideration in the design of future photoswitchable drugs for clinical applications.     

Rational Design,Synthesis, and DNA Binding Properties of Novel Sequence‐Selective Peptidyl Congeners of Ametantrone

Natural and synthetic compounds characterized by an anthraquinone nucleus represent an important class of anti‐neoplastic agents, the mechanism of action of which is related to intercalation into DNA. Ametantrone (AM) is a synthetic 9,10‐anthracenedione bearing two (hydroxyethylamino)ethylamino residues at positions 1 and 4; along with other anthraquinones and anthracyclines, it shares a polycyclic intercalating moiety and charged side chains that stabilize DNA binding. All these drugs elicit adverse side effects, which represent a challenge for antitumor chemotherapy. In the present work the structure of AM was augmented with appropriate groups that target well‐defined base pairs in the major groove. These should endow AM with DNA sequence selectivity. We describe the rationale for the synthesis and the evaluation of activity of a new series of compounds in which the planar anthraquinone is conjugated at positions 1 and 4 through the side chains of AM or other bioisosteric linkers to appropriate dipeptides. The designed novel AM derivatives were shown to selectively stabilize two oligonucleotide duplexes that both have a palindromic GC‐rich hexanucleotide core, but their stabilizing effects on a random DNA sequence was negligible. In the case of the most effective compound, the 1,4‐bis‐[Gly‐(L ‐Lys)] derivative of AM, the experimental results confirm the predictions of earlier theoretical computations. In contrast, AM had equal stabilizing effects on all three sequences and showed no preferential binding. This novel peptide derivative can be classified as a strong binder regarding the sequences that it selectively targets, possibly opening the exploitation of less cytotoxic conjugates of AM to the targeted treatment of oncological and viral diseases.     

纳滤膜材料研究进展

简单阐述了纳滤膜的特点与应用,综述了乙酸纤维类、芳香族聚酰胺类等常用有机高分子纳滤膜材料,天然高分子、聚电解质等新型有机高分子纳滤膜材料,无机纳滤膜材料以及无机-有机杂化复合纳滤膜材料的研究进展。分别列举了相应膜材料的典型膜,并从高通量、抗污染、耐有机溶剂与耐氯性等多角度对相应膜材料的结构特性、化学特性、膜制备技术与应用特点进行了对比分析与总结,最后对纳滤膜材料的发展趋势与应用前景作了预测与展望,指出特种高性能纳滤膜材料的开发与微观结构的调控和基于不同纳滤膜材料的结构与功能设计将成为今后一段时间内的研究热点。     

Ordered macroporous bimetallic nanostructures: design, characterization, and applications

Ordered porous metal nanomaterials have current and future potential applications, for example, as catalysts, as photonic crystals, as sensors, as porous electrodes, as substrates for surface-enhanced Raman scattering (SERS), in separation technology, and in other emerging nanotechnologies. Methods for creating such materials are commonly characterized as "templating", a technique that involves first the creation of a sacrificial template with a specific porous structure, followed by the filling of these pores with desired metal materials and finally the removal of the starting template, leaving behind a metal replica of the original template. From the viewpoint of practical applications, ordered metal nanostructures with hierarchical porosity, namely, macropores in combination with micropores or mesopores, are of particular interest because macropores allow large guest molecules to access and an efficient mass transport through the porous structures is enabled while the micropores or mesopores enhance the selectivity and the surface area of the metal nanostructures. For this objective, colloidal crystals (or artificial opals) consisting of three-dimensional (3D) long-range ordered arrays of silica or polymer microspheres are ideal starting templates. However, with respect to the colloidal crystal templating strategies for production of ordered porous metal nanostructures, there are two challenging questions for materials scientists: (1) how to uniformly and controllably fill the interstitial space of the colloidal crystal templates and (2) how to generate ordered composite metal nanostructures with hierarchical porosity. This Account reports on recent work in the development and applications of ordered macroporous bimetallic nanostructures in our laboratories. A series of strategies have been explored to address the challenges in colloidal crystal template techniques. By rationally tailoring experimental parameters, we could readily and selectively design different types of ordered bimetallic nanostructures with hierarchical porosity by using a general template technique. The applications of the resulting nanostructures in catalysis and as substrates for SERS are described. Taking the ordered porous Au/Pt nanostructures as examples for applications as catalysts, the experimental results show that both the ordered hollow Au/Pt nanostructure and the ordered macroporous Au/Pt nanostructure exhibit high catalytic ability due to their special structural characteristics, and their catalytic activity is component-dependent. As for SERS applications, primary experimental results show that these ordered macroporous Au/Ag nanostructured films are highly desirable for detection of DNA bases by the SERS technique in terms of a high Raman intensity enhancement, good stability, and reproducibility, suggesting that these nanostructures may find applications in the rapid detection of DNA and DNA fragments.     

Polymerization of MMA at the surface of inorganic submicron particles

Inorganic submicron particles, such as TiO₂, were modified with titanate coupling agents. The structure and stability of some titanates, both in solution and at the particle surface, were investigated by various methods. The modified titanium dioxide was dispersed in a solution of sodium dodecylsulphate (SDS) in water. The surfactant adsorbs at the now hydrophobic particle surface, thus creating a micellelike structure with an inorganic particle in the centre. In this system an emulsion polymerization of methyl methacrylate was carried out. Product formed at the particle surface is either physically bound by entanglement or chemically bound by covalent bonding to the titanates. In this way a core-shell morphology is obtained with an inorganic core and a polymer shell. The effects of several reaction parameters on the kinetics of the polymerization were studied. The encapsulated TiO₂ particles may offer interesting prospects in those applications where good coupling between polymer matrix and inorganic particles is necessary, such as latex paints and polymer composite materials.     

Recent Development of Benzimidazole‐Containing Antibacterial Agents

Clinically significant antibiotic resistance is one of the greatest challenges of the twenty‐first century. However, new antibacterial agents are currently being developed at a much slower pace than our growing need for such drugs. Given their diverse biological activities and clinical applications, many bioactive heterocyclic compounds containing a benzimidazole nucleus have been the focus of interest for many researchers. The benzimidazole nucleus is a structural isostere of naturally occurring nucleotides. This advantage allows benzimidazoles to readily interact with the various biopolymers found in living systems. In view of this situation, much attention has been given to the exploration of benzimidazole‐based antibacterial agents, leading to the discovery of many new chemical entities with intriguing profiles. In this minireview we summarize novel benzimidazole derivatives active against various bacterial strains. In particular, we outline the relationship between the structures of variously modified benzimidazoles and their antibacterial activity.     

Conformationally constrained PNA analogues: structural evolution toward DNA/RNA binding selectivity

Since its discovery 12 years ago, aminoethylglycyl peptide nucleic acid (aeg-PNA) has emerged as one of the successful DNA mimics for potential therapeutic and diagnostic applications. An important requisite for in vivo applications that has received inadequate attention is engineering PNA analogues for able discrimination between DNA and RNA as binding targets. Our approach toward this aim is based on structural preorganization of the backbone to hybridization-competent conformations to impart binding selectivity. This strategy has allowed us to design locked PNAs to achieve specific hybridization with DNA or RNA with aims to increase the binding strength without losing the binding specificity. This Account presents results of our rationale in design of different conformationally constrained PNA analogues, their synthesis, and evaluation of hybridization specificities.     

Recent Advances in Polymer Additive Engineering for Diagnostic and Therapeutic Hydrogels

Hydrogels are hydrophilic polymer materials that provide a wide range of physicochemical properties as well as are highly biocompatible. Biomedical researchers are adapting these materials for the ever-increasing range of design options and potential applications in diagnostics and therapeutics. Along with innovative hydrogel polymer backbone developments, designing polymer additives for these backbones has been a major contributor to the field, especially for expanding the functionality spectrum of hydrogels. For the past decade, researchers invented numerous hydrogel functionalities that emerge from the rational incorporation of additives such as nucleic acids, proteins, cells, and inorganic nanomaterials. Cases of successful commercialization of such functional hydrogels are being reported, thus driving more translational research with hydrogels. Among the many hydrogels, here we reviewed recently reported functional hydrogels incorporated with polymer additives. We focused on those that have potential in translational medicine applications which range from diagnostic sensors as well as assay and drug screening to therapeutic actuators as well as drug delivery and implant. We discussed the growing trend of facile point-of-care diagnostics and integrated smart platforms. Additionally, special emphasis was given to emerging bioinformatics functionalities stemming from the information technology field, such as DNA data storage and anti-counterfeiting strategies. We anticipate that these translational purpose-driven polymer additive research studies will continue to advance the field of functional hydrogel engineering.     

Piperazine,a Key Substructure for Antidepressants: Its Role in Developments and Structure-Activity Relationships

Depression is the single largest contributor to global disability with a huge economic and social burden on the world. There are a number of antidepressant drugs on the market, but treatment-resistant depression and relapse of depression in a large number of patients have increased problems for clinicians. One peculiarity observed in most of the marketed antidepressants is the presence of a piperazine substructure. Although piperazine is also used in the optimization of other pharmacological agents, it is almost extensively used for the development of novel antidepressants. One common understanding is that this is due to its favorable CNS pharmacokinetic profile; however, in the case of antidepressants, piperazine plays a much bigger role and is involved in specific binding conformations of these agents. Therefore, in this review, a critical analysis of the significance of the piperazine moiety in the development of antidepressants has been performed. An overview of current developments in the designing and synthesis of piperazine-based antidepressants (2015 onwards) along with SAR studies is also provided. The various piperazine-based therapeutic agents in early- or late-phase human testing for depression are also discussed. The preclinical compounds discussed in this review will help researchers understand how piperazine actually influences the design and development of novel antidepressant compounds. The SAR studies discussed will provide crucial clues about the structural features and optimizations required to enhance the efficacy and potency of piperazine-based antidepressants.     

含氟聚苯胺的合成及其特种功能修饰剂

含氟聚苯胺因其有大π键共轭的聚苯胺骨架结构、强电负性的含氟取代基团,而显示出优异的溶解性、碘掺杂后的导电性和敏感的生物催化性,是聚苯胺家族中很有发展前景的电活性聚合物。该文基于最新研究文献,总结了含氟聚苯胺的合成方法,探讨了含氟聚苯胺的特种修饰功能。着重论述了含氟聚苯胺作为特种功能修饰剂在生物燃料电池、葡萄糖酶生物传感器等领域的研究与应用。指出含氟聚苯胺在特殊环境中的稳定性、电催化增敏性、可再生性等方面都优于无机物和其他导电聚合物,是一种很有发展潜力的功能材料。引用文献17篇。     

Molecular and submolecular scale effects of comb‐copolymers on tri‐calcium silicate reactivity: Toward molecular design

The impact of organic compounds on the processing and reactivity of inorganic materials has been a source of inspiration for materials scientists for decades and continues to trigger novel and innovative applications in a broad range of disciplines. However, molecular design of such compounds to reach targeted properties remains challenging, particularly for reactive and multicomponent systems. This outstanding challenge is met here by combining a model cement, hosting different coupled reactions of dissolution, nucleation and growth, together with comb‐copolymers that offer large and well‐controlled variations of their molecular architecture. We show that silicate reactivity is affected by a combination of molecular and submolecular scale effects of these polymers. The first can be described by scaling laws from polymer physics, whereas the second involves specific chemical interactions. In particular, the ability of these polymers to hinder dissolution appears to be crucial, something for which strong experimental evidence is provided.     

Synthesis of macromolecular coupling agents and binders

Sizes of glass fibers used in composite materials include binders and coupling agents. Usually these types of compounds have a low molecular weight and present two identical reactive groups for binders and two different functions (namely, organic and inorganic groups) for the coupling agents. The aim of this paper was to describe the synthesis of macromolecular binders and coupling agents in order to perform the interphase region. These products appear as difunctional or polyfunctional compounds. Difunctional compounds were obtained by reaction between a telechelic polymer (prepared by anionic polymerization) and alkoxysilane or epoxy groups. Polyfunctional compounds were performed by hydrosilylation reactions between a polysiloxane containing hydrogenosilane functions and vinylsilane, and/or 1-allyloxy-2,3 epoxypropane.