Estimating northern peatland CO2 exchange from MODIS time series data

Studies using satellite sensor-derived data as input to models for CO₂ exchange show promising results for closed forest stands. There is a need for extending this approach to other land cover types, in order to carry out large-scale monitoring of CO₂ exchange. In this study, three years of eddy covariance data from two peatlands in Sweden were averaged for 16-day composite periods and related to data from the Moderate Resolution Imaging Spectroradiometer (MODIS) and modeled photosynthetic photon flux density (PPFD). Noise in the time series of MODIS 250 m vegetation indices was reduced by using double logistic curve fits. Smoothed normalized difference vegetation index (NDVI) showed saturation during summertime, and the enhanced vegetation index (EVI) generally gave better results in explaining gross primary productivity (GPP). The strong linear relationships found between GPP and the product of EVI and modeled PPFD (R² = 0.85 and 0.76) were only slightly stronger than for the product of EVI and MODIS daytime 1 km land surface temperature (LST) (R² = 0.84 and 0.71). One probable reason for these results is that several controls on GPP were related to both modeled PPFD and daytime LST. Since ecosystem respiration (ER) was largely explained by diurnal LST in exponential relationships (R² = 0.89 and 0.83), net ecosystem exchange (NEE) was directly related to diurnal LST in combination with the product of EVI and modeled PPFD in multiple exponential regressions (R² = 0.81 and 0.73). Even though the R² values were somewhat weaker for NEE, compared to GPP and ER, the RMSE values were much lower than if NEE would have been estimated as the sum of GPP and ER. The overall conclusion of this study is that regression models driven by satellite sensor-derived data and modeled PPFD can be used to estimate CO₂ fluxes in peatlands.     

Developing a continental-scale measure of gross primary production by combining MODIS and AmeriFlux data through Support Vector Machine approach

Remote sensing is a potentially powerful technology with which to extrapolate eddy covariance-based gross primary production (GPP) to continental scales. In support of this concept, we used meteorological and flux data from the AmeriFlux network and Support Vector Machine (SVM), an inductive machine learning technique, to develop and apply a predictive GPP model for the conterminous U.S. In the following four-step process, we first trained the SVM to predict flux-based GPP from 33 AmeriFlux sites between 2000 and 2003 using three remotely-sensed variables (land surface temperature, enhanced vegetation index (EVI), and land cover) and one ground-measured variable (incident shortwave radiation). Second, we evaluated model performance by predicting GPP for 24 available AmeriFlux sites in 2004. In this independent evaluation, the SVM predicted GPP with a root mean squared error (RMSE) of 1.87 gC/m²/day and an R² of 0.71. Based on annual total GPP at 15 AmeriFlux sites for which the number of 8-day averages in 2004 was no less than 67% (30 out of a possible 45), annual SVM GPP prediction error was 32.1% for non-forest ecosystems and 22.2% for forest ecosystems, while the standard Moderate Resolution Imaging Spectroradiometer GPP product (MOD17) had an error of 50.3% for non-forest ecosystems and 21.5% for forest ecosystems, suggesting that the regionally tuned SVM performed better than the standard global MOD17 GPP for non-forest ecosystems but had similar performance for forest ecosystems. The most important explanatory factor for GPP prediction was EVI, removal of which increased GPP RMSE by 0.85 gC/m²/day in a cross-validation experiment. Third, using the SVM driven by remote sensing data including incident shortwave radiation, we predicted 2004 conterminous U.S. GPP and found that results were consistent with expected spatial and temporal patterns. Finally, as an illustration of SVM GPP for ecological applications, we estimated maximum light use efficiency (e_max), one of the most important factors for standard light use efficiency models, for the conterminous U.S. by integrating the 2004 SVM GPP with the MOD17 GPP algorithm. We found that e_max varied from ∼ 0.86 gC/MJ in grasslands to ∼ 1.56 gC/MJ in deciduous forests, while MOD17 e_max was 0.68 gC/MJ for grasslands and 1.16 gC/MJ for deciduous forests, suggesting that refinements of MOD17 e_max may be beneficial.     

Exploring the potential of MODIS EVI for modeling gross primary production across African ecosystems

One of the most frequently applied methods for integrating controls on primary production through satellite data is the light use efficiency (LUE) approach, which links vegetation gross or net primary productivity (GPP or NPP) to remotely sensed estimates of absorbed photosynthetically active radiation (APAR). Eddy covariance towers provide continuous measurements of carbon flux, presenting an opportunity for evaluation of satellite estimates of GPP. Here we investigate relationships between eddy covariance estimated GPP, environmental variables derived from flux towers, Moderate Resolution Imaging Spectroradiometer (MODIS) enhanced vegetation index (EVI) and GPP across African savanna ecosystems. MODIS GPP was found to underestimate GPP at the majority of sites, particularly at sites in the Sahel. EVI was found to correlate well with estimated GPP on a site-by-site basis. Combining EVI with tower-measured PAR and evaporative fraction (EF, a measure of water sufficiency) improved the direct relationship between GPP and EVI at the majority of the sites. The slope of this relationship was strongly related to site peak leaf area index (LAI). These results are promising for the extension of GPP through the use of remote sensing data to a regional or even continental scale.     

The photochemical reflectance index (PRI) and the remote sensing of leaf, canopy and ecosystem radiation use efficiencies: A review and meta-analysis

Traditional remote sensing techniques allow the assessment of green plant biomass, and therefore plant photosynthetic capacity. However, detecting how much of this capacity is actually realized is a more challenging goal. Is it possible to remotely assess actual carbon fluxes? Can this be done at leaf, canopy and ecosystem scales and at different temporal scales? Different approaches can be used to answer these questions. Among them, the Photochemical Reflectance Index (PRI) derived from narrow-band spectroradiometers is a spectral index increasingly being used as an indicator of photosynthetic efficiency. We examined and synthesized the scientific literature on the relationships between PRI and several ecophysiological variables across a range of plant functional types and ecosystems at the leaf, canopy and ecosystem levels and at the daily and seasonal time scales. Our analysis shows that although the strength of these relationships varied across vegetation types, levels of organization and temporal scales, in most reviewed articles PRI was a good predictor of photosynthetic efficiency or related variables with performances at least as good as the widely used NDVI as indicator of green biomass. There are possible confounding factors related to the intensity of the physiological processes linked to the PRI signals, to the structure of the canopies and to the illumination and viewing angles that warrant further studies, and it is expected that the utility of PRI will vary with the ecosystem in question due to contrasting environmental constraints, evolutionary strategies, and radiation use efficiency (RUE; the ratio between carbon uptake and light absorbed by vegetation) variability. Clearly, more research comparing ecosystem responses is warranted. Additionally, like any 2-band index that is affected by multiple factors, the interpretation of PRI can be readily confounded by multiple environmental variables, and further work is needed to understand and constrain these effects. Despite these limitations, this review shows an emerging consistency of the RUE-PRI relationship that suggests a surprising degree of functional convergence of biochemical, physiological and structural components affecting leaf, canopy and ecosystem carbon uptake efficiencies. PRI accounted for 42%, 59% and 62% of the variability of RUE at the leaf, canopy and ecosystem respective levels in unique exponential relationships for all the vegetation types studied. It seems thus that by complementing the estimations of the fraction of photosynthetically active radiation intercepted by the vegetation (FPAR), estimated with NDVI-like indices, PRI enables improved assessment of carbon fluxes in leaves, canopies and many of the ecosystems of the world from ground, airborne and satellite sensors.     

Remote sensing of sunlight-induced chlorophyll fluorescence and reflectance of Scots pine in the boreal forest during spring recovery

A measurement campaign to assess the feasibility of remote sensing of sunlight-induced chlorophyll fluorescence (ChlF) from a coniferous canopy was conducted in a boreal forest study site (Finland). A Passive Multi-wavelength Fluorescence Detector (PMFD) sensor, developed in the LURE laboratory, was used to obtain simultaneous measurements of ChlF in the oxygen absorption bands, at 687 and 760 nm, and a reflectance index, the PRI (Physiological Reflectance Index), for a month during spring recovery. When these data were compared with active fluorescence measurements performed on needles they revealed the same trend. During sunny days fluorescence and reflectance signals were found to be strongly influenced by shadows associated with the canopy structure. Moreover, chlorophyll fluorescence variations induced by rapid light changes (due to transient cloud shadows) were found to respond more quickly and with larger amplitude under summer conditions compared to those obtained under cold acclimation conditions. In addition, ChlF at 760 nm was observed to increase with the chlorophyll content. During this campaign, the CO₂ assimilation was measured at the forest canopy level and was found remarkably well correlated with the PRI index.