Water content estimation from hyperspectral images and MODIS indexes in Southeastern Arizona

Hyperspectral water retrievals from AVIRIS data, equivalent water thickness (EWT), were compared to in situ leaf water content and LAI measurements at a semiarid site in southeastern Arizona. Retrievals of EWT showed good correlation with field canopy water content measurements. Statistical analysis suggested that EWT was significantly different among seven community types, from savanna to agriculture. Four band-ratio indexes (NDVI, EVI, NDWI, and NDII) were derived from MODIS showing strong spatial agreement between maps of AVIRIS EWT and MODIS indexes, and good statistical agreement for the range of habitats at the site. Temporal patterns of these four indexes in all vegetation communities except creosote bush and agriculture showed distinct seasonal patterns that responded to the timing and amount of precipitation. Moreover, these time series captured different ecological responses among the different vegetation communities.     

Combining vegetation index and model inversion methods for the extraction of key vegetation biophysical parameters using Terra and Aqua MODIS reflectance data

Accurate estimates of vegetation biophysical variables are valuable as input to models describing the exchange of carbon dioxide and energy between the land surface and the atmosphere and important for a wide range of applications related to vegetation monitoring, weather prediction, and climate change. The present study explores the benefits of combining vegetation index and physically based approaches for the spatial and temporal mapping of green leaf area index (LAI), total chlorophyll content (TC_ab), and total vegetation water content (VWC). A numerical optimization method was employed for the inversion of a canopy reflectance model using Terra and Aqua MODIS multi-spectral, multi-temporal, and multi-angle reflectance observations to aid the determination of vegetation-specific physiological and structural canopy parameters. Land cover and site-specific inversion modeling was applied to a restricted number of pixels to build multiple species- and environmentally dependent formulations relating the three biophysical properties of interest to a number of selected simpler spectral vegetation indices (VI). While inversions generally are computationally slow, the coupling with the simple and computationally efficient VI approach makes the combined retrieval scheme for LAI, TC_ab, and VWC suitable for large-scale mapping operations. In order to facilitate application of the canopy reflectance model to heterogeneous forested areas, a simple correction scheme was elaborated, which was found to improve forest LAI predictions significantly and also provided more realistic values of leaf chlorophyll contents.The inversion scheme was designed to enable biophysical parameter retrievals for land cover classes characterized by contrasting canopy architectures, leaf inclination angles, and leaf biochemical constituents without utilizing calibration measurements. Preliminary LAI validation results for the Island of Zealand, Denmark (57°N, 12°E) provided confidence in the approach with root mean square (RMS) deviations between estimates and in-situ measurements of 0.62, 0.46, and 0.63 for barley, wheat, and deciduous forest sites, respectively. Despite the independence on site-specific in-situ measurements, the RMS deviations of the automated approach are in the same range as those established in other studies employing field-based empirical calibration.Being completely automated and image-based and independent on extensive and impractical surface measurements, the retrieval scheme has potential for operational use and can quite easily be implemented for other regions. More validation studies are needed to evaluate the usefulness and limitations of the approach for other environments and species compositions.     

Leaf area index estimation with MODIS reflectance time series and model inversion during full rotations of Eucalyptus plantations

The leaf area index (LAI) of fast-growing Eucalyptus plantations is highly dynamic both seasonally and inter-annually, and is spatially variable depending on pedo-climatic conditions. LAI is very important in determining the carbon and water balance of a stand, but is difficult to measure during a complete stand rotation and at large scales. Remote-sensing methods allowing the retrieval of LAI time series with accuracy and precision are therefore necessary. Here, we tested two methods for LAI estimation from MODIS 250m resolution red and near-infrared (NIR) reflectance time series. The first method involved the inversion of a coupled model of leaf reflectance and transmittance (PROSPECT4), soil reflectance (SOILSPECT) and canopy radiative transfer (4SAIL2). Model parameters other than the LAI were either fixed to measured constant values, or allowed to vary seasonally and/or with stand age according to trends observed in field measurements. The LAI was assumed to vary throughout the rotation following a series of alternately increasing and decreasing sigmoid curves. The parameters of each sigmoid curve that allowed the best fit of simulated canopy reflectance to MODIS red and NIR reflectance data were obtained by minimization techniques. The second method was based on a linear relationship between the LAI and values of the GEneralized Soil Adjusted Vegetation Index (GESAVI), which was calibrated using destructive LAI measurements made at two seasons, on Eucalyptus stands of different ages and productivity levels. The ability of each approach to reproduce field-measured LAI values was assessed, and uncertainty on results and parameter sensitivities were examined. Both methods offered a good fit between measured and estimated LAI (R² = 0.80 and R² = 0.62 for model inversion and GESAVI-based methods, respectively), but the GESAVI-based method overestimated the LAI at young ages.     

Linking ecological information and radiative transfer models to estimate fuel moisture content in the Mediterranean region of Spain: Solving the ill-posed inverse problem

Live fuel moisture content (FMC) is a key factor required to evaluate fire risk and its operative and accurate estimation is essential for allocating pre-fire resources as a part of fire prevention. This paper presents an operative and accurate procedure to estimate FMC though MODIS (moderate resolution imaging spectrometer) data and simulation models. The new aspects of the method are its consideration of several ecological criteria to parameterize the models and consistently avoid simulating unrealistic spectra which might produce indetermination (ill-posed) problems when inverting the model. The methodology was operatively applicable to 12 shrubland plots located in different provinces of the Mediterranean region of Spain and tested with field data collected in those areas. The results showed that the proposed method efficiently tracks changes of FMC with average errors around 15%. However the model under-estimates FMC values higher than 135.68% since those situations were not included in the simulation scheme and the inversion precision is also dependent on an accurate estimation of LAI. These limitations will be overcome in future work mainly by including spectral signatures of vegetation with FMC values higher than 135.68% in the simulations, and by exploring new methods for LAI retrieval. Further efforts will also be devoted to extend this approach to other ecosystems.     

Estimating live fuel moisture content from remotely sensed reflectance

Fuel moisture content (FMC) is used in forest fire danger models to characterise the moisture status of the foliage. FMC expresses the amount of water in a leaf relative to the amount of dry matter and differs from measures of leaf water content which express the amount of water in a leaf relative to its area. FMC is related to both leaf water content and leaf dry matter content, and the relationships between FMC and remotely sensed reflectance will therefore be affected by variation in both leaf biophysical properties. This paper uses spectral reflectance data from the Leaf Optical Properties EXperiment (LOPEX) and modelled data from the Prospect leaf reflectance model to examine the relationships between FMC, leaf equivalent water thickness (EWT) and a range of spectral vegetation indices (VI) designed to estimate leaf and canopy water content. Significant correlations were found between FMC and all of the selected vegetation indices for both modelled and measured data, but statistically stronger relationships were found with leaf EWT; overall, the water index (WI) was found to be most strongly correlated with FMC. The accuracy of FMC estimation was very low when the global range of FMC was examined, but for a restricted range of 0-100%, FMC was estimated with a root-mean-square error (RMSE) of 15% in the model simulations and 51% with the measured data. The paper shows that the estimation of live FMC from remotely sensed vegetation indices is likely to be problematic when there is variability in both leaf water content and leaf dry matter content in the target leaves. Estimating FMC from remotely sensed data at the canopy level is likely to be further complicated by spatial and temporal variations in leaf area index (LAI). Further research is required to assess the potential of canopy reflectance model inversion to estimate live fuel moisture content where a priori information on vegetation properties may be used to constrain the inversion process.     

Multi-temporal vegetation canopy water content retrieval and interpretation using artificial neural networks for the continental USA

An inversion of linked radiative transfer models (RTM) through artificial neural networks (ANN) was applied to MODIS data to retrieve vegetation canopy water content (CWC). The estimates were calibrated and validated using water retrievals from AVIRIS data from study sites located around the United States that included a wide range of environmental conditions. The ANN algorithm showed good performance across different vegetation types, with high correlations and consistent determination coefficients. The approach outperformed a multiple linear regression approach used to independently retrieve the same variable. The calibrated algorithm was then applied at the MODIS 500 m scale to follow changes in CWC for the year 2005 across the continental United States, subdivided into three vegetation types (grassland, shrubland, and forest). The ANN estimates of CWC correlated well with rainfall, indicating a strong ecological response. The high correlations suggest that the inversion of RTM through an ANN provide a realistic basis for multi-temporal assessments of CWC over wide areas for continental and global studies.     

Inversion of a radiative transfer model for estimating vegetation LAI and chlorophyll in a heterogeneous grassland

Radiative transfer models have seldom been applied for studying heterogeneous grassland canopies. Here, the potential of radiative transfer modeling to predict LAI and leaf and canopy chlorophyll contents in a heterogeneous Mediterranean grassland is investigated. The widely used PROSAIL model was inverted with canopy spectral reflectance measurements by means of a look-up table (LUT). Canopy spectral measurements were acquired in the field using a GER 3700 spectroradiometer, along with simultaneous in situ measurements of LAI and leaf chlorophyll content. We tested the impact of using multiple solutions, stratification (according to species richness), and spectral subsetting on parameter retrieval. To assess the performance of the model inversion, the normalized RMSE and R² between independent in situ measurements and estimated parameters were used. Of the three investigated plant characteristics, canopy chlorophyll content was estimated with the highest accuracy (R² = 0.70, NRMSE = 0.18). Leaf chlorophyll content, on the other hand, could not be estimated with acceptable accuracy, while LAI was estimated with intermediate accuracy (R² = 0.59, NRMSE = 0.18). When only sample plots with up to two species were considered (n = 107), the estimation accuracy for all investigated variables (LAI, canopy chlorophyll content and leaf chlorophyll content) increased (NRMSE = 0.14, 0.16, 0.19, respectively). This shows the limits of the PROSAIL radiative transfer model in the case of very heterogeneous conditions. We also found that a carefully selected spectral subset contains sufficient information for a successful model inversion. Our results confirm the potential of model inversion for estimating vegetation biophysical parameters at the canopy scale in (moderately) heterogeneous grasslands using hyperspectral measurements.     

Needle chlorophyll content estimation through model inversion using hyperspectral data from boreal conifer forest canopies

Leaf chlorophyll content in coniferous forest canopies, a measure of stand condition, is the target of studies and models linking leaf reflectance and transmittance and canopy hyperspectral reflectance imagery. The viability of estimation of needle chlorophyll content from airborne hyperspectral optical data through inversion of linked leaf level and canopy level radiative transfer models is discussed in this paper. This study is focused on five sites of Jack Pine (Pinus banksiana Lamb.) in the Algoma Region (Canada), where field, laboratory and airborne data were collected in 1998 and 1999 campaigns. Airborne hyperspectral CASI data of 72 bands in the visible and near-infrared region and 2 m spatial resolution were collected from 20×20 m study sites of Jack Pine in 2 consecutive years. It was found that needle chlorophyll content could be estimated at the leaf level (r²=0.4) by inversion of the PROSPECT leaf model from needle reflectance and transmittance spectra collected with a special needle carrier apparatus coupled to the Li-Cor 1800 integrating sphere. The Jack Pine forest stands used for this study with LAI>2, and the high spatial resolution hyperspectral reflectance collected, allowed the use of the SPRINT canopy reflectance model coupled to PROSPECT for needle chlorophyll content estimation by model inversion. The optical index R750/R710 was used as the merit function in the numerical inversion to minimize the effect of shadows and LAI variation in the mean canopy reflectance from the 20×20 m plots. Estimates of needle pigment content from airborne hyperspectral reflectance using this linked leaf-canopy model inversion methodology showed an r²=0.4 and RMSE=8.1 μg/cm² when targeting sunlit crown pixels in Jack Pine sites with pigment content ranging between 26.8 and 56.8 μg/cm² (1570-3320 μg/g).     

Integration of MODIS data into a simple model for the spatial distributed simulation of soil water content and evapotranspiration

A precise simulation of soil water content (SWC) and actual evapotranspiration (ET_a) in a region or a catchment depends on the accuracy of the spatial data inputs. In this study, we developed a simple grid-based soil water balance model. In this model, remotely sensed vegetation data are used to estimate spatial distributions of daily SWC and ET_a rates. The model was validated by comparing simulated SWC with the measured by gravimetric method and time domain reflectometry (TDR) at an experimental test site located in Northeastern Germany in the time period 1993-1998. The index of agreement IA and the root-mean-square error obtained from the comparison of the TDR measurements to the simulated values ranged from 0.45 to 0.80 and from 0.029 to 0.061 cm³/cm³, respectively. The comparison of simulated ET_a rates to those measured by four large-scale lysimeters at another test site showed IA values above 0.87 and R² values higher than 0.59. For the regional application of the model, a method was developed to integrate the Moderate Resolution Imaging Spectrometer (MODIS) vegetation data into the model. The MODIS data used in our study consist of 16-day normalized difference vegetation index and 8-day leaf area index products. Regarding the spatial application of the model, our approach was tested in a catchment located in Northeastern Germany in 2001-2003. A sufficient correlation between daily discharge rates measured at two observation gauges in the catchment and the corresponding simulated discharge rates and also good correlations between the simulated ET_a rates and the MODIS-leaf area index values indicate that the model is an appropriate simulation tool at regional scale if the corresponding additional spatial databases regarding surface and soil properties are available.     

Sensitivity of spectral reflectance to variation in live fuel moisture content at leaf and canopy level

Wildland fires burn large areas of the earth's land surface annually, causing significant environmental damage and danger to human health. In order to mitigate the effects, and to better manage the incidence of such fires, fire behaviour models are used to predict, among other things, the likelihood of ignition, the rate of spread, and the intensity and duration of burning. A key input parameter to these models is the amount of water in the vegetation, described as the fuel moisture content (FMC). A number of studies have shown that vegetation indices (VI) calculated from red and NIR reflectances may be used to map spatial and temporal variation in FMC in a range of fire-prone environments, with varying degrees of success. Strong empirical relationships may be established between VI and FMC over grasslands, yet over shrublands and forests, the relationships are weaker. If FMC is to be estimated with greater accuracy and consistency than is currently achieved, it is necessary to fully understand the relative contribution that spatial and temporal variation in the various biophysical and geometrical variables make to reflectance variability at the leaf and canopy level.This paper uses a modelling approach to investigate the sensitivity of reflectance data at leaf and canopy level to variation in the biophysical variables that are used to compute FMC. At the leaf level, the results show that the sensitivity of reflectance to variation in leaf water and dry matter content, used to compute FMC, is greatest in the SWIR and NIR, respectively. Variation in FMC has no effect in the visible wavelengths. At the canopy level, the results show that the sensitivity of reflectance to variation in leaf water and dry matter content is heavily dependent upon the type of model used and the range of variation over which the variables are tested. In the longer wavelengths of the SWIR, the competing influence of variable leaf area index, fractional vegetation cover, and solar zenith angle is shown to be greater than that at the shorter wavelengths of the SWIR and NIR. Empirical relationships between the normalised difference water index (NDWI) and FMC are shown to be weaker than that with canopy water content. However, when the range of the variables under study is more limited, useful empirical relationships between FMC and remotely sensed VI may be established.     

Advances in estimation methods of vegetation water content based on optical remote sensing techniques

Quantitative estimation of vegetation water content(VWC) using optical remote sensing techniques is helpful in forest fire as-sessment,agricultural drought monitoring and crop yield estimation.This paper reviews the research advances of VWC retrieval using spectral reflectance,spectral water index and radiative transfer model(RTM) methods.It also evaluates the reli-ability of VWC estimation using spectral water index from the observation data and the RTM.Focusing on two main definitions of VWC—the fuel mois...     

Modeling seasonal changes in live fuel moisture and equivalent water thickness using a cumulative water balance index

Live fuel moisture, an important determinant of fire danger in Mediterranean ecosystems, exhibits seasonal changes in response to soil water availability. Both drought stress indices based on meteorological data and remote sensing indices based on vegetation water absorption can be used to monitor live fuel moisture. In this study, a cumulative water balance index (CWBI) for a time series spanning 1994-1997 and 1999-2001 was compared to field measured live fuel moisture and to equivalent water thickness (EWT) calculated from remote sensing data. A sigmoidal function was used to model the relationships between CWBI, live fuel moisture, and EWT. Both live fuel moisture and EWT reach minima at large CWBI deficits. Minimum and maximum live fuel moisture, minimum and maximum EWT, and the modeled inflection points of both live fuel moisture and EWT were found to vary with vegetation type. Modeled minimum and maximum EWT were also found to vary with vegetation biomass. Spatial variation in modeled EWT inflection points may be due to vegetation type and to local variation in soil moisture. Based on their temporal and spatial attributes, CWBI and EWT offer complimentary methods for monitoring live fuel moisture for fire danger assessment.     

Estimating crop chlorophyll content with hyperspectral vegetation indices and the hybrid inversion method

A hybrid inversion method was developed to estimate the leaf chlorophyll content (LCC) and canopy chlorophyll content (CCC) of crops. Fifty hyperspectral vegetation indices (VIs), such as the photochemical reflectance index (PRI) and canopy chlorophyll index (CCI), were compared to identify the appropriate VIs for crop LCC and CCC inversion. The hybrid inversion models were then generated from different modelling methods, including the curve-fitting and least squares support vector regression (LS-SVR) and random forest regression (RFR) algorithms, by using simulated Compact High Resolution Imaging Spectrometer (CHRIS) datasets that were generated by a radiative transfer model. Finally, the remote-sensing mapping of a CHRIS image was completed to test the inversion accuracy. The results showed that the remote-sensing mapping of the CHRIS image yielded an accuracy of R² = 0.77 and normalized root mean squared error (NRMSE) = 17.34% for the CCC inversion, and an accuracy of only R² = 0.33 and NRMSE = 26.03% for LCC inversion, which indicates that the remote-sensing technique was more appropriate for obtaining chlorophyll content at the canopy scale (CCC) than at the leaf scale (LCC). The estimated results of various VIs and algorithms suggested that the PRI and CCI were the optimal VIs for LCC and CCC inversion, respectively, and RFR was the optimal method for modelling.     

Generation of dense time series synthetic Landsat data through data blending with MODIS using a spatial and temporal adaptive reflectance fusion model

Landsat imagery with a 30 m spatial resolution is well suited for characterizing landscape-level forest structure and dynamics. While Landsat images have advantageous spatial and spectral characteristics for describing vegetation properties, the Landsat sensor's revisit rate, or the temporal resolution of the data, is 16 days. When considering that cloud cover may impact any given acquisition, this lengthy revisit rate often results in a dearth of imagery for a desired time interval (e.g., month, growing season, or year) especially for areas at higher latitudes with shorter growing seasons. In contrast, MODIS (MODerate-resolution Imaging Spectroradiometer) has a high temporal resolution, covering the Earth up to multiple times per day, and depending on the spectral characteristics of interest, MODIS data have spatial resolutions of 250 m, 500 m, and 1000 m. By combining Landsat and MODIS data, we are able to capitalize on the spatial detail of Landsat and the temporal regularity of MODIS acquisitions. In this research, we apply and demonstrate a data fusion approach (Spatial and Temporal Adaptive Reflectance Fusion Model, STARFM) at a mainly coniferous study area in central British Columbia, Canada. Reflectance data for selected MODIS channels, all of which were resampled to 500 m, and Landsat (at 30 m) were combined to produce 18 synthetic Landsat images encompassing the 2001 growing season (May to October). We compared, on a channel-by-channel basis, the surface reflectance values (stratified by broad land cover types) of four real Landsat images with the corresponding closest date of synthetic Landsat imagery, and found no significant difference between real (observed) and synthetic (predicted) reflectance values (mean difference in reflectance: mixed forest x? = 0.086, σ = 0.088, broadleaf x? = 0.019, σ = 0.079, coniferous x? = 0.039, σ = 0.093). Similarly, a pixel based analysis shows that predicted and observed reflectance values for the four Landsat dates were closely related (mean r² = 0.76 for the NIR band; r² = 0.54 for the red band; p < 0.01). Investigating the trend in NDVI values in synthetic Landsat values over a growing season revealed that phenological patterns were well captured; however, when seasonal differences lead to a change in land cover (i.e., disturbance, snow cover), the algorithm used to generate the synthetic Landsat images was, as expected, less effective at predicting reflectance.     

Vegetation water content during SMEX04 from ground data and Landsat 5 Thematic Mapper imagery

Vegetation water content is an important parameter for retrieval of soil moisture from microwave data and for other remote sensing applications. Because liquid water absorbs in the shortwave infrared, the normalized difference infrared index (NDII), calculated from Landsat 5 Thematic Mapper band 4 (0.76-0.90 μm wavelength) and band 5 (1.55-1.65 μm wavelength), can be used to determine canopy equivalent water thickness (EWT), which is defined as the water volume per leaf area times the leaf area index (LAI). Alternatively, average canopy EWT can be determined using a landcover classification, because different vegetation types have different average LAI at the peak of the growing season. The primary contribution of this study for the Soil Moisture Experiment 2004 was to sample vegetation for the Arizona and Sonora study areas. Vegetation was sampled to achieve a range of canopy EWT; LAI was measured using a plant canopy analyzer and digital hemispherical (fisheye) photographs. NDII was linearly related to measured canopy EWT with an R² of 0.601. Landcover of the Arizona, USA, and Sonora, Mexico, study areas were classified with an overall accuracy of 70% using a rule-based decision tree using three dates of Landsat 5 Thematic Mapper imagery and digital elevation data. There was a large range of NDII per landcover class at the peak of the growing season, indicating that canopy EWT should be estimated directly using NDII or other shortwave-infrared vegetation indices. However, landcover classifications will still be necessary to obtain total vegetation water content from canopy EWT and other data, because considerable liquid water is contained in the non-foliar components of vegetation.     

Tree density estimation in a tropical woodland ecosystem with multiangular MISR and MODIS data

In this paper we evaluate the potential of spectral, temporal and angular aspect of remotely sensed data for quantitative extraction of forest structure information in tropical woodlands. Moderate resolution imaging spectroradiometer (MODIS) multispectral data at 500-meter spatial resolution from different dates, multiangle imaging spectroradiometer (MISR) bidirectional reflectance factors (BRF) and normalized difference angular index (NDAI) derived from MISR data at 275-meter spatial resolution were used as input data. The number of trees per hectare bigger than 20cm in diameter at breast height was taken as variable of interest. Simple and multiple ordinary least square regressions and artificial neural networks (ANN) were tested to understand the relationships between the various sources of remotely sensed data and the output variable. An experimental design technique, followed by a classification of the input variables and a factor analysis were implemented in order to understand the structure, reduce the dimensionality of the data and avoid the overfitting of the neural network. The results show that there is a significant amount of independent information in the angular dimension, and this information is highly relevant to the estimation of tree densities in the study area. The MISR NDAI indexes improved the performance of the MISR BRF. The non-linear ANN outperformed the linear regressions. The best results were obtained with the ANN after selecting the input variables according to the results of the experimental design, the classification and the factor analysis, with a 0.71 correlation coefficient against the 0.58 of the best linear regression model.     

Hyperspectral indices and model simulation for chlorophyll estimation in open-canopy tree crops

An investigation of the estimation of leaf biochemistry in open tree crop canopies using high-spatial hyperspectral remote sensing imagery is presented. Hyperspectral optical indices related to leaf chlorophyll content were used to test different radiative transfer modelling assumptions in open canopies where crown, soil and shadow components were separately targeted using 1 m spatial resolution ROSIS hyperspectral imagery. Methods for scaling-up of hyperspectral single-ratio indices such as R₇₅₀/R₇₁₀ and combined indices such as MCARI, TCARI and OSAVI were studied to investigate the effects of scene components on indices calculated from pure crown pixels and from aggregated soil, shadow and crown reflectance. Methods were tested on 1-m resolution hyperspectral ROSIS datasets acquired over two olive groves in southern Spain during the HySens 2002 campaign conducted by the German Aerospace Center (DLR). Leaf-level biochemical estimation using 1-m ROSIS data when targeting pure olive tree crowns employed PROSPECT-SAILH radiative transfer simulation. At lower spatial resolution, therefore with significant effects of soil and shadow scene components on the aggregated pixels, a canopy model to account for such scene components had to be used for a more appropriate estimation approach for leaf biochemical concentration. The linked models PROSPECT-SAILH-FLIM improved the estimates of chlorophyll concentration from these open tree canopies, demonstrating that crown-derived relationships between hyperspectral indices and biochemical constituents cannot be readily applied to hyperspectral imagery of lower spatial resolutions due to large soil and shadow effects. Predictive equations built on a MCARI/OSAVI scaled-up index through radiative transfer simulation minimized soil background variations in these open canopies, demonstrating superior performance compared to other single-ratio indices previously shown as good indicators of chlorophyll concentration in closed canopies. The MCARI/OSAVI index was demonstrated to be less affected than TCARI/OSAVI by soil background variations when calculated from the pure crown component even at the typically low LAI orchard and grove canopies.     

Derivation of a shortwave infrared water stress index from MODIS near- and shortwave infrared data in a semiarid environment

Two different configurations of a shortwave infrared water stress index (SIWSI) are derived from the MODIS near- and shortwave infrared data. A large absorption by leaf water occurs in the shortwave infrared wavelengths (SWIR) and the reflectance from plants thereby is negatively related to leaf water content. Two configurations of a water stress index, SIWSI(6,2) and SIWSI(5,2) are derived on a daily basis from the MODIS satellite data using the information from the near infrared (NIR) channel 2 (841-876 nm) and the shortwave infrared channel 5 (1230-1250 nm) or 6 (1628-1652 nm), respectively, which are wavelength bands at which leaf water content influence the radiometric response. The indices are compared to in situ top layer soil moisture measurements from the semiarid Senegal 2001 and 2002, serving as an indicator of canopy water content. The year 2001 rainfall in the region was slightly below average and the results show a strong correlation between SIWSI and soil moisture. The SIWSI(6,2) performs slightly better than the SIWSI(5,2) (r²=0.87 and 0.79). The fieldwork in 2002 did not verify the results found in 2001. However, year 2002 was an extremely dry year and the vegetation cover apparently was too sparse to provide information on the canopy water content. To test the robustness of the SIWSI findings in 2001, soil moisture has been modelled from daily rainfall data at 10 sites in the central and northern part of Senegal. The correlations between SIWSI and simulated soil moisture are generally high with a median r²=0.72 for both configurations of the SIWSI. It is therefore suggested that the combined information from the MODIS near- and shortwave infrared wavelengths is useful as an indicator of canopy water stress in the semiarid Sahelian environment.     

Enhancing a leaf radiative transfer model to estimate concentrations and in vivo specific absorption coefficients of total carotenoids and chlorophylls a and b from single-needle reflectance and transmittance

The relative concentrations of different pigments within a leaf have significant physiological and spectral consequences. Photosynthesis, light use efficiency, mass and energy exchange, and stress response are dependent on relationships among an ensemble of pigments. This ensemble also determines the visible characteristics of a leaf, which can be measured remotely and used to quantify leaf biochemistry and structure. But current remote sensing approaches are limited in their ability to resolve individual pigments. This paper focuses on the incorporation of three pigments—chlorophyll a, chlorophyll b, and total carotenoids—into the LIBERTY leaf radiative transfer model to better understand relationships between leaf biochemical, biophysical, and spectral properties.Pinus ponderosa and Pinus jeffreyi needles were collected from three sites in the California Sierra Nevada. Hemispheric single-leaf visible reflectance and transmittance and concentrations of chlorophylls a and b and total carotenoids of fresh needles were measured. These data were input to the enhanced LIBERTY model to estimate optical and biochemical properties of pine needles. The enhanced model successfully estimated reflectance (RMSE = 0.0255, BIAS = 0.00477, RMS%E = 16.7%), had variable success estimating transmittance (RMSE = 0.0442, BIAS = 0.0294, RMS%E = 181%), and generated very good estimates of carotenoid concentrations (RMSE = 2.48 µg/cm², BIAS = 0.143 µg/cm², RMS%E = 20.4%), good estimates of chlorophyll a concentrations (RMSE = 10.7 µg/cm², BIAS = − 0.992 µg/cm², RMS%E = 21.1%), and fair estimates of chlorophyll b concentrations (RMSE = 7.49 µg/cm², BIAS = − 2.12 µg/cm², RMS%E = 43.7%). Overall root mean squared errors of reflectance, transmittance, and pigment concentration estimates were lower for the three-pigment model than for the single-pigment model. The algorithm to estimate three in vivo specific absorption coefficients is robust, although estimated values are distorted by inconsistencies in model biophysics. The capacity to invert the model from single-leaf reflectance and transmittance was added to the model so it could be coupled with vegetation canopy models to estimate canopy biochemistry from remotely sensed data.