Staphylococcal lactose phosphoenolpyruvate-dependent phosphotransferase system: site-specific mutagenesis on the lacE gene gives evidence that a cysteine residue is responsible for phosphorylation

The lactose-specific phosphocarrier protein enzyme II of thebacterial phosphoenol-pymvate-dependent phosphotransferase systemof Staphylococcus aureus was modified by sitespecific mutagenesison the corresponding lacE gene in order to replace the histidineresidues 245, 274 and 510 and the cysteine residue 476 of theamino acid sequence with a serine residue. The wild-type andmutant genes were expressed in Escherichia coli and the geneproducts were characterized in different in vitro test systems.In vitro phosphorylation studies on mutant derivatives of thelactose-specific enzyme II led to the conclusion that cysteinersidue 476 is the active-site for phosphorylation of this enzymeII by a phospho-enzyme III of the same sugar specificity. Acysteine residue phosphor) lated intermediate was first postulatedfor the mannitol-specific enzyme II of E.coli and studies performedindependently concerning the lactose-specific enzyme II of Lactobacilluscasei are in agreement with the above results.     

Involvement of various amino- and carboxyl-terminal residues in the active site of the histidine-containing protein HPr of the phosphoenolpyruvate-dependent phosphotransferase system of Staphylococcus carnosus: site-directed mutagenesis with the ptsH gene, biochemical characterization and NMR studies of the mutant proteins

The phosphocarrier HPr (heat stable protein) of Staphylococcuscarnosus was modified by site-directed mutagenesis of the correspondingptsH gene in order to analyse the importance of amino acidswhich were supposed to be part of the active centre of the protein.Three residues which are conserved in all HPrs, Argl7, Prol8and Glu84, were mutated: Argl7 was changed to His (17RH) andPro18 and Glu84 were changed into Ala (18PA and 84EA). In addition,Leu86 was changed into Ala (86LA) and one mutant protein wasmissing the last six residues of the HPr (83). The wild typegene and all mutant genes were overexpressed and the gene productspurified to homogeneity. Three-dimensional structures of wildtype and mutant proteins were monitored by NMR spectroscopy.All five mutant HPrs had native conformations. The ATP-dependentHPr kinase can phosphorylate all HPr derivatives at Ser46. ThePTS activity of the amino-terminal HPr mutant proteins 17RHand 18PA was different compared to wild type HPr. In contrast,the car boxy-terminal mutant HPrs possessed a similar enzymeactivity to the wild type HPr. The 17RH and 18PA HPrs with substitutionnear the active centre His15 showed a very slow phosphorylationby enzyme I but the further transfer of the phosphoryl groupto enzyme III was also strongly inhibited. The enzyme activityof the HPr 17RH was significantly improved at low pH. NMR pH-titrationexperiments showed that Arg17 is not responsible for the lowpK_a, of the active centre His15 but this positively chargedresidue is essential in this position for the HPr activity.     

Probing the role of threonine and serine residues of E.coli asparaginase II by site-specific mutagenesis

Site-specific mutagenesis has been used to probe amino acidresidues proposed to be critical in catalysis by Escherichiacoli asparaginase II. Thr12 is conserved in all known asparaginases.The catalytic constant of a T12A mutant towards L-aspartk acidß-hydroxamate was reduced to 0.04% of wild type activity,while its An, and stability against urea denaturation were unchanged.The mutant enzyme T12S exhibited almost normal activity butaltered substrate specificity. Replacement of Thr119 with Alaled to a 90% decrease of activity without markedly affectingsubstrate binding. The mutant enzyme S122A showed normal catalyticfunction but impaired stability in urea solutions. These dataindicate that the hydroxyl group of Thr12 is directly involvedin catalysis, probably by favorably interacting with a transitionstate or intermediate. By contrast, Thr119 and Ser122, bothputative target sites of the inactivator DONV, are functionallyless important.     

Extracellular secretion of Escherichia coli alkaline phosphatase with a C-terminal tag by type I secretion system: purification and biochemical characterization

Type I secretion system (TISS) of Gram-negative bacteria permits proteins to be secreted directly from the cytoplasm to the external medium by a single, energy-coupled step. To examine whether this system can be used as an extracellular production system of recombinant proteins, Escherichia coli alkaline phosphatase (AP) was fused to a C-terminal region of Pseudomonas sp. MIS38 lipase (PML) and examined for secretion using the E.coli cells carrying the heterologous TISS. PML is one of the passenger proteins of TISS and contains 12 repetitive sequences and a secretion signal at the C-terminal region. The fusion protein was efficiently secreted to the extracellular medium, while AP was not secreted at all, indicating that the secretion of AP is promoted by a secretion signal of PML. The repetitive sequences were not so important for secretion of the fusion protein, because the secretion level of the fusion protein containing entire repeats ( approximately 10 mg/l culture) was only 2-fold higher than that of the fusion protein without repeats. The fusion protein purified from the culture supernatant existed as a homodimer, like AP, and was indistinguishable from AP in enzymatic properties and stability.     

Protein engineering loops in aspartic proteinases: site-directed mutagenesis, biochemical characterization and X-ray analysis of chymosin with a replaced loop from rhizopuspepsin

The loop exchange mutant chymosm 155–164 rhizopuspepsinwas expressed in Trichoderma reesei and exported into the mediumto yield a correctly folded and active product. The biochemicalcharacterization and crystal structure determination at 2.5Å resolution confirm that the mutant enzyme adopts a nativefold. However, the conformation of the mutated loop is unlikethat in native rhizopuspepsin and involves the chelation ofa water molecule in the loop. Kinetic analysis using two syntheticpeptide substrates (six and 15 residues long) and the naturalsubstrate, milk, revealed a reduction in the activity of themutant enzyme with respect to the native when acting on boththe long peptide substrate and milk. This may be a consequenceof the different charge distribution of the mutated loop, itsincreased size and/or its different conformation.     

Analysis of disuiphide bridge function in recombinant bovine prolactin using site-specific mutagenesis and renaturation under mild alkaline conditions: a crucial role for the central disuiphide bridge in the mitogenic activity of the hormone

We have previously described a method for isolating Escherichiacoli-produced methionyl bovine prolactin (Met-bPRL) and itsrenaturation using thioredoxin. This report describes an alternativerenaturation procedure in which extracted Met-bPRL is incubatedin air at pH 10 and 20°C. Within 1 h of such treatment essentiallyall of the reduced Met-bPRL was converted to the oxidized form;this was accompanied by an increase to full mitogenic activityin the Nb2 cell bioassay. It was also found that, to minimizecontamination by high mol. wt Met-bPRL derivatives, it is essentialto have a reducing agent (dithiothreitol) present during disruptionof the bacteria and to extract the protein at neutral pH. Thecontribution of each of the three disuiphide bridges in bPRLto its bioactivity was studied with Met-bPRL variants, preparedvia site-specific mutagenesis, in which cysteines were replacedby serines to prevent disulphide bond formation. Variants lackingthe C4–C11 bridge, the C191–C199 bridge or boththese terminal bridges were as mitogenic as authentic bPRL.(Variants lacking the C191–C199 bridge had markedly increasedsolubility in the presence of deoxycholate.) In contrast, variantslacking the C58–C174 bridge had greatly reduced bioactivity,indicating that integrity of the large disulphide loop is crucialto the hormone's mitogenic activity.     

Nuclear magnetic resonance studies and molecular dynamics simulations of the solution conformation of a 'designed', {alpha}-helical peptide

The complete three-dimensional structure in methanol of an amphipathica-helical peptide, that has been designed by taking into accountthe three-dimensional structures of small haemolytic peptides,secondary structure prediction algorithms and the well documentedliterature on -helix stabilizing factors, has been elucidatedby two-dimensional NMR spectroscopy. Initially various two-dimensionalspectra (COSY, TOCSY, and NOESY) allowed the complete sequencespecific assignment of all signals in the ¹H spectrum. Consequentlytrial structures were generated which were then subjected tomolecular dynamics simulations using 121 NOE-derived distancesand 25 vicinal coupling constant values as structural restraintsto give a final set of calculated structures. These structuresare in complete agreement with the results of a circular dichroismstudy and reveal that the peptide adopted a highly ordered a-helicalconformation. Details of the structure which throw light onfuture peptide/protein design are discussed.