On Optimally Partitioning a Text to Improve Its Compression

In this paper we investigate the problem of partitioning an input string T in such a way that compressing individually its parts via a base-compressor C gets a compressed output that is shorter than applying C over the entire T at once. This problem was introduced in Buchsbaum et al. (Proc. of 11th ACM-SIAM Symposium on Discrete Algorithms, pp. 175–184, 2000; J. ACM 50(6):825–851, 2003) in the context of table compression, and then further elaborated and extended to strings and trees by Ferragina et al. (J. ACM 52:688–713, 2005; Proc. of 46th IEEE Symposium on Foundations of Computer Science, pp. 184–193, 2005) and Mäkinen and Navarro (Proc. of 14th Symposium on String Processing and Information Retrieval, pp. 229–241, 2007). Unfortunately, the literature offers poor solutions: namely, we know either a cubic-time algorithm for computing the optimal partition based on dynamic programming (Buchsbaum et al. in J. ACM 50(6):825–851, 2003; Giancarlo and Sciortino in Proc. of 14th Symposium on Combinatorial Pattern Matching, pp. 129–143, 2003), or few heuristics that do not guarantee any bounds on the efficacy of their computed partition (Buchsbaum et al. in Proc. of 11th ACM-SIAM Symposium on Discrete Algorithms, pp. 175–184, 2000; J. ACM 50(6):825–851, 2003), or algorithms that are efficient but work in some specific scenarios (such as the Burrows-Wheeler Transform, see e.g. Ferragina et al. in J. ACM 52:688–713, 2005; Mäkinen and Navarro in Proc. of 14th Symposium on String Processing and Information Retrieval, pp. 229–241, 2007) and achieve compression performance that might be worse than the optimal-partitioning by a Ω(log?n/log?log?n) factor. Therefore, computing efficiently the optimal solution is still open (Buchsbaum and Giancarlo in Encyclopedia of Algorithms, pp. 939–942, 2008). In this paper we provide the first algorithm which computes in O(nlog?_1+ε n) time and O(n) space, a partition of T whose compressed output is guaranteed to be no more than (1+ε)-worse the optimal one, where ε may be any positive constant fixed in advance. This result holds for any base-compressor C whose compression performance can be bounded in terms of the zero-th or the k-th order empirical entropy of the text T. We will also discuss extensions of our results to BWT-based compressors and to the compression booster of Ferragina et al. (J. ACM 52:688–713, 2005).     

Information Lower Bounds via Self-Reducibility

We use self-reduction methods to prove strong information lower bounds on two of the most studied functions in the communication complexity literature: Gap Hamming Distance (GHD) and Inner Product (IP). In our first result we affirm the conjecture that the information cost of GHD is linear even under the uniform distribution, which strengthens the Ω(n) bound recently shown by Kerenidis et al. (2012), and answers an open problem from Chakrabarti et al. (2012). In our second result we prove that the information cost of IP_n is arbitrarily close to the trivial upper bound n as the permitted error tends to zero, again strengthening the Ω(n) lower bound recently proved by Braverman and Weinstein (Electronic Colloquium on Computational Complexity (ECCC) 18, 164 2011). Our proofs demonstrate that self-reducibility makes the connection between information complexity and communication complexity lower bounds a two-way connection. Whereas numerous results in the past (Chakrabarti et al. 2001; Bar-Yossef et al. J. Comput. Syst. Sci. 68(4), 702–732 2004; Barak et al. 2010) used information complexity techniques to derive new communication complexity lower bounds, we explore a generic way in which communication complexity lower bounds imply information complexity lower bounds in a black-box manner.     

<Emphasis Type="Italic">δ</Emphasis>-equality of intuitionistic fuzzy sets: a new proximity measure and applications in medical diagnosis

Intuitionistic fuzzy set is capable of handling uncertainty with counterpart falsities which exist in nature. Proximity measure is a convenient way to demonstrate impractical significance of values of memberships in the intuitionistic fuzzy set. However, the related works of Pappis (Fuzzy Sets Syst 39(1):111–115, 1991), Hong and Hwang (Fuzzy Sets Syst 66(3):383–386, 1994), Virant (2000) and Cai (IEEE Trans Fuzzy Syst 9(5):738–750, 2001) did not model the measure in the context of the intuitionistic fuzzy set but in the Zadeh’s fuzzy set instead. In this paper, we examine this problem and propose new notions of δ-equalities for the intuitionistic fuzzy set and δ-equalities for intuitionistic fuzzy relations. Two fuzzy sets are said to be δ-equal if they are equal to an extent of δ. The applications of δ-equalities are important to fuzzy statistics and fuzzy reasoning. Several characteristics of δ-equalities that were not discussed in the previous works are also investigated. We apply the δ-equalities to the application of medical diagnosis to investigate a patient’s diseases from symptoms. The idea is using δ-equalities for intuitionistic fuzzy relations to find groups of intuitionistic fuzzified set with certain equality or similar degrees then combining them. Numerical examples are given to illustrate validity of the proposed algorithm. Further, we conduct experiments on real medical datasets to check the efficiency and applicability on real-world problems. The results obtained are also better in comparison with 10 existing diagnosis methods namely De et al. (Fuzzy Sets Syst 117:209–213, 2001), Samuel and Balamurugan (Appl Math Sci 6(35):1741–1746, 2012), Szmidt and Kacprzyk (2004), Zhang et al. (Procedia Eng 29:4336–4342, 2012), Hung and Yang (Pattern Recogn Lett 25:1603–1611, 2004), Wang and Xin (Pattern Recogn Lett 26:2063–2069, 2005), Vlachos and Sergiadis (Pattern Recogn Lett 28(2):197–206, 2007), Zhang and Jiang (Inf Sci 178(6):4184–4191, 2008), Maheshwari and Srivastava (J Appl Anal Comput 6(3):772–789, 2016) and Support Vector Machine (SVM).     

Quantum and Classical Query Complexities of Local Search Are Polynomially Related

Let f be an integer valued function on a finite set V. We call an undirected graph G(V,E) a neighborhood structure for f. The problem of finding a local minimum for f can be phrased as: for a fixed neighborhood structure G(V,E) find a vertex x∈V such that f(x) is not bigger than any value that f takes on some neighbor of x. The complexity of the algorithm is measured by the number of questions of the form “what is the value of f on x?” We show that the deterministic, randomized and quantum query complexities of the problem are polynomially related. This generalizes earlier results of Aldous (Ann. Probab. 11(2):403–413, [1983]) and Aaronson (SIAM J. Comput. 35(4):804–824, [2006]) and solves the main open problem in Aaronson (SIAM J. Comput. 35(4):804–824, [2006]).     

Normality and Finite-State Dimension of Liouville Numbers

Liouville numbers were the first class of real numbers which were proven to be transcendental. It is easy to construct non-normal Liouville numbers. Kano (1993) and Bugeaud (2002) have proved, using analytic techniques, that there are normal Liouville numbers. Here, for a given base k ≥ 2, we give a new construction of a Liouville number which is normal to the base k. This construction is combinatorial, and is based on de Bruijn sequences.     

The computational capability of chemical reaction automata

We propose a new computing model called chemical reaction automata (CRAs) as a simplified variant of reaction automata (RAs) studied in recent literature (Okubo in RAIRO Theor Inform Appl 48:23–38 2014; Okubo et al. in Theor Comput Sci 429:247–257 2012a, Theor Comput Sci 454:206–221 2012b). We show that CRAs in maximally parallel manner are computationally equivalent to Turing machines, while the computational power of CRAs in sequential manner coincides with that of the class of Petri nets, which is in marked contrast to the result that RAs (in both maximally parallel and sequential manners) have the computing power of Turing universality (Okubo 2014; Okubo et al. 2012a). Intuitively, CRAs are defined as RAs without inhibitor functioning in each reaction, providing an offline model of computing by chemical reaction networks (CRNs). Thus, the main results in this paper not only strengthen the previous result on Turing computability of RAs but also clarify the computing powers of inhibitors in RA computation.     

Evaluation Method,Dataset Size or Dataset Content: How to Evaluate Algorithms for Image Matching?

Flutter shutter (coded exposure) cameras allow to extend indefinitely the exposure time for uniform motion blurs. Recently, Tendero et al. (SIAM J Imaging Sci 6(2):813–847, 2013) proved that for a fixed known velocity v the gain of a flutter shutter in terms of root means square error (RMSE) cannot exceeds a 1.1717 factor compared to an optimal snapshot. The aforementioned bound is optimal in the sense that this 1.1717 factor can be attained. However, this disheartening bound is in direct contradiction with the recent results by Cossairt et al. (IEEE Trans Image Process 22(2), 447–458, 2013). Our first goal in this paper is to resolve mathematically this discrepancy. An interesting question was raised by the authors of reference (IEEE Trans Image Process 22(2), 447–458, 2013). They state that the “gain for computational imaging is significant only when the average signal level J is considerably smaller than the read noise variance \(\sigma _r^2\)” (Cossairt et al., IEEE Trans Image Process 22(2), 447–458, 2013, p. 5). In other words, according to Cossairt et al. (IEEE Trans Image Process 22(2), 447–458, 2013) a flutter shutter would be more efficient when used in low light conditions e.g., indoor scenes or at night. Our second goal is to prove that this statement is based on an incomplete camera model and that a complete mathematical model disproves it. To do so we propose a general flutter shutter camera model that includes photonic, thermal (The amplifier noise may also be mentioned as another source of background noise, which can be included w.l.o.g. in the thermal noise) and additive [The additive (sensor readout) noise may contain other components such as reset noise and quantization noise. We include them w.l.o.g. in the readout.] (sensor readout, quantification) noises of finite variances. Our analysis provides exact formulae for the mean square error of the final deconvolved image. It also allows us to confirm that the gain in terms of RMSE of any flutter shutter camera is bounded from above by 1.1776 when compared to an optimal snapshot. The bound is uniform with respect to the observation conditions and applies for any fixed known velocity. Incidentally, the proposed formalism and its consequences also apply to e.g., the Levin et al. motion-invariant photography (ACM Trans Graphics (TOG), 27(3):71:1–71:9, 2008; Method and apparatus for motion invariant imag- ing, October 1 2009. US Patent 20,090,244,300, 2009) and variant (Cho et al. Motion blur removal with orthogonal parabolic exposures, 2010). In short, we bring mathematical proofs to the effect of contradicting the claims of Cossairt et al. (IEEE Trans Image Process 22(2), 447–458, 2013). Lastly, this paper permits to point out the kind of optimization needed if one wants to turn the flutter shutter into a useful imaging tool.     

A polynomial-time algorithm for a flow-shop batching problem with equal-length operations

A flow-shop batching problem with consistent batches is considered in which the processing times of all jobs on each machine are equal to p and all batch set-up times are equal to s. In such a problem, one has to partition the set of jobs into batches and to schedule the batches on each machine. The processing time of a batch B _i is the sum of processing times of operations in B _i and the earliest start of B _i on a machine is the finishing time of B _i on the previous machine plus the set-up time s. Cheng et al. (Naval Research Logistics 47:128–144, 2000) provided an O(n) pseudopolynomial-time algorithm for solving the special case of the problem with two machines. Mosheiov and Oron (European Journal of Operational Research 161:285–291, 2005) developed an algorithm of the same time complexity for the general case with more than two machines. Ng and Kovalyov (Journal of Scheduling 10:353–364, 2007) improved the pseudopolynomial complexity to \(O(\sqrt{n})\). In this paper, we provide a polynomial-time algorithm of time complexity O(log?³ n).     

Error Inhibiting Block One-step Schemes for Ordinary Differential Equations

The commonly used one step methods and linear multi-step methods all have a global error that is of the same order as the local truncation error (as defined in [1, 6, 8, 13, 15]). In fact, this is true of the entire class of general linear methods. In practice, this means that the order of the method is typically defined solely by order conditions which are derived by studying the local truncation error. In this work we investigate the interplay between the local truncation error and the global error, and develop a methodology which defines the construction of explicit error inhibiting block one-step methods (alternatively written as explicit general linear methods [2]). These error inhibiting schemes are constructed so that the accumulation of the local truncation error over time is controlled, which results in a global error that is one order higher than the local truncation error. In this work, we delineate how to carefully choose the coefficient matrices so that the growth of the local truncation error is inhibited. We then use this theoretical understanding to construct several methods that have higher order global error than local truncation error, and demonstrate their enhanced order of accuracy on test cases. These methods demonstrate that the error inhibiting concept is realizable. Future work will further develop new error inhibiting methods and will analyze the computational efficiency and linear stability properties of these methods.     

Continuity of the Effective Delay Operator for Networks Based on the Link Delay Model

This paper is concerned with a dynamic traffic network performance model, known as dynamic network loading (DNL), that is frequently employed in the modeling and computation of analytical dynamic user equilibrium (DUE). As a key component of continuous-time DUE models, DNL aims at describing and predicting the spatial-temporal evolution of traffic flows on a network that is consistent with established route and departure time choices of travelers, by introducing appropriate dynamics to flow propagation, flow conservation, and travel delays. The DNL procedure gives rise to the path delay operator, which associates a vector of path flows (path departure rates) with the corresponding path travel costs. In this paper, we establish strong continuity of the path delay operator for networks whose arc flows are described by the link delay model (Friesz et al., Oper Res 41(1):80–91, 1993; Carey, Networks and Spatial Economics 1(3):349–375, 2001). Unlike the result established in Zhu and Marcotte (Transp Sci 34(4):402–414, 2000), our continuity proof is constructed without assuming a priori uniform boundedness of the path flows. Such a more general continuity result has a few important implications to the existence of simultaneous route-and-departure-time DUE without a priori boundedness of path flows, and to any numerical algorithm that allows convergence to be rigorously analyzed.     

Grounds for Trust: Essential Epistemic Opacity and Computational Reliabilism

Several philosophical issues in connection with computer simulations rely on the assumption that results of simulations are trustworthy. Examples of these include the debate on the experimental role of computer simulations (Parker in Synthese 169(3):483–496, 2009; Morrison in Philos Stud 143(1):33–57, 2009), the nature of computer data (Barberousse and Vorms, in: Durán, Arnold (eds) Computer simulations and the changing face of scientific experimentation, Cambridge Scholars Publishing, Barcelona, 2013; Humphreys, in: Durán, Arnold (eds) Computer simulations and the changing face of scientific experimentation, Cambridge Scholars Publishing, Barcelona, 2013), and the explanatory power of computer simulations (Krohs in Int Stud Philos Sci 22(3):277–292, 2008; Durán in Int Stud Philos Sci 31(1):27–45, 2017). The aim of this article is to show that these authors are right in assuming that results of computer simulations are to be trusted when computer simulations are reliable processes. After a short reconstruction of the problem of epistemic opacity, the article elaborates extensively on computational reliabilism, a specified form of process reliabilism with computer simulations located at the center. The article ends with a discussion of four sources for computational reliabilism, namely, verification and validation, robustness analysis for computer simulations, a history of (un)successful implementations, and the role of expert knowledge in simulations.     

Factors of low individual degree polynomials

Kaltofen (Randomness in computation, vol 5, pp 375–412, 1989) proved the remarkable fact that multivariate polynomial factorization can be done efficiently, in randomized polynomial time. Still, more than twenty years after Kaltofen’s work, many questions remain unanswered regarding the complexity aspects of polynomial factorization, such as the question of whether factors of polynomials efficiently computed by arithmetic formulas also have small arithmetic formulas, asked in Kopparty et al. (2014), and the question of bounding the depth of the circuits computing the factors of a polynomial. We are able to answer these questions in the affirmative for the interesting class of polynomials of bounded individual degrees, which contains polynomials such as the determinant and the permanent. We show that if \({P(x_{1},\ldots,x_{n})}\) is a polynomial with individual degrees bounded by r that can be computed by a formula of size s and depth d, then any factor \({f(x_{1},\ldots, x_{n})}\) of \({P(x_{1},\ldots,x_{n})}\) can be computed by a formula of size \({\textsf{poly}((rn)^{r},s)}\) and depth d + 5. This partially answers the question above posed in Kopparty et al. (2014), who asked if this result holds without the dependence on r. Our work generalizes the main factorization theorem from Dvir et al. (SIAM J Comput 39(4):1279–1293, 2009), who proved it for the special case when the factors are of the form \({f(x_{1}, \ldots, x_{n}) \equiv x_{n} - g(x_{1}, \ldots, x_{n-1})}\). Along the way, we introduce several new technical ideas that could be of independent interest when studying arithmetic circuits (or formulas).     

Mesh generation for confined fusion plasma simulation

XGC1 and M3D-C ¹ are two fusion plasma simulation codes being developed at Princeton Plasma Physics Laboratory. XGC1 uses the particle-in-cell method to simulate gyrokinetic neoclassical physics and turbulence (Chang et al. Phys Plasmas 16(5):056108, 2009; Ku et al. Nucl Fusion 49:115021, 2009; Admas et al. J Phys 180(1):012036, 2009). M3D-\(C^1\) solves the two-fluid resistive magnetohydrodynamic equations with the \(C^1\) finite elements (Jardin J comput phys 200(1):133–152, 2004; Jardin et al. J comput Phys 226(2):2146–2174, 2007; Ferraro and Jardin J comput Phys 228(20):7742–7770, 2009; Jardin J comput Phys 231(3):832–838, 2012; Jardin et al. Comput Sci Discov 5(1):014002, 2012; Ferraro et al. Sci Discov Adv Comput, 2012; Ferraro et al. International sherwood fusion theory conference, 2014). This paper presents the software tools and libraries that were combined to form the geometry and automatic meshing procedures for these codes. Specific consideration has been given to satisfy the mesh configuration and element shape quality constraints of XGC1 and M3D-\(C^1\).     

Connectivity Preserving Multivalued Functions in Digital Topology

We study connectivity preserving multivalued functions (Kovalevsky in A new concept for digital geometry, shape in picture, 1994) between digital images. This notion generalizes that of continuous multivalued functions (Escribano et al. in Discrete geometry for computer imagery, lecture notes in computer science, 2008; Escribano et al. in J Math Imaging Vis 42:76–91, 2012) studied mostly in the setting of the digital plane \({\mathbb {Z}}^2\). We show that connectivity preserving multivalued functions, like continuous multivalued functions, are appropriate models for digital morphological operations. Connectivity preservation, unlike continuity, is preserved by compositions, and generalizes easily to higher dimensions and arbitrary adjacency relations.     

Content-Based Image Retrieval Using Iterative Search

The aim of Content-based Image Retrieval (CBIR) is to find a set of images that best match the query based on visual features. Most existing CBIR systems find similar images in low level features, while Text-based Image Retrieval (TBIR) systems find images with relevant tags regardless of contents in the images. Generally, people are more interested in images with similarity both in contours and high-level concepts. Therefore, we propose a new strategy called Iterative Search to meet this requirement. It mines knowledge from the similar images of original queries, in order to compensate for the missing information in feature extraction process. To evaluate the performance of Iterative Search approach, we apply this method to four different CBIR systems (HOF Zhou et al. in ACM international conference on multimedia, 2012; Zhou and Zhang in Neural information processing—international conference, ICONIP 2011, Shanghai, 2011, HOG Dalal and Triggs in IEEE computer society conference on computer vision pattern recognition, 2005, GIST Oliva and Torralba in Int J Comput Vision 42:145–175, 2001 and CNN Krizhevsky et al. in Adv Neural Inf Process Syst 25:2012, 2012) in our experiments. The results show that Iterative Search improves the performance of original CBIR features by about \(20\%\) on both the Oxford Buildings dataset and the Object Sketches dataset. Meanwhile, it is not restricted to any particular visual features.     

A commentary on “Hybrid search for minimal perturbation in Dynamic CSPs”

The Hybrid Search for Minimal Perturbation Problems algorithm in Dynamic CSP (HS_MPP) (Zivan, Constraints, 16(3), 228–249, 2011) ensures for a given dynamic problem and its solution to the previous CSP, to find the optimal solution to the newly generated CSP. This proposed method exploits the fact that its reported solution must satisfy two requirements. First, that it is a solution for T complete assignment for the derived CSP and second, that it is as close as possible to the solution of the former CSP. Unfortunately, the pseudo-code of the algorithm in Zivan (Constraints, 16(3), 228–249, 2011) is confusing and may lead to an implementation in which HS_MPP may not perform the expected outcomes of a given instance of Dynamic CSPs correctly. In this erratum, we demonstrate the possible undesired outcomes and give corrections in HS_MPP’s pseudo-code.     

Ambiguity and Communication

The ambiguity of a nondeterministic finite automaton (NFA) N for input size n is the maximal number of accepting computations of N for inputs of size n. For every natural number k we construct a family \((L_{r}^{k}\;|\;r\in \mathbb{N})\) of languages which can be recognized by NFA’s with size k?poly(r) and ambiguity O(n ^k ), but \(L_{r}^{k}\) has only NFA’s with size exponential in r, if ambiguity o(n ^k ) is required. In particular, a hierarchy for polynomial ambiguity is obtained, solving a long standing open problem (Ravikumar and Ibarra, SIAM J. Comput. 19:1263–1282, 1989, Leung, SIAM J. Comput. 27:1073–1082, 1998).     

Pessimistic Optimal Choice for Risk-Averse Agents: The Continuous-Time Limit

We extend Hansen and Sargent’s (Discounted linear exponential quadratic gaussian control, 1994, IEEE Trans Autom Control 40:968–971 1995, 2013) analysis of dynamic optimization with risk-averse agents in two directions. Firstly, following Whittle (Risk-sensitive optimal control, 1990), we show that the optimal risk-averse policy is identified via a pessimistic choice mechanism and described by simple recursive formulae. Secondly, we investigate the continuous-time limit and show that sufficient conditions for the existence of optimal solutions coincide with those which apply under risk-neutrality. Our analysis is conducted both under perfect and imperfect state observation. As an illustrative example, we analyze the optimal production policy of an entrepreneur running a monopolistic firm which faces a demand schedule subject to stochastic shocks, showing that risk-aversion induces her to act more aggressively.     

From MDD to BDD and Arc consistency

In this paper, we present a new conversion of multivalued decision diagrams (MDD) to binary decision diagrams (BDD) which can be used to improve MDD-based fil- tering algorithms such as MDDC or MDD-4R. We also propose BDDF, an algorithm that copies modified parts of the BDD “on the fly” during the search of a solution, and yields a better incrementality than a pure MDDC-like approach. MDDC is not very efficient when used to represent poorly structured positive table constraints. Our new representation combined with BDDF retains the properties of the MDD representation and has comparable performances to the STR2 algorithm by Ullmann (2007) and Lecoutre (Constraints, 16.4, 341–371 2011).